genome.fa.s17.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  195  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62200875--62200934	11	5.6	11	74	25	58	58	0	3	38	1.15
62205069--62205120	3	17.3	3	100	0	104	67	0	0	32	0.91
62211015--62211096	42	2.0	42	100	0	164	20	17	8	53	1.69
62213714--62213785	19	3.7	19	87	5	101	36	0	6	56	1.26
62235419--62235489	35	2.0	35	97	0	133	29	18	15	36	1.92
62237494--62237681	45	4.2	44	71	15	129	30	27	17	25	1.97
62237512--62237671	41	3.8	41	76	7	124	27	27	18	26	1.98
62241578--62241780	81	2.5	81	91	1	318	19	15	20	44	1.86
62241577--62241781	27	7.6	27	84	0	248	19	15	20	44	1.87
62244385--62244456	20	3.6	20	77	3	56	36	13	11	38	1.81
62244407--62244484	40	2.0	40	81	0	93	33	12	10	43	1.77
62244407--62244484	20	3.9	20	75	0	75	33	12	10	43	1.77
62247889--62247924	17	2.1	17	89	0	54	50	0	11	38	1.38
62256634--62256663	6	5.0	6	95	0	51	50	16	3	30	1.62
62257428--62257530	43	2.4	43	82	8	120	32	29	16	22	1.96
62257428--62257542	44	2.7	43	79	6	126	30	27	16	25	1.97
62259677--62259836	85	1.9	85	90	0	257	32	19	15	33	1.92
62259686--62259863	85	2.1	85	84	2	223	33	20	14	31	1.93
62260822--62260874	27	2.0	27	96	0	97	64	3	16	15	1.44
62267016--62269397	608	3.9	608	95	0	4093	34	23	17	25	1.96
62279987--62280041	20	2.8	20	85	0	74	41	18	30	9	1.81
62280715--62280750	17	2.1	17	90	10	56	41	16	0	41	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62285545--62285895	47	7.4	47	93	1	567	32	8	30	28	1.87
62303309--62303333	12	2.1	12	100	0	50	48	0	28	24	1.52
62311771--62311905	59	2.3	60	90	1	227	41	16	13	28	1.86
62311777--62311867	28	3.1	30	72	15	98	39	15	13	31	1.86
62314605--62314669	28	2.3	28	100	0	130	32	20	23	24	1.98
62323036--62323072	17	2.2	17	95	0	65	21	18	8	51	1.72
62325245--62325422	27	6.6	27	84	3	205	29	28	15	26	1.96
62325266--62325421	82	1.9	81	88	3	233	29	28	15	26	1.96
62328240--62328286	24	2.0	24	91	0	76	34	21	12	31	1.91
62329469--62329496	14	2.0	14	100	0	56	35	7	21	35	1.81
62330152--62330201	15	3.4	15	75	22	52	40	2	12	46	1.52
62330328--62330527	78	2.6	76	75	7	199	36	4	16	43	1.68
62330808--62330835	14	2.0	14	100	0	56	35	7	21	35	1.81
62331491--62331540	15	3.4	15	75	22	52	40	2	12	46	1.52
62331667--62331866	78	2.6	76	75	7	199	36	4	16	43	1.68
62336383--62336465	34	2.4	36	78	12	91	33	9	18	38	1.83
62347829--62347883	20	2.8	20	77	0	56	12	34	21	30	1.91
62359696--62359769	20	3.8	19	78	3	76	43	18	29	8	1.79
62359696--62359772	39	2.0	39	84	0	100	44	18	28	9	1.80
62359653--62359769	59	2.0	60	83	5	148	41	19	27	11	1.85
62360443--62360478	17	2.1	17	90	10	56	41	16	0	41	1.48
62367188--62367216	12	2.3	13	94	5	51	65	6	6	20	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62373472--62373496	12	2.1	12	100	0	50	48	0	28	24	1.52
62381944--62382087	59	2.4	60	87	1	218	44	15	12	27	1.83
62381950--62382040	28	3.1	30	71	15	89	40	15	13	30	1.85
62384747--62384811	28	2.3	28	100	0	130	32	20	23	24	1.98
62391000--62391036	17	2.2	17	95	0	65	21	18	8	51	1.72
62393227--62393283	24	2.4	24	84	0	87	33	24	10	31	1.89
62397330--62397379	15	3.4	15	75	22	52	40	2	12	46	1.52
62397506--62397705	78	2.6	76	75	7	199	36	4	16	43	1.68
62397843--62398079	123	1.9	123	91	3	388	27	18	28	24	1.98
62397852--62398080	41	5.6	41	89	0	332	27	18	28	24	1.98
62399863--62399905	18	2.4	18	77	14	52	46	6	9	37	1.63
62400374--62400611	28	8.5	28	99	0	460	28	11	26	34	1.91
62405450--62405521	25	2.9	25	85	0	108	26	23	20	29	1.99
62408317--62408410	34	2.9	32	79	6	107	42	14	9	32	1.79
62409044--62409211	76	2.2	78	82	7	200	40	17	3	38	1.67
