genome.fa.s17.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  191  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60884630--60884660	13	2.3	14	94	5	55	51	9	3	35	1.51
60887537--60887589	20	2.7	20	81	0	61	60	0	1	37	1.08
60888512--60888593	31	2.7	29	84	5	92	56	6	0	37	1.24
60890832--60890874	18	2.4	18	88	0	59	18	27	9	44	1.80
60891293--60891462	49	3.5	49	94	0	295	42	3	7	45	1.49
60893736--60893764	14	2.1	14	100	0	58	13	13	51	20	1.75
60894660--60895071	125	3.3	125	90	2	623	30	20	17	31	1.96
60898964--60899035	31	2.3	32	86	9	96	51	11	11	26	1.71
60902282--60902362	35	2.3	35	82	2	92	22	17	30	29	1.96
60903942--60904000	29	2.0	29	100	0	118	44	10	6	38	1.65
60911812--60911874	33	1.9	33	96	0	117	42	17	26	12	1.85
60914280--60914336	28	2.0	28	100	0	114	24	24	17	33	1.96
60914904--60914989	44	2.0	43	93	2	145	26	24	18	30	1.98
60917396--60917457	23	2.7	23	79	0	70	20	29	16	33	1.94
60925555--60925608	19	2.8	20	88	5	58	16	37	25	20	1.93
60925562--60925608	19	2.5	19	96	0	85	17	38	25	19	1.92
60930537--60930566	14	2.1	14	93	0	51	50	6	16	26	1.70
60932026--60932075	2	25.0	2	95	0	91	0	2	50	48	1.12
60933612--60933654	22	2.0	22	90	0	68	9	18	27	44	1.80
60933726--60934017	43	6.8	42	86	3	352	29	31	17	21	1.96
60933726--60934017	86	3.4	86	87	0	397	29	31	17	21	1.96
60934191--60934250	18	3.4	18	64	13	52	40	10	6	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60938742--60938840	40	2.5	40	85	6	130	29	21	18	31	1.97
60938867--60939037	40	4.3	40	81	4	177	24	21	23	30	1.98
60938727--60938973	133	1.9	133	82	5	311	25	22	21	31	1.98
60938867--60939015	80	1.9	80	84	2	201	25	22	23	28	2.00
60939314--60939405	41	2.2	41	88	3	132	28	23	20	27	1.99
60940023--60940064	21	2.0	21	100	0	84	47	14	9	28	1.75
60946968--60947057	41	2.2	41	83	0	108	31	25	17	25	1.97
60947667--60947708	21	2.0	21	100	0	84	47	14	9	28	1.75
60956198--60956240	22	2.0	22	90	0	68	46	16	2	34	1.60
60959933--60959975	22	2.0	22	90	0	68	46	16	2	34	1.60
60961731--60961770	20	2.0	20	95	0	71	27	20	32	20	1.97
60963507--60963547	18	2.3	18	86	0	55	48	7	14	29	1.71
60964639--60964698	31	1.9	32	86	6	88	45	1	3	50	1.28
60964603--60964681	40	2.0	40	87	5	115	43	1	3	51	1.27
60976008--60976068	26	2.3	26	82	0	77	40	9	14	34	1.79
60976790--60976814	13	1.9	13	100	0	50	0	8	28	64	1.22
60978349--60978409	25	2.4	27	76	18	67	4	36	3	55	1.38
60978548--60978579	12	2.7	12	95	0	55	56	6	18	18	1.62
60978902--60978927	13	2.0	13	100	0	52	15	7	7	69	1.35
60982791--60982824	5	6.4	5	90	10	50	0	41	0	58	0.98
60989091--60989121	16	1.9	16	93	0	53	67	0	12	19	1.22
60990929--60991233	154	2.0	154	91	1	495	38	7	17	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60993994--60994497	165	3.1	164	88	5	725	30	9	18	41	1.83
61002142--61002197	27	2.1	27	90	6	87	37	12	21	28	1.90
61005738--61005789	26	2.0	26	96	0	95	28	21	11	38	1.88
61009830--61009871	17	2.5	17	96	0	75	33	38	14	14	1.86
61011752--61011794	22	1.9	23	85	4	61	23	2	30	44	1.66
61012018--61012063	23	2.0	23	100	0	92	34	13	17	34	1.88
61021684--61021725	15	2.5	18	85	14	63	69	0	0	30	0.89
61040114--61040211	27	3.5	28	90	2	135	26	13	28	31	1.94
61040142--61040224	27	3.0	27	87	5	96	30	12	25	32	1.92
61040114--61040225	28	4.0	27	83	6	98	28	12	25	33	1.92
61043722--61043766	21	2.2	20	84	4	54	44	11	6	37	1.66
61047302--61047341	19	2.1	19	90	0	62	30	20	0	50	1.49
61047529--61047635	45	2.4	45	88	0	169	42	19	17	20	1.90
61047835--61047920	40	2.1	41	82	6	104	43	19	6	30	1.78
61058599--61058961	184	2.0	184	90	2	577	24	18	28	28	1.98
61077440--61077621	29	6.2	29	80	2	159	37	23	13	25	1.92
