genome.fa.s17.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  42  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13933488--13933516	3	10.0	3	92	7	51	65	0	0	34	0.93
13935184--13935242	26	2.4	24	81	10	66	66	1	0	32	1.02
13935213--13935268	21	2.7	22	83	8	64	69	5	0	25	1.09
13935316--13935357	17	2.4	19	80	15	54	66	0	0	33	0.92
13935737--13935773	18	2.0	20	89	10	60	56	5	5	32	1.45
13938474--13938801	179	1.8	179	80	3	392	35	20	17	27	1.94
13939467--13939994	182	2.9	183	83	5	624	41	19	13	25	1.88
13948371--13948423	21	2.5	21	87	0	79	33	35	5	24	1.79
13955210--13955271	30	2.0	30	81	9	72	48	11	1	38	1.49
13955252--13955313	22	2.7	23	71	14	56	56	4	1	37	1.30
13960354--13960399	10	4.7	10	76	13	51	71	0	6	21	1.08
13960354--13960399	18	2.3	20	85	10	60	71	0	6	21	1.08
13960343--13960408	20	3.4	20	79	12	75	69	0	4	25	1.07
13960669--13960725	29	2.0	29	86	3	80	38	3	0	57	1.16
13964647--13964806	83	1.9	84	89	5	250	21	15	12	51	1.75
13964752--13965187	97	4.3	100	86	6	388	19	16	11	52	1.74
13964847--13965187	97	3.5	98	90	4	483	20	16	12	50	1.77
13976363--13976494	44	3.0	44	89	0	201	39	16	12	31	1.87
13978086--13978122	15	2.5	15	86	13	58	67	0	5	27	1.12
13978086--13978122	14	2.5	14	91	8	56	67	0	5	27	1.12
13985936--13985967	3	10.7	3	93	0	55	68	31	0	0	0.90
13993883--13994297	190	2.2	189	80	6	444	37	9	15	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13993883--13994310	98	4.5	94	76	9	348	37	9	16	37	1.81
13996575--13996617	20	2.2	20	100	0	86	39	13	4	41	1.66
14004603--14004642	20	2.0	20	85	9	55	55	25	17	2	1.55
14007631--14007674	19	2.3	20	84	7	56	27	22	11	38	1.88
14012048--14012186	44	3.2	44	68	8	120	28	25	22	24	2.00
14011992--14012142	44	3.4	43	67	8	124	29	21	23	26	1.99
14011986--14012386	88	4.6	87	88	3	474	29	21	23	24	1.99
14012036--14012174	45	3.1	45	68	12	124	31	22	23	23	1.98
14012223--14012358	43	3.2	43	62	12	107	33	23	19	23	1.97
14013508--14013547	20	2.0	20	85	9	55	55	25	17	2	1.55
14015911--14016037	63	2.0	63	98	0	245	33	15	8	41	1.78
14016505--14016564	5	12.0	5	96	0	111	18	0	21	60	1.37
14017047--14017084	11	3.1	12	79	20	51	42	23	15	18	1.89
14019898--14019940	15	2.9	15	83	10	61	48	0	0	51	1.00
14029127--14029168	20	2.2	19	86	4	57	66	2	2	28	1.16
14030576--14030617	16	2.6	17	81	14	61	40	0	0	59	0.97
14031914--14031992	39	2.0	40	90	2	124	39	16	20	24	1.92
14031839--14031992	40	3.8	39	75	7	139	36	18	22	22	1.95
14032028--14032143	41	2.8	40	84	5	144	19	20	30	29	1.97
14032361--14032435	21	3.5	22	75	8	75	28	0	30	41	1.56
14032377--14032417	14	2.9	15	82	10	59	29	0	31	39	1.57
14032430--14032492	22	2.9	22	85	4	74	19	0	42	38	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14032523--14032565	11	3.8	12	78	9	54	30	0	0	69	0.88
14032522--14032575	23	2.3	24	84	6	76	37	0	0	62	0.95
14032773--14032813	21	2.0	21	95	0	73	26	0	43	29	1.55
14032770--14032823	21	2.5	20	82	11	72	24	0	42	33	1.55
14034312--14034390	39	2.0	40	90	2	124	39	16	20	24	1.92
14034237--14034390	40	3.8	39	75	7	139	36	18	22	22	1.95
14034426--14034541	41	2.8	40	88	5	162	19	20	31	28	1.97
14034758--14034832	21	3.5	22	75	8	75	28	0	30	41	1.56
14034774--14034814	14	2.9	15	82	10	59	29	0	31	39	1.57
14034827--14034889	22	2.9	22	85	4	74	19	0	42	38	1.51
14034920--14034962	11	3.8	12	78	9	54	30	0	0	69	0.88
14034919--14034972	23	2.3	24	84	6	76	37	0	0	62	0.95
14035149--14035201	14	3.8	14	83	14	56	30	0	33	35	1.58
14039425--14039669	43	5.7	43	84	1	260	26	16	29	27	1.97
14039425--14039658	85	2.7	86	80	3	249	26	15	29	28	1.96
14039741--14039783	22	2.0	22	90	0	68	41	25	20	11	1.86
