genome.fa.s17.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  126  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40031926--40031971	22	2.2	20	92	7	74	60	0	0	39	0.97
40032399--40032437	20	2.0	20	89	0	60	46	12	7	33	1.71
40032404--40032444	20	2.0	20	85	0	55	51	9	7	31	1.62
40032436--40034198	377	4.7	376	86	2	2196	29	17	18	34	1.94
40035283--40035312	4	7.5	4	92	0	51	70	0	30	0	0.88
40036975--40037165	34	5.6	34	78	1	168	42	12	13	31	1.81
40045843--40045912	33	2.1	33	100	0	140	24	8	12	54	1.66
40048509--40048695	67	2.8	67	77	7	198	45	11	12	30	1.77
40050984--40051009	7	3.7	7	100	0	52	61	0	11	26	1.30
40052374--40052427	22	2.5	22	80	14	67	9	31	18	40	1.82
40066512--40066549	20	1.9	20	88	0	58	18	18	15	47	1.83
40072826--40072885	26	2.3	26	88	5	86	45	15	11	28	1.81
40076204--40076280	27	2.9	27	82	7	93	31	18	19	31	1.96
40077626--40077668	11	3.7	11	85	11	59	60	2	0	37	1.10
40081961--40081986	13	2.0	13	100	0	52	30	7	7	53	1.57
40082624--40082681	22	2.6	22	86	5	73	37	22	22	17	1.93
40082646--40082690	22	2.0	22	86	0	63	35	22	22	20	1.96
40083680--40083719	21	2.0	21	85	9	57	27	7	17	47	1.74
40100844--40100881	20	1.9	20	89	10	60	60	5	15	18	1.53
40105609--40105721	51	2.2	49	83	9	138	27	16	6	49	1.69
40112728--40112771	21	2.0	22	86	4	63	34	13	0	52	1.41
40112721--40112777	14	4.2	13	75	20	53	33	15	0	50	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40112738--40112786	14	3.5	13	78	10	53	34	16	0	48	1.46
40112736--40112794	28	2.1	28	81	12	68	35	16	0	47	1.47
40112791--40112826	13	2.7	13	95	4	63	30	0	0	69	0.89
40114481--40114650	63	2.7	62	82	6	191	32	34	5	27	1.79
40119570--40119710	41	3.4	41	80	1	140	23	26	14	35	1.93
40122164--40122539	41	9.2	41	84	0	430	20	27	17	35	1.94
40122276--40122391	21	5.6	21	62	20	64	17	29	18	35	1.93
40134586--40134632	6	7.8	6	76	9	51	68	0	0	31	0.90
40134581--40134632	18	2.9	17	80	8	68	71	0	0	28	0.87
40139621--40139736	22	5.1	22	77	7	90	44	37	2	14	1.59
40139621--40139736	23	5.1	23	78	4	128	44	37	2	14	1.59
40139621--40139736	45	2.6	44	83	4	133	44	37	2	14	1.59
40145885--40145974	40	2.2	41	82	4	101	38	25	13	22	1.90
40147243--40147707	231	2.0	231	97	0	876	39	17	12	30	1.87
40150854--40150920	25	2.7	25	76	0	71	41	13	13	31	1.83
40155035--40155406	50	7.6	50	72	4	326	23	20	23	31	1.98
40155003--40155432	98	4.4	98	90	1	610	23	20	22	33	1.97
40160653--40160694	21	2.0	21	95	0	75	21	28	9	40	1.84
40185817--40185843	8	3.4	8	100	0	54	37	22	0	40	1.54
40192775--40192923	74	2.0	74	98	0	289	32	22	10	34	1.88
40195272--40195319	25	2.0	24	84	8	62	29	2	16	52	1.56
40200326--40200440	6	19.2	6	75	0	86	44	20	19	16	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40200329--40200440	12	9.3	12	80	0	116	43	20	19	16	1.88
40200317--40200443	24	5.3	24	82	0	119	44	21	18	14	1.86
40203567--40203607	8	5.2	8	82	14	50	19	2	2	75	1.03
40203575--40203607	15	2.2	15	89	10	50	21	0	3	75	0.93
40209086--40209209	32	3.9	32	84	0	158	37	20	20	21	1.94
40209086--40209209	64	1.9	64	86	0	176	37	20	20	21	1.94
40209388--40209433	11	4.0	11	81	10	56	50	26	4	19	1.66
40209381--40209438	24	2.4	24	91	0	89	48	24	5	22	1.71
40209381--40209422	13	3.4	13	83	12	61	47	23	4	23	1.70
40209395--40209467	24	3.0	24	86	4	85	46	23	5	24	1.73
40209482--40209841	27	13.4	27	73	11	174	24	20	18	37	1.94
40209482--40209706	80	2.8	79	76	10	217	22	20	19	38	1.94
40209502--40209651	53	2.8	53	82	4	178	22	19	19	38	1.93
40209617--40209763	54	2.7	54	87	6	201	25	19	16	38	1.92
40209642--40209864	54	4.1	54	82	4	198	24	20	17	38	1.93
40209611--40209864	81	3.1	80	80	4	271	24	20	17	37	1.93
