genome.fa.s17.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  109  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34600042--34600503	93	5.0	93	88	5	484	27	16	17	38	1.91
34600024--34600547	256	2.0	258	93	1	892	26	16	17	38	1.91
34600024--34600499	70	6.8	68	77	10	367	26	16	17	39	1.91
34601421--34601497	40	1.9	40	89	0	118	20	23	29	25	1.99
34601675--34601712	11	3.3	12	85	10	53	18	34	0	47	1.49
34601681--34601748	11	6.2	11	77	5	66	22	27	4	45	1.71
34601675--34601742	22	3.0	22	82	4	82	20	30	4	44	1.71
34604962--34605004	18	2.4	18	76	0	50	18	27	6	46	1.75
34605255--34605300	21	2.2	21	84	7	58	34	41	21	2	1.66
34605543--34606212	22	31.0	22	80	7	705	46	27	0	24	1.57
34605551--34605604	27	2.0	27	88	0	81	38	37	1	22	1.65
34605574--34606212	43	15.0	43	79	7	615	46	27	0	25	1.56
34609334--34610026	126	5.5	125	89	3	959	30	23	16	29	1.96
34610821--34610858	13	2.9	13	88	0	58	26	10	26	36	1.89
34611037--34611098	24	2.6	23	75	12	63	46	0	1	51	1.10
34611558--34611604	23	2.2	20	74	22	51	48	14	0	36	1.44
34613546--34613611	33	2.0	33	100	0	132	36	21	6	36	1.78
34621711--34621766	21	2.6	21	91	2	85	41	25	12	21	1.88
34622838--34622971	33	4.2	33	79	12	172	60	11	18	8	1.57
34625388--34625437	21	2.4	21	80	6	57	48	0	6	46	1.27
34626156--34626185	2	15.0	2	92	0	51	50	3	0	46	1.18
34627088--34627302	41	5.2	41	90	2	324	25	20	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34629396--34629458	30	2.1	30	93	0	108	57	17	3	22	1.54
34629841--34630066	43	5.3	43	81	8	225	31	19	22	26	1.98
34629841--34630024	85	2.2	85	84	6	230	32	19	21	26	1.97
34630514--34630582	21	3.3	21	81	0	75	4	36	18	40	1.71
34633788--34633869	20	4.4	20	65	22	61	30	2	18	48	1.61
34633765--34633887	54	2.3	54	76	10	142	36	1	13	47	1.53
34633853--34633915	21	2.9	22	74	11	58	34	1	14	49	1.53
34633990--34634036	20	2.3	20	82	10	60	55	2	2	40	1.24
34633986--34634038	21	2.5	22	84	9	74	56	1	1	39	1.21
34634519--34634557	14	2.9	14	96	3	71	66	12	0	20	1.24
34638813--34638957	40	3.6	41	78	13	151	26	23	26	24	2.00
34638813--34638963	80	1.9	79	82	6	189	27	23	26	23	2.00
34638892--34639197	153	2.0	153	99	0	603	28	19	24	27	1.99
34664397--34664477	31	2.7	30	81	9	85	41	7	6	44	1.57
34669250--34669287	19	2.0	19	89	0	58	21	15	10	52	1.72
34671953--34672019	34	1.9	35	90	3	109	44	13	8	32	1.75
34677300--34677340	21	1.9	22	85	5	57	26	2	7	63	1.33
34677789--34677852	13	4.9	13	76	14	60	34	7	21	35	1.83
34677791--34677852	26	2.4	26	76	10	72	35	8	20	35	1.83
34680117--34680168	27	1.9	27	88	0	77	61	5	23	9	1.48
34681408--34681454	24	2.0	24	83	8	60	48	0	34	17	1.47
34684692--34684743	19	2.7	19	77	11	52	67	3	0	28	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34684764--34684804	9	4.6	9	81	0	55	68	2	0	29	1.03
34684830--34684876	22	2.3	19	82	13	58	55	6	2	36	1.37
34684832--34684882	20	2.4	22	87	9	70	54	7	1	35	1.40
34685430--34685470	21	2.0	20	85	4	55	26	0	7	65	1.18
34686215--34686256	2	21.0	2	95	0	75	47	50	2	0	1.14
34686218--34686264	8	5.9	8	94	0	58	44	48	6	0	1.28
34696913--34696938	13	2.0	13	100	0	52	30	23	15	30	1.95
34698835--34700622	894	2.0	894	99	0	3504	34	21	20	23	1.97
34702281--34702306	13	2.0	13	100	0	52	30	23	15	30	1.95
34707164--34707209	16	2.9	16	79	20	53	52	2	2	43	1.25
34707895--34707919	9	2.8	9	100	0	50	88	0	0	12	0.53
34727058--34727086	2	14.5	2	100	0	58	48	0	51	0	1.00
34728996--34729052	6	9.5	6	100	0	114	0	49	0	50	1.00
34731764--34731799	17	2.1	17	90	10	56	55	2	0	41	1.14
34732024--34732074	24	2.1	24	100	0	102	25	15	7	50	1.71