62409314--62409372	25	2.4	25	97	0	109	47	10	5	37	1.59
62413793--62413913	60	2.0	60	100	0	242	36	6	0	57	1.25
62418422--62418461	13	2.9	14	81	7	55	82	5	0	12	0.82
62421678--62421729	23	2.3	22	75	21	54	9	23	1	65	1.32
62423048--62423081	9	3.9	9	88	7	52	8	8	11	70	1.34
62428686--62428981	147	2.0	147	92	0	493	51	7	13	28	1.67
62429673--62429726	28	1.9	28	88	0	81	51	1	1	44	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62431732--62431813	27	3.1	26	76	11	67	68	1	2	28	1.10
62439043--62439123	36	2.2	36	100	0	162	25	25	11	37	1.89
62444396--62444491	50	1.9	50	82	4	122	36	15	14	33	1.88
62444486--62444534	23	2.3	22	89	10	75	28	20	14	36	1.92
62444504--62444569	19	3.5	19	77	4	62	27	22	15	34	1.94
62446458--62446500	21	2.0	21	90	0	68	34	2	13	48	1.56
62447660--62447707	22	2.2	22	84	0	60	50	14	22	12	1.77
62448094--62448212	22	5.6	22	73	14	90	60	0	1	37	1.07
62448088--62448192	11	9.9	11	79	12	114	57	0	1	40	1.10
62448088--62448221	53	2.6	53	90	4	193	59	0	1	38	1.06
62448147--62448221	20	4.3	19	69	30	76	64	0	1	34	1.02
62448136--62448264	31	4.2	31	80	8	156	63	0	2	34	1.07
62448178--62448223	20	2.3	20	100	0	92	67	0	0	32	0.91
62448635--62448694	28	2.2	28	93	3	104	43	6	8	41	1.61
62449110--62449180	33	2.1	34	92	2	117	52	7	21	19	1.70
62449827--62449889	20	3.2	20	72	16	60	74	0	19	6	1.02
62461419--62461680	39	6.7	40	87	7	337	25	22	27	24	2.00
62465236--62465474	50	4.7	50	84	8	270	27	21	28	22	1.99
62472527--62472615	9	9.9	9	80	4	108	41	22	10	25	1.85
62474000--62474302	40	7.6	40	89	2	396	27	28	20	24	1.99
62479438--62479466	13	2.2	13	100	0	58	24	24	6	44	1.77
62480722--62480759	13	2.9	13	92	0	67	21	31	39	7	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62481313--62481535	90	2.5	90	84	1	277	29	26	13	31	1.93
62484376--62484403	6	4.7	6	100	0	56	35	0	0	64	0.94
62489775--62489808	3	11.3	3	100	0	68	32	0	0	67	0.91
62497375--62497578	25	8.1	25	72	11	112	35	18	16	30	1.92
62497423--62497572	51	3.0	49	76	8	142	37	17	14	30	1.90
62499128--62499178	9	6.6	8	81	18	56	25	0	5	68	1.12
62499127--62499184	22	2.6	23	86	13	86	25	0	5	68	1.10
62499213--62499268	25	2.2	26	87	9	80	35	1	3	58	1.26
62499718--62499744	7	3.9	7	100	0	54	59	0	0	40	0.98
62500306--62500356	19	2.7	19	80	14	70	37	1	0	60	1.08
62502460--62502519	26	2.2	28	80	8	72	56	11	3	28	1.51
62502469--62502518	12	3.9	12	79	20	57	58	10	2	30	1.42
62502849--62502936	39	2.3	35	77	19	95	60	13	2	23	1.45
62503080--62503169	31	2.8	32	76	11	85	38	26	0	34	1.57
62503526--62504684	388	3.0	388	92	3	1952	31	16	13	38	1.88
62513222--62513281	4	15.0	4	96	0	102	46	25	3	25	1.68
62516245--62516269	2	12.5	2	100	0	50	48	0	0	52	1.00
62518351--62518384	15	2.3	15	89	0	50	61	20	17	0	1.34
62518399--62518437	20	2.0	20	84	0	51	43	20	33	2	1.65
62521484--62521630	53	2.8	50	81	8	125	27	36	21	15	1.93
62521514--62521630	53	2.2	53	89	0	180	26	37	21	14	1.92
62529006--62529032	7	3.9	7	100	0	54	85	14	0	0	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62532731--62532820	44	2.0	44	95	0	162	42	7	3	46	1.49
62535200--62535238	18	2.2	18	95	0	69	71	15	7	5	1.26
62540847--62541132	51	5.6	51	78	6	294	28	14	25	31	1.95
62540847--62541131	153	1.9	153	84	4	387	28	14	25	30	1.95
62540843--62541132	102	2.8	100	87	2	382	28	14	25	30	1.95
62540850--62541170	153	2.1	153	79	4	353	29	13	25	30	1.94
62543435--62543568	68	2.0	69	86	1	189	50	5	4	39	1.47
62550267--62550321	24	2.3	24	79	14	60	60	3	1	34	1.25
62551981--62552823	3	281.0	3	100	0	1686	66	0	33	0	0.92
62553537--62553569	3	11.0	3	100	0	66	0	33	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203