genome.fa.s17.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  21  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6775789--6775895	40	2.7	40	91	0	169	29	25	20	24	1.99
6783189--6783229	20	2.0	21	86	13	59	9	31	0	58	1.31
6795447--6795471	13	1.9	13	100	0	50	48	16	12	24	1.79
6798055--6798099	23	2.0	23	86	4	65	64	0	0	35	0.94
6805149--6805244	31	3.1	29	71	16	79	52	10	10	27	1.68
6808660--6808706	18	2.6	18	80	10	51	42	4	0	53	1.20
6810700--6810730	6	5.2	6	96	0	53	3	0	51	45	1.17
6816042--6816080	19	2.1	19	100	0	78	41	5	5	48	1.47
6816174--6816237	31	2.1	31	96	0	119	40	6	10	42	1.65
6818217--6818514	151	2.0	147	97	2	560	33	20	21	24	1.97
6820221--6820257	16	2.2	18	85	9	51	48	2	0	48	1.15
6825559--6825605	21	2.2	22	92	3	78	21	19	38	21	1.94
6839466--6839605	33	4.2	33	74	7	97	5	32	9	52	1.55
6841639--6841668	2	15.0	2	92	0	51	50	3	46	0	1.18
6853377--6853401	13	1.9	13	100	0	50	16	0	0	84	0.63
6871524--6871548	13	1.9	13	100	0	50	24	4	8	64	1.38
6871503--6871567	34	1.9	34	100	0	130	27	4	4	63	1.34
6887063--6887161	45	2.3	44	89	8	150	25	16	12	46	1.81
6893977--6894046	31	2.3	31	82	0	77	31	1	4	62	1.23
6899700--6899731	2	16.0	2	100	0	64	0	0	50	50	1.00
6902462--6902497	19	1.9	18	88	5	54	38	0	2	58	1.13
6907064--6907092	11	2.7	11	94	5	51	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6911627--6911663	14	2.6	15	83	12	51	45	5	2	45	1.40
6922985--6923039	24	2.2	25	78	12	60	70	5	1	21	1.16
6931162--6931193	11	2.8	12	86	13	50	34	0	0	65	0.93
6931409--6931439	14	2.2	14	94	0	53	61	12	6	19	1.53
6933643--6933707	30	2.2	30	86	5	87	64	3	3	29	1.23
6933649--6933704	23	2.4	23	79	8	69	71	3	3	21	1.17
6940526--6940568	15	2.8	15	80	16	52	58	0	2	39	1.11
6945390--6945433	15	3.1	15	87	9	58	29	0	45	25	1.54
6949525--6949618	4	23.5	4	95	0	125	45	25	7	21	1.77
6955893--6955952	31	1.9	31	93	0	102	35	11	6	46	1.67
6957608--6957674	30	2.2	30	84	5	82	23	14	8	52	1.70
6965282--6965324	20	2.0	20	83	16	52	46	0	4	48	1.22
6965560--6965603	17	2.6	16	78	7	52	63	0	0	36	0.95
6965569--6965622	15	3.6	15	73	9	56	57	0	0	42	0.98
6970246--6970384	70	2.0	69	85	1	188	23	13	20	42	1.88
6983721--6983746	4	6.5	4	100	0	52	26	0	73	0	0.84
6985286--6985351	29	2.3	29	82	12	82	37	1	4	56	1.29
6991230--6991335	47	2.2	49	96	3	198	46	16	18	17	1.85
6998217--6998262	23	2.0	23	86	0	65	39	2	2	56	1.24
7002336--7002384	22	2.3	20	79	6	53	61	0	4	34	1.15
7002589--7002688	29	3.3	30	64	4	76	36	16	8	40	1.77
7002594--7002739	60	2.5	60	87	5	199	36	14	8	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7004683--7004771	44	2.0	45	95	2	162	32	7	22	37	1.83
7005785--7005833	24	2.0	24	100	0	98	46	12	8	32	1.71
7008552--7008599	4	12.0	4	90	0	78	50	25	2	22	1.60
7011858--7011894	19	1.9	19	88	0	56	32	2	5	59	1.34
7011865--7011909	19	2.3	20	88	7	67	28	2	4	64	1.25
7022849--7022909	31	2.0	30	87	3	86	37	8	13	40	1.74
7030521--7030820	68	4.3	68	93	5	528	34	10	8	47	1.69
7030592--7030810	75	3.0	75	89	9	380	34	10	8	46	1.69
7030524--7030810	143	2.0	143	99	0	565	34	10	8	46	1.69
7035035--7035103	31	2.2	31	76	0	75	37	15	4	42	1.68
7044203--7044553	188	1.9	186	86	1	504	36	6	15	41	1.73
7045332--7045392	27	2.2	26	86	13	79	47	0	0	52	1.00
7045336--7045381	15	3.4	14	73	14	51	41	0	0	58	0.98
7051841--7051875	16	2.2	16	94	0	61	42	5	11	40	1.65
7054647--7054682	8	4.6	8	93	6	65	66	11	0	22	1.22
7054647--7054682	15	2.3	16	95	4	65	66	11	0	22	1.22