14041239--14041287	23	2.1	23	88	0	71	53	2	4	40	1.32
14043807--14043831	8	3.1	8	100	0	50	48	0	0	52	1.00
14043889--14043930	22	2.0	21	81	13	50	50	0	2	47	1.14
14045642--14045714	36	2.0	36	100	0	146	21	13	16	47	1.81
14060082--14060133	24	2.2	24	89	0	77	55	9	1	32	1.43
14071792--14071843	21	2.5	21	87	3	70	28	3	25	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14072566--14072600	2	17.5	2	93	0	61	48	48	2	0	1.16
14073065--14073127	19	3.3	19	76	8	74	42	3	0	53	1.16
14073068--14073142	38	2.0	39	94	5	136	46	2	0	50	1.15
14080683--14080710	4	7.0	4	100	0	56	50	25	0	25	1.50
14081474--14081511	20	1.9	20	89	10	60	63	2	2	31	1.22
14083516--14083578	32	2.0	32	96	0	117	52	12	17	17	1.75
14086416--14086470	24	2.3	24	75	9	58	74	7	1	16	1.12
14088165--14088585	46	9.6	44	76	11	330	26	23	20	29	1.99
14088078--14088365	131	2.2	128	88	4	418	28	23	18	29	1.98
14088211--14088493	87	3.3	85	74	7	327	27	23	19	29	1.98
14088245--14088541	87	3.4	86	74	7	321	26	23	19	30	1.98
14088164--14088589	174	2.4	174	96	0	789	26	23	20	29	1.99
14089829--14089891	31	2.0	31	96	0	117	22	17	25	34	1.95
14093479--14093525	1	47.0	1	95	0	85	97	0	2	0	0.15
14097682--14097777	48	2.0	48	91	4	158	17	23	17	40	1.91
14100428--14100542	58	2.0	58	98	0	221	35	11	13	40	1.80
14105413--14105560	73	2.0	74	90	1	235	43	14	29	12	1.82
14109160--14109222	26	2.4	26	89	5	92	42	6	14	36	1.71
14111515--14111539	7	3.6	7	100	0	50	16	0	12	72	1.13
14112506--14112549	18	2.4	18	92	0	70	40	45	2	11	1.53
14112776--14112830	26	2.1	27	75	21	64	32	7	18	41	1.78
14112851--14112881	9	3.4	9	90	0	53	25	9	22	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14127202--14127255	23	2.3	23	75	6	56	62	0	1	35	1.06
14128683--14128728	14	3.2	14	78	21	51	36	4	6	52	1.47
14133520--14133558	7	5.7	7	90	6	62	76	0	0	23	0.78
14142012--14142056	19	2.3	20	78	17	51	71	8	4	15	1.28
14147305--14147368	24	2.7	24	81	13	78	31	3	3	62	1.26
14153247--14153278	16	2.0	16	93	0	55	81	0	3	15	0.82
14155839--14155864	11	2.4	11	100	0	52	50	7	30	11	1.67
14156128--14156155	6	4.7	6	100	0	56	17	50	0	32	1.47
14164802--14164854	27	2.0	26	82	10	63	50	1	1	45	1.23
14166703--14166767	30	2.1	31	83	8	80	32	12	6	49	1.65
14168625--14169965	670	2.0	670	99	0	2664	35	10	19	35	1.86
14170137--14170272	50	2.7	51	86	5	188	26	21	33	18	1.96
14170708--14170880	45	3.8	44	81	6	168	27	16	22	33	1.95
14174430--14174466	18	2.0	19	85	15	51	45	5	2	45	1.40
14176245--14176276	6	4.9	7	85	14	50	12	12	0	75	1.06
14187189--14187375	35	5.3	35	79	5	171	41	27	11	19	1.86
14187215--14187375	70	2.3	69	82	6	191	40	27	11	20	1.86
14190238--14190373	69	2.0	67	89	2	209	52	7	2	37	1.41
14195932--14195971	13	3.2	12	83	13	53	50	0	0	50	1.00
14195937--14195970	15	2.3	15	89	0	50	52	0	0	47	1.00
14203850--14203890	21	2.0	21	90	0	64	29	21	29	19	1.98
14216820--14216889	28	2.5	28	76	2	68	22	21	35	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14222452--14222476	12	2.1	12	100	0	50	16	40	16	28	1.89
14222470--14222623	25	6.3	25	74	8	111	34	20	24	20	1.97
14222527--14222596	24	3.0	23	77	10	70	38	21	24	15	1.92
14222664--14222724	27	2.3	26	82	2	77	40	19	21	18	1.91
14235659--14235712	26	2.1	26	82	6	65	29	12	16	40	1.86
14237144--14237182	20	1.9	21	85	15	55	25	15	12	46	1.81
14246337--14246404	31	2.2	31	81	5	75	38	7	13	41	1.72
14248319--14248364	21	2.2	20	88	3	65	28	2	4	65	1.23
14252360--14252409	26	2.0	25	88	4	73	16	2	26	56	1.51
14254648--14254704	28	2.0	28	100	0	114	40	10	28	21	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203