34733834--34733876	9	4.4	9	88	5	50	55	0	0	44	0.99
34733839--34733876	19	2.1	18	95	5	67	52	0	0	47	1.00
34733833--34733877	10	4.5	11	81	18	62	57	0	0	42	0.98
34733819--34733877	30	2.0	30	86	3	84	57	0	0	42	0.98
34734754--34734861	55	2.0	55	88	0	162	34	17	21	26	1.96
34739230--34739263	16	2.1	16	88	0	50	26	2	0	70	1.01
34745045--34745085	21	1.9	23	85	14	61	26	19	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34748799--34748852	27	2.0	28	85	3	74	18	5	14	61	1.52
34750767--34750856	45	2.0	45	97	0	171	35	11	10	43	1.74
34751012--34751041	14	2.1	14	93	0	51	46	10	13	30	1.75
34752245--34752285	21	2.0	21	85	0	55	7	36	17	39	1.77
34755715--34755749	17	2.1	17	94	0	61	40	14	11	34	1.82
34757005--34757062	18	3.2	18	75	18	66	46	0	13	39	1.44
34757706--34757782	29	2.6	29	85	2	100	32	40	5	22	1.76
34757709--34757785	30	2.6	30	85	4	93	35	37	5	22	1.76
34757936--34758002	7	9.6	7	80	0	62	50	28	0	20	1.48
34757929--34757996	21	3.2	21	79	6	75	48	27	0	23	1.51
34757922--34758002	28	2.9	28	85	3	92	50	24	0	24	1.49
34757936--34758002	21	3.2	21	87	4	91	50	28	0	20	1.48
34758071--34758144	21	3.5	21	71	10	62	54	24	1	20	1.53
34760465--34760680	91	2.4	90	82	6	258	25	12	24	37	1.91
34768495--34768536	18	2.5	17	80	7	50	52	7	0	40	1.29
34768966--34769032	16	3.9	18	73	15	61	70	7	1	20	1.20
34770435--34770487	25	2.1	25	82	6	63	52	1	22	22	1.56
34780210--34780248	20	1.9	21	84	5	53	23	23	15	38	1.92
34801949--34801977	12	2.5	12	94	5	51	79	3	0	17	0.87
34815187--34815222	18	2.0	18	100	0	72	44	16	11	27	1.82
34815835--34815863	8	3.6	8	100	0	58	27	0	10	62	1.28
34816485--34816519	18	1.9	18	88	0	52	51	0	5	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34817463--34817523	27	2.3	27	91	0	95	47	9	0	42	1.36
34817555--34817606	27	1.9	27	92	0	86	30	23	30	15	1.95
34818177--34818272	19	5.2	19	78	5	115	37	13	0	48	1.43
34818181--34818272	37	2.5	37	94	0	157	36	14	0	48	1.43
34818498--34818563	19	3.5	19	79	4	89	50	1	10	37	1.47
34818875--34818926	27	1.9	27	96	0	95	13	32	23	30	1.93
34818877--34818935	27	2.2	27	87	0	82	13	28	27	30	1.94
34818995--34819032	20	1.9	20	89	10	60	47	2	0	50	1.15
34821963--34821997	14	2.5	14	85	0	52	37	25	5	31	1.80
34823559--34823593	14	2.5	14	85	0	52	37	25	5	31	1.80
34827141--34827176	10	3.7	10	85	7	56	58	0	8	33	1.28
34833688--34833713	12	2.2	12	100	0	52	23	0	0	76	0.78
34833671--34833804	9	14.4	9	70	15	69	29	2	2	65	1.19
34833671--34833730	29	2.0	30	87	9	88	25	1	3	70	1.12
34833671--34833730	30	2.0	29	90	3	93	25	1	3	70	1.12
34833679--34833721	21	2.0	21	86	0	59	23	2	4	69	1.18
34833717--34833781	20	3.4	19	73	10	60	36	3	1	58	1.23
34833725--34833790	20	3.3	20	77	8	64	34	3	3	59	1.28
34850958--34851256	131	2.3	131	92	3	493	41	16	7	34	1.76
34851224--34851424	110	1.8	110	80	6	246	37	14	10	36	1.81
34851544--34851786	132	1.8	131	84	2	335	38	16	9	35	1.81
34852119--34852167	16	2.8	17	81	15	55	46	4	4	44	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34852458--34852519	24	2.6	24	81	0	79	54	1	6	37	1.36
34865072--34865302	114	2.0	114	97	0	435	29	16	24	30	1.96
34869304--34869336	11	3.0	11	100	0	66	45	0	0	54	0.99
34871936--34871980	19	2.4	19	92	0	72	37	35	6	20	1.79
34878168--34878200	17	1.9	17	100	0	66	24	27	6	42	1.78
34879006--34879044	3	13.0	3	100	0	78	33	0	0	66	0.92
34879043--34879089	3	15.7	3	100	0	94	34	31	0	34	1.58
34887975--34888036	26	2.4	26	83	5	72	41	8	11	38	1.70
34899904--34899965	20	2.9	20	80	9	70	70	3	3	22	1.16
34899921--34899973	19	2.8	18	76	18	54	73	3	1	20	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203