7058976--7059047	36	2.0	36	97	0	135	50	4	15	30	1.63
7059596--7059631	5	7.8	5	82	17	51	61	0	0	38	0.96
7059591--7059623	17	2.0	17	94	5	59	63	0	0	36	0.95
7067723--7067803	31	2.7	31	85	9	114	51	12	14	20	1.74
7074534--7074844	159	2.0	158	89	1	480	43	21	11	23	1.84
7079655--7079719	32	2.1	29	86	8	85	27	7	9	55	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7080528--7080552	4	6.2	4	100	0	50	24	0	0	76	0.80
7087543--7088045	264	1.9	264	90	1	794	35	12	19	33	1.89
7093223--7093540	162	2.0	163	89	4	491	23	17	23	35	1.95
7095439--7095479	17	2.5	17	84	7	50	24	7	12	56	1.61
7095858--7095907	22	2.4	22	72	27	54	50	0	0	50	1.00
7099892--7099938	21	2.2	22	85	11	62	57	0	8	34	1.29
7102626--7102656	12	2.6	12	100	0	62	6	22	61	9	1.50
7113237--7113363	61	2.1	61	85	5	168	38	5	13	42	1.67
7117679--7117737	27	2.2	26	80	17	68	61	3	3	32	1.29
7128469--7128512	11	4.2	11	85	11	65	18	6	27	47	1.73
7128482--7128547	9	7.2	9	86	10	89	21	10	28	39	1.86
7128482--7128547	20	3.6	18	83	8	89	21	10	28	39	1.86
7129372--7129403	11	2.8	12	86	13	50	12	6	0	81	0.87
7130192--7130294	3	34.3	3	74	11	77	28	6	2	62	1.35
7130210--7130294	12	6.8	12	81	7	89	30	8	2	58	1.40
7130601--7130629	12	2.3	13	94	5	51	17	0	0	82	0.66
7137003--7137049	21	2.2	22	92	3	78	21	38	19	21	1.94
7141168--7141198	5	6.2	5	100	0	62	80	0	0	19	0.71
7144811--7144840	16	1.9	16	93	6	53	66	0	3	30	1.07
7161515--7161545	15	2.1	15	100	0	62	38	0	12	48	1.42
7162616--7162655	19	2.1	19	90	0	62	17	27	30	25	1.97
7168236--7168286	24	2.1	24	100	0	102	33	15	7	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7170487--7170554	34	2.0	34	91	0	109	42	8	19	29	1.81
7173186--7173223	19	2.1	18	90	5	58	47	5	0	47	1.24
7174745--7174777	15	2.2	15	94	0	57	9	33	0	57	1.30
7178851--7178982	68	1.9	68	92	3	221	32	13	10	43	1.79
7179940--7180183	111	2.2	111	100	0	488	49	18	10	21	1.77
7181067--7181101	4	8.8	4	100	0	70	25	0	22	51	1.48
7191765--7191859	41	2.3	41	87	1	136	32	2	14	50	1.55
7191951--7192020	35	2.0	35	97	0	131	30	15	20	34	1.93
7194037--7194160	61	2.0	61	92	0	203	33	12	27	25	1.93
7197714--7197804	46	2.0	46	97	0	173	41	13	12	32	1.81
7198884--7198918	4	8.8	4	100	0	70	51	22	0	25	1.48
7205263--7205315	26	2.0	26	100	0	106	11	18	15	54	1.70
7224966--7225008	20	2.1	20	91	4	68	62	9	6	20	1.48
7226974--7227024	11	4.6	11	75	18	52	58	11	0	29	1.33
7226956--7227026	33	2.2	33	100	0	142	56	11	0	32	1.35
7230939--7231038	49	2.0	49	100	0	200	27	14	19	40	1.89
7233772--7233805	10	3.4	10	100	0	68	61	0	0	38	0.96
7240332--7240375	11	4.2	10	81	18	54	61	2	2	34	1.21
7240335--7240375	21	2.0	21	90	4	66	60	2	2	34	1.23
7249246--7249714	233	2.0	231	92	2	780	27	18	24	28	1.98
7249707--7249759	18	2.9	18	80	5	63	33	11	32	22	1.90
7254743--7254832	45	2.0	45	100	0	180	33	13	13	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7257165--7257281	23	5.1	23	100	0	234	39	12	4	43	1.63
7260774--7260807	15	2.2	16	89	5	52	67	0	0	32	0.91
7262558--7262700	54	2.5	56	84	5	182	39	18	20	21	1.92
7262558--7262722	54	2.9	56	79	7	174	39	17	20	22	1.92
7265257--7265306	21	2.4	21	89	0	73	24	8	34	34	1.84
7266243--7266274	15	2.1	15	100	0	64	37	18	21	21	1.94
7266309--7266406	50	2.0	50	100	0	196	21	16	22	39	1.92
7270423--7270572	81	1.9	78	80	12	171	27	9	13	50	1.72
7270661--7270751	29	3.0	30	73	15	80	47	13	13	26	1.79
7275319--7275350	2	16.0	2	100	0	64	50	50	0	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203