Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  154  of  203  ( 24357 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48961407--48961443
17
2.2
17
90
9
58
43
0
0
56
0.99
48964186--48964227
22
1.9
22
95
0
75
57
16
19
7
1.62
48966046--48966096
20
2.4
21
81
15
61
60
1
1
35
1.19
48969656--48969744
4
22.2
4
92
0
97
23
10
24
41
1.85
48972899--48972948
25
2.0
25
84
7
66
28
8
20
44
1.79
48972926--48973091
51
3.3
51
81
0
199
21
16
25
36
1.94
48972915--48973066
25
6.0
24
70
7
81
21
15
25
37
1.93
48973053--48973115
25
2.5
25
78
0
72
20
19
26
33
1.96
48975415--48975450
18
2.1
18
89
5
56
52
0
0
47
1.00
48976140--48976183
7
6.1
7
86
5
52
25
4
4
65
1.30
48981407--48981460
15
3.3
16
76
18
58
55
1
0
42
1.10
48992757--48992829
36
2.0
36
100
0
146
53
8
24
13
1.67
48993377--48993415
3
13.0
3
100
0
78
33
0
0
66
0.92
48995184--48995218
16
2.2
16
89
0
52
20
20
17
42
1.89
48998902--48998936
17
2.1
17
94
0
61
25
8
28
37
1.85
49014461--49014508
17
2.7
19
74
25
52
62
0
4
33
1.14
49017305--49017393
31
3.0
30
72
4
81
31
11
16
40
1.84
49025698--49025742
21
2.1
21
84
12
56
24
17
0
57
1.40
49033271--49033323
21
2.7
19
86
11
79
37
16
11
33
1.85
49034096--49034852
88
8.6
88
84
2
878
21
25
25
27
1.99
49040181--49040298
51
2.3
50
77
9
116
56
6
5
30
1.49
49040554--49040593
3
13.3
3
89
10
64
65
0
0
35
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49040553--49040593
21
2.0
21
95
4
75
63
0
0
36
0.95
49040554--49040609
24
2.4
24
85
8
71
66
1
0
32
1.03
49041052--49041126
19
3.8
19
87
6
114
34
18
12
34
1.88
49041045--49041122
40
2.0
38
90
5
120
34
19
11
34
1.88
49051249--49051308
28
2.2
27
84
3
75
48
1
1
48
1.21
49052402--49052435
17
2.0
17
100
0
68
23
11
0
64
1.26
49052647--49052671
13
1.9
13
100
0
50
80
0
4
16
0.87
49062212--49062247
15
2.5
14
86
8
54
44
8
0
47
1.33
49062790--49062816
14
1.9
14
100
0
54
0
11
0
88
0.50
49062788--49062826
14
2.6
14
84
8
51
7
7
0
84
0.77
49064284--49064335
5
10.4
5
76
15
54
75
0
3
21
0.97
49064278--49064335
9
6.6
9
76
20
52
74
0
3
22
0.97
49069608--49069679
28
2.6
28
90
0
108
30
12
26
30
1.93
49072261--49072338
38
2.1
37
92
2
129
41
7
19
32
1.80
49078168--49078212
20
2.4
18
88
7
63
55
0
4
40
1.20
49079279--49079321
22
2.0
22
90
0
68
25
13
41
18
1.88
49080035--49080226
44
4.4
43
70
12
117
27
21
17
32
1.96
49080315--49080661
99
3.5
100
84
3
450
26
19
20
33
1.97
49080315--49080653
50
6.8
50
71
7
244
26
18
21
33
1.96
49081898--49081948
19
2.8
18
75
16
52
7
17
1
72
1.18
49086072--49086116
20
2.4
18
81
7
54
53
0
4
42
1.21
49087192--49087234
22
2.0
22
85
0
59
27
16
37
18
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49089751--49089806
26
2.3
23
81
12
58
39
3
0
57
1.16
49091872--49091899
14
2.0
14
100
0
56
85
7
7
0
0.73
49092031--49092088
3
19.3
3
100
0
116
67
0
0
32
0.91
49093622--49094178
264
2.1
264
94
0
979
28
25
19
27
1.99
49094140--49095072
89
10.5
89
92
2
1210
26
24
18
31
1.97
49096198--49096303
56
1.9
56
88
0
158
23
21
21
33
1.98
49096417--49096508
47
2.0
47
86
2
132
11
25
17
45
1.82
49096419--49096519
47
2.1
47
81
1
112
11
25
15
46
1.80
49107422--49107503
40
2.0
40
95
0
146
15
24
13
46
1.82
49108102--49108138
18
2.0
19
89
5
58
27
5
0
67
1.12
49112339--49112440
46
2.1
49
83
7
129
20
13
29
36
1.91
49116424--49116492
35
2.0
35
91
0
111
26
30
14
28
1.95
49119309--49119549
50
4.7
52
83
9
262
26
21
28
22
1.99
49128045--49128082
19
2.0
19
89
0
58
23
15
21
39
1.92
49129943--49130002
28
2.2
27
84
3
75
48
1
1
48
1.21
49132596--49132636
7
5.6
7
83
11
55
43
24
