genome.fa.s17.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  97  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30762875--30762900	12	2.2	12	100	0	52	42	19	0	38	1.51
30766063--30766139	37	2.1	37	95	0	136	29	15	14	40	1.87
30767116--30767174	24	2.4	25	85	2	75	59	6	5	28	1.45
30769366--30769407	22	2.0	21	90	4	66	14	40	0	45	1.45
30770875--30770911	14	2.6	14	91	0	56	32	0	43	24	1.55
30771365--30771403	14	2.7	15	80	8	53	35	0	0	64	0.94
30771830--30771862	15	2.4	14	90	10	50	66	0	12	21	1.23
30774313--30774460	2	74.0	2	100	0	296	0	50	0	50	1.00
30777664--30778346	342	2.0	342	92	0	1143	27	20	19	33	1.96
30787935--30787981	22	2.2	21	81	7	60	36	14	23	25	1.93
30794389--30794415	6	4.5	6	100	0	54	14	0	0	85	0.61
30808629--30808678	24	2.1	24	88	0	73	52	8	4	36	1.50
30811587--30811655	24	2.9	24	95	0	120	34	30	20	14	1.92
30812149--30812312	57	2.9	56	82	3	204	26	20	20	33	1.97
30812362--30812484	44	2.8	44	88	2	167	26	24	19	29	1.98
30812530--30812763	51	4.7	51	69	6	129	26	27	17	28	1.97
30812624--30812989	169	2.2	169	91	0	588	27	25	17	28	1.98
30812950--30813025	36	2.1	36	90	0	116	26	22	23	27	1.99
30814643--30814964	169	1.9	169	91	0	527	27	25	17	28	1.98
30814925--30815000	36	2.1	36	90	0	116	26	22	23	27	1.99
30821540--30821674	26	5.4	26	69	20	76	62	2	4	30	1.26
30821590--30821673	25	3.3	26	80	9	68	65	3	2	28	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30822924--30822972	20	2.5	20	83	6	64	42	0	12	44	1.41
30828530--30828588	23	2.6	23	71	12	59	40	23	3	32	1.71
30842143--30842182	21	1.9	21	89	0	62	62	10	15	12	1.54
30843022--30843097	6	12.2	6	76	13	55	73	6	2	17	1.16
30852013--30852062	19	2.6	19	73	20	50	62	6	14	18	1.51
30866911--30867170	82	3.2	80	81	5	281	22	19	26	31	1.98
30866914--30867188	41	6.8	40	75	7	209	22	18	25	33	1.97
30866890--30867188	163	1.8	162	83	6	399	22	18	25	33	1.97
30867549--30867591	22	2.0	22	85	0	59	23	0	30	46	1.52
30867635--30867681	15	3.1	15	84	3	67	19	0	31	48	1.49
30868793--30868818	4	6.5	4	100	0	52	0	73	0	26	0.84
30874824--30874869	21	2.2	21	88	0	65	19	8	21	50	1.75
30876776--30876862	43	2.0	42	82	2	102	32	9	11	47	1.71
30877308--30877442	43	3.1	43	84	0	171	24	17	27	31	1.97
30879070--30879113	22	2.0	21	83	12	54	40	0	0	59	0.98
30887131--30887183	3	17.7	3	100	0	106	32	0	0	67	0.91
30887564--30887590	5	5.4	5	100	0	54	37	22	18	22	1.95
30888119--30888149	16	1.9	16	93	0	53	45	0	29	25	1.54
30888570--30888600	9	3.4	9	90	0	53	38	22	12	25	1.90
30889842--30889987	48	3.2	47	66	20	128	27	4	11	56	1.53
30889813--30890024	89	2.4	89	91	3	327	24	4	12	58	1.53
30892711--30892749	16	2.3	18	86	8	55	17	15	2	64	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30892746--30892795	17	2.9	17	82	11	66	32	10	0	58	1.31
30892781--30892817	19	1.9	19	94	0	65	29	18	0	51	1.47
30892777--30892854	23	3.4	22	75	16	70	29	16	0	53	1.43
30893276--30893351	5	14.6	5	77	13	73	17	17	2	63	1.43
30893279--30893351	11	6.9	11	76	13	64	17	17	2	61	1.46
30893317--30893363	22	2.1	22	84	0	58	23	19	0	57	1.41
30893375--30893443	17	4.1	17	71	28	67	31	10	0	57	1.32
30893375--30893439	32	2.1	30	86	11	87	30	10	0	58	1.32
30893403--30893518	21	5.7	20	77	19	100	31	8	1	58	1.38
30893540--30893640	5	18.0	5	71	20	58	29	18	0	51	1.47
30893569--30893664	30	3.3	29	80	13	85	30	14	0	55	1.40
30893629--30893667	19	2.1	18	85	4	51	23	7	0	69	1.14
30894024--30894089	17	3.9	17	80	4	71	27	18	0	54	1.44
30894077--30894119	20	2.2	20	87	8	61	27	4	0	67	1.10
30894077--30894287	24	9.0	23	70	19	118	26	9	0	63	1.28