61085130--61085170	21	2.0	21	90	0	64	53	0	14	31	1.41
61085284--61085361	38	2.1	38	100	0	156	50	5	0	44	1.24
61086014--61086070	20	2.9	20	77	12	64	57	0	7	35	1.26
61086015--61086070	19	2.9	19	81	7	60	58	0	5	35	1.21
61086175--61086214	14	2.9	14	84	0	53	50	0	5	45	1.23
61086535--61086567	2	16.5	2	100	0	66	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61091034--61091098	29	2.2	31	86	5	89	35	6	10	47	1.63
61105749--61105790	21	2.0	21	90	4	68	40	9	11	38	1.75
61106355--61106399	15	3.0	15	93	0	72	35	8	15	40	1.79
61107570--61107612	21	2.0	21	86	0	59	16	37	23	23	1.94
61115212--61115289	42	1.9	41	86	5	113	20	34	17	26	1.95
61124789--61124990	39	5.2	39	83	3	237	36	19	30	13	1.91
61124832--61124984	20	7.8	20	65	10	73	33	20	32	13	1.92
61124816--61124990	78	2.2	78	89	4	264	34	19	31	14	1.92
61125253--61125668	148	2.9	144	82	2	490	42	5	9	42	1.61
61125555--61125606	21	2.4	22	75	12	54	55	1	1	40	1.22
61126487--61126548	27	2.3	27	91	0	106	33	12	11	41	1.79
61126799--61126827	14	2.1	14	100	0	58	41	0	0	58	0.98
61132120--61132186	27	2.5	27	60	0	62	35	16	16	31	1.91
61139473--61139500	12	2.3	12	100	0	56	50	14	7	28	1.69
61140511--61140557	19	2.3	21	89	10	71	21	0	14	63	1.30
61140527--61140568	16	2.8	15	89	10	68	21	0	11	66	1.23
61143348--61143419	32	2.3	32	92	4	121	51	13	15	19	1.76
61147026--61147054	14	2.1	14	100	0	58	17	0	27	55	1.42
61148033--61148150	38	3.0	38	79	7	130	37	10	8	44	1.69
61148787--61148850	27	2.3	29	83	5	78	57	1	1	39	1.17
61156035--61156099	20	3.2	20	77	16	64	38	0	1	60	1.07
61156188--61156243	20	2.9	20	78	5	62	26	1	7	64	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61156280--61156418	28	5.0	27	72	14	104	30	3	1	64	1.20
61156043--61156437	9	42.2	9	68	21	124	34	2	3	59	1.28
61156273--61156433	17	9.1	17	72	19	84	30	3	1	65	1.16
61159609--61159661	27	2.0	27	85	7	72	24	39	18	16	1.91
61162113--61162637	260	2.0	259	82	4	628	43	15	11	29	1.81
61163357--61163540	68	2.9	60	75	15	149	49	4	4	41	1.42
61165132--61165163	15	2.1	15	94	0	55	68	9	6	15	1.36
61168447--61168551	43	2.5	43	80	7	115	24	19	26	29	1.98
61173011--61173115	43	2.5	43	80	7	115	24	19	26	29	1.98
61178074--61178110	9	4.1	9	92	0	65	29	10	13	45	1.77
61180594--61180785	101	1.9	102	91	3	316	23	17	28	30	1.97
61180590--61180785	51	3.9	51	83	4	245	23	17	28	30	1.97
61180700--61180780	26	3.2	26	62	28	64	22	14	29	33	1.94
61184399--61184536	10	14.7	10	68	19	75	59	3	2	34	1.27
61184400--61184536	29	4.9	29	66	20	78	59	3	2	35	1.27
61184402--61184506	19	5.6	18	73	15	79	59	3	2	34	1.30
61185818--61185873	13	4.5	13	84	13	82	48	16	1	33	1.56
61186414--61186445	10	3.3	10	95	4	57	18	0	0	81	0.70
61191312--61191392	26	3.2	25	65	28	62	23	13	28	34	1.93
61191394--61191492	46	2.2	43	82	12	119	24	18	24	33	1.97
61191616--61191647	16	2.0	16	93	0	55	59	0	15	25	1.36
61198515--61198685	84	2.0	85	82	7	208	33	25	12	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61198515--61198685	43	4.1	42	80	11	199	33	25	12	28	1.92
61202258--61202338	23	3.3	23	69	24	76	41	3	0	54	1.18
61202209--61202287	35	2.3	34	77	14	83	44	3	0	51	1.19
61202223--61202370	50	2.7	56	79	17	193	40	6	0	53	1.26
61202264--61202370	50	2.1	50	100	0	214	40	5	0	54	1.24
61202281--61202363	23	3.4	23	81	12	112	38	7	0	54	1.28
61202645--61202688	20	2.3	19	80	7	52	63	4	6	25	1.38
61202694--61202968	41	6.7	41	84	3	340	30	25	21	23	1.99
61202694--61202971	123	2.3	122	86	5	380	29	25	20	23	1.99
61204455--61204515	30	2.0	30	100	0	122	16	3	19	60	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203