2
29
1.67
49141446--49141483
19
2.0
19
89
0
58
47
5
0
47
1.24
49141703--49141753
20
2.6
19
84
6
66
45
1
1
50
1.24
49142269--49142312
15
2.8
16
83
12
56
52
0
4
43
1.22
49145804--49145852
22
2.2
22
85
0
62
59
12
12
16
1.62
49146563--49146603
21
2.0
21
90
9
66
26
17
26
29
1.97
49146971--49147014
16
2.7
16
78
3
52
15
2
20
61
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49147565--49147619
15
3.7
15
82
0
56
20
5
30
43
1.74
49149284--49149362
21
3.7
22
81
6
74
34
37
15
12
1.85
49149996--49150064
22
2.9
25
68
12
72
49
17
8
24
1.75
49154679--49154723
15
3.1
14
83
6
54
64
0
2
33
1.06
49158072--49158346
89
3.1
89
99
0
541
18
25
23
32
1.97
49161291--49161346
30
2.0
27
86
13
78
53
5
0
41
1.24
49167471--49167531
30
2.0
30
100
0
122
44
19
3
32
1.67
49168701--49168761
30
2.0
30
100
0
122
34
9
16
39
1.82
49168748--49168911
87
1.9
86
87
1
238
29
16
17
37
1.91
49170870--49170911
21
2.0
21
95
0
75
30
26
14
28
1.95
49186966--49187007
20
2.1
20
86
0
57
26
4
0
69
1.08
49186994--49187061
32
2.2
30
81
5
82
45
10
1
42
1.47
49191380--49191414
5
6.8
5
93
6
61
80
0
2
17
0.84
49191379--49191415
11
3.5
11
88
7
58
81
0
2
16
0.81
49196723--49196890
69
2.5
68
78
5
187
32
15
23
28
1.95
49197633--49197658
6
4.3
6
100
0
52
19
19
46
15
1.85
49200271--49200309
21
1.9
21
85
15
55
25
0
2
71
0.98
49202436--49202485
21
2.3
22
83
12
68
46
0
0
54
1.00
49202440--49202512
26
2.7
27
68
14
62
45
0
2
52
1.15
49202874--49203212
10
36.6
9
69
18
157
61
3
1
32
1.23
49202894--49202987
16
5.4
16
71
23
59
62
1
2
34
1.14
49202925--49203212
28
10.2
28
69
21
124
61
3
0
33
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49202893--49203212
19
16.8
19
68
19
138
62
3
0
33
1.18
49202952--49203151
29
7.3
26
72
17
86
63
4
0
32
1.17
49203009--49203077
26
2.5
27
81
6
68
60
5
1
31
1.29
49203083--49203159
27
2.8
27
83
14
95
66
6
0
27
1.16
49203089--49203212
29
4.3
27
76
18
90
62
4
0
33
1.17
49203126--49203198
32
2.2
34
85
7
105
58
4
0
36
1.17
49203550--49203642
10
9.3
10
71
16
52
35
2
4
58
1.30
49203575--49203631
30
1.9
30
82
7
71
33
3
5
57
1.38
49207792--49207830
20
2.0
20
85
10
53
33
7
17
41
1.79
49209347--49209391
20
2.2
20
84
0
54
22
48
17
11
1.78
49209594--49209631
18
2.2
18
90
4
60
13
0
0
86
0.56
49210364--49210440
3
25.7
3
86
5
84
35
6
0
58
1.24
49210913--49211252
108
3.1
109
90
0
520
32
15
18
34
1.91
49211913--49211945
17
1.9
17
88
11
50
57
0
3
39
1.14
49213595--49213965
205
1.8
205
92
0
634
28
24
20
26
1.99
49213805--49214007
90
2.3
87
81
5
221
27
23
21
27
1.99
49213805--49214093
44
6.6
44
74
9
200
26
23
22
27
2.00
49213804--49214053
134
1.9
133
81
4
306
25
23
22
28
2.00
49231481--49231630
40
3.8
40
92
0
237
25
20
29
24
1.99
49231481--49231650
80
2.1
80
89
1
252
24
20
28
26
1.99
49242695--49243317
50
12.5
50
68
11
233
33
24
19
22
1.97
49242631--49243252
100
6.2
100
85
2
734
33
24
19
22
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49243477--49243513
15
2.4
16
82
13
51
81
13
2
2
0.92
49243568--49243618
20
2.5
20
87
0
66
19
49
19
11
1.79
49243823--49243847
7
3.6
7
100
0
50
24
0
0
76
0.80
49244541--49244581
19
2.1
20
95
4
75
21
21
4
51
1.67
49244632--49244721
3
29.7
3
86
6
119
33
5
0
61
1.19
49245001--49245051
18
3.2
18
65
35
53
21
7
7
62
1.48
49244995--49245065
29
2.8
24
80
19
97
19
7
7
66
1.39
49244994--49245057
29
2.2
29
97
2
119
20
6
6
67
1.35
49245222--49245733
109
4.7
108
90
3
771
29
16
20
34
1.94
49254738--49254854
60
2.0
60
87
0
171
31
23
17
27
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203