30894126--30894166	19	2.1	19	86	4	55	26	4	2	65	1.25
30894077--30894207	68	1.9	69	83	10	171	28	6	0	64	1.25
30894205--30894279	21	3.5	20	69	25	55	25	14	0	60	1.35
30894249--30894320	27	2.7	27	81	14	87	19	12	1	66	1.31
30894077--30894346	70	3.8	70	74	17	243	25	10	0	62	1.32
30894415--30894454	18	2.3	17	83	8	53	45	2	10	42	1.51
30900337--30900399	29	2.1	30	94	2	110	41	15	23	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30904138--30904196	23	2.6	23	91	0	91	13	20	38	27	1.90
30904160--30904213	23	2.3	23	87	0	72	12	16	42	27	1.85
30909976--30910013	5	7.6	5	100	0	76	18	0	0	81	0.69
30915567--30915604	7	5.4	7	93	0	67	34	26	13	26	1.93
30943288--30943396	7	15.6	7	87	3	114	49	1	20	28	1.59
30943288--30943396	42	2.6	42	88	0	155	49	1	20	28	1.59
30950167--30950429	40	6.6	39	86	4	278	25	27	21	25	1.99
30950167--30950429	120	2.2	119	82	4	307	25	27	21	25	1.99
30950361--30950438	40	1.9	41	82	10	97	26	28	20	24	1.99
30956757--30956814	24	2.4	24	97	0	107	31	36	29	3	1.74
30958126--30958348	79	2.8	78	83	7	272	24	27	22	25	2.00
30958126--30958348	39	5.7	40	87	6	280	24	27	22	25	2.00
30965645--30965687	3	14.0	3	95	4	77	65	0	0	34	0.93
30967553--30967631	26	3.3	26	66	20	80	45	5	8	40	1.57
30967536--30967659	46	2.7	46	98	0	239	45	4	7	43	1.50
30967579--30967651	20	3.3	20	66	20	56	47	2	6	42	1.44
30967751--30967881	64	2.0	64	94	0	226	35	7	4	51	1.51
30967773--30967875	32	3.2	32	64	10	84	33	9	2	54	1.48
30971502--30971526	11	2.3	11	100	0	50	44	8	0	48	1.32
30974437--30974569	41	3.2	41	93	0	221	31	18	18	32	1.94
30974542--30974594	25	2.1	25	92	0	88	26	20	16	35	1.94
30974710--30974840	61	2.1	61	81	2	156	40	16	8	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30977140--30977218	37	2.1	37	90	0	122	25	31	18	24	1.98
30977337--30977747	47	8.7	47	97	0	750	29	30	8	32	1.86
30988165--30988218	25	2.2	25	86	6	74	18	46	11	24	1.81
30999592--30999640	18	2.7	17	81	12	53	46	0	14	38	1.44
31006222--31006272	18	2.7	19	73	14	52	39	9	19	31	1.84
31007375--31007402	14	2.0	14	100	0	56	28	7	0	64	1.20
31007852--31007889	19	2.0	19	85	10	51	21	42	0	36	1.53
31009511--31009550	18	2.5	17	81	18	50	57	0	0	42	0.98
31010416--31010734	117	2.8	113	82	6	369	53	17	4	24	1.61
31015056--31015126	36	2.0	36	94	0	124	30	15	21	32	1.94
31019485--31019524	16	2.5	16	91	0	62	55	0	0	45	0.99
31020726--31020781	22	2.6	21	81	10	69	66	3	0	30	1.09
31028368--31028407	14	2.5	17	73	23	50	20	55	12	12	1.69
31030284--31030491	91	2.3	91	92	0	335	45	3	4	46	1.39
31030406--31030466	28	2.2	28	85	5	81	45	0	3	50	1.17
31030324--31030466	44	3.2	43	69	20	121	46	2	3	48	1.31
31030508--31030541	17	2.0	17	94	0	59	44	5	0	50	1.26
31030508--31030546	17	2.4	16	87	8	53	43	5	0	51	1.24
31030512--31030551	17	2.3	18	83	12	57	47	5	0	47	1.24
31030627--31030661	18	2.0	17	88	5	52	45	0	0	54	0.99
31030747--31030781	18	2.0	17	88	5	52	45	0	0	54	0.99
31030747--31030792	15	2.9	16	84	12	51	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31030507--31030787	120	2.3	120	95	1	494	41	3	4	49	1.41
31031017--31031069	16	3.2	16	94	5	97	37	37	0	24	1.56
31037300--31037343	15	2.9	15	77	16	54	59	0	2	38	1.10
31037741--31037788	19	2.5	19	82	3	51	16	12	16	54	1.72
31040604--31040652	20	2.5	20	87	9	66	26	4	20	48	1.67
31040604--31040672	19	3.6	19	79	13	63	28	4	18	47	1.68
31049179--31049225	10	4.7	10	81	7	51	57	0	2	40	1.11
31049135--31049225	9	9.7	9	72	20	62	60	3	1	35	1.20
31049192--31049227	10	3.5	10	88	7	54	61	0	0	38	0.96
31049153--31049261	47	2.3	46	80	9	114	59	1	4	33	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203