40209736--40209864	27	4.7	27	77	4	109	24	21	17	36	1.95
40212276--40212429	41	3.8	41	98	0	290	25	28	21	24	1.99
40221520--40221747	41	5.6	41	94	3	381	29	24	19	26	1.98
40223000--40223038	16	2.2	19	86	13	57	33	5	0	61	1.18
40223375--40223517	41	3.5	41	76	5	137	20	20	24	33	1.97
40227508--40227669	41	4.0	41	83	4	193	20	18	27	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40231487--40231574	46	1.9	46	83	4	115	38	18	20	22	1.93
40231790--40231928	32	4.4	32	82	0	163	38	20	20	20	1.94
40232073--40232130	24	2.4	24	91	5	91	48	24	8	18	1.76
40232086--40232163	24	3.2	24	81	3	77	48	23	5	23	1.70
40232111--40232183	24	3.0	24	83	0	83	47	21	5	24	1.72
40232227--40232507	27	10.4	27	77	10	145	23	18	17	40	1.91
40232226--40232517	54	5.4	55	77	11	225	23	18	18	39	1.92
40232270--40232529	81	3.2	80	82	9	260	23	18	18	39	1.92
40232310--40232529	27	8.1	27	86	5	250	24	18	17	39	1.92
40240136--40240447	159	2.0	159	89	2	484	36	10	15	37	1.83
40242193--40242256	13	4.9	13	92	0	110	23	7	28	40	1.82
40242502--40242537	8	4.5	8	100	0	72	50	0	0	50	1.00
40242508--40242543	16	2.2	16	90	0	54	58	0	0	41	0.98
40245147--40245208	32	1.9	32	100	0	124	45	0	8	46	1.32
40247781--40248069	143	2.0	143	95	1	517	28	14	24	33	1.94
40254407--40254456	3	16.7	3	100	0	100	34	0	0	66	0.92
40262584--40262644	26	2.3	26	83	8	70	54	1	1	42	1.20
40264965--40265049	21	4.0	22	80	8	104	38	24	20	16	1.92
40265990--40266327	51	6.7	50	80	6	317	28	14	26	30	1.95
40265986--40266324	102	3.3	101	87	2	441	28	15	26	30	1.96
40265981--40266327	153	2.3	152	82	3	412	29	14	25	30	1.95
40268106--40268191	21	4.0	22	82	8	97	38	22	20	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40269073--40269155	30	2.9	28	77	10	78	0	26	4	68	1.09
40269364--40269428	30	2.3	27	84	7	76	41	3	0	55	1.15
40271685--40271724	21	2.0	20	90	5	62	47	2	2	47	1.29
40271931--40272027	49	2.0	49	100	0	194	30	30	15	22	1.95
40275815--40275852	20	1.9	20	84	10	51	71	0	10	18	1.14
40279145--40279278	30	4.5	29	68	17	78	38	10	7	43	1.67
40281245--40281377	41	3.2	41	95	0	239	27	24	21	26	1.99
40281710--40282262	288	1.9	288	98	0	1061	38	15	7	38	1.75
40282925--40282976	28	1.9	26	92	7	86	46	7	0	46	1.31
40285654--40285700	24	2.0	23	87	4	67	12	4	10	72	1.25
40287280--40287317	20	1.9	20	89	10	60	18	0	7	73	1.06
40290316--40290367	25	2.0	28	88	11	83	51	3	11	32	1.56
40297491--40297542	25	2.0	28	85	11	74	51	5	11	30	1.61
40299429--40299545	41	2.8	40	85	5	162	25	22	28	23	1.99
40312486--40312529	18	2.4	18	82	10	54	52	6	31	9	1.59
40312577--40312624	24	1.9	25	87	8	71	18	4	10	66	1.37
40319958--40320192	118	2.0	118	100	0	470	36	24	7	31	1.84
40320812--40320954	45	3.2	44	80	7	155	18	18	16	46	1.85
40320943--40321105	45	3.6	45	88	2	231	23	19	21	36	1.95
40320911--40321097	90	2.1	90	84	6	245	22	20	18	38	1.93
40321889--40322008	56	2.1	56	98	0	231	45	9	23	22	1.81
40323177--40323320	40	3.6	40	79	12	145	25	23	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40323229--40323327	39	2.5	39	86	4	110	25	22	28	24	1.99
40323176--40323326	79	1.9	80	81	6	182	25	23	27	23	2.00
40341574--40341629	23	2.4	23	82	5	69	39	19	32	8	1.83
40347648--40348925	639	2.0	639	97	0	2414	26	18	15	40	1.90
40353079--40353134	22	2.5	22	82	5	69	37	19	16	26	1.92
40361740--40361785	23	2.0	23	82	0	56	10	28	26	34	1.90
40363227--40363324	40	2.4	38	81	13	99	58	1	0	40	1.05
40363237--40363320	31	2.9	29	84	8	102	60	1	0	38	1.04
40363251--40363306	10	5.6	10	75	14	53	64	0	0	35	0.94
40363234--40363329	27	3.4	27	83	11	95	61	1	0	37	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203