genome.fa.s17.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  15  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4928268--4928339	27	2.7	27	82	2	92	30	18	18	33	1.94
4930945--4931056	50	2.2	50	79	3	118	28	22	18	30	1.97
4934201--4934251	18	2.8	19	76	11	61	54	7	5	31	1.53
4934602--4934741	40	3.5	40	78	6	142	30	25	17	26	1.97
4934607--4934742	41	3.5	40	76	9	127	32	26	16	25	1.96
4935749--4935787	20	2.0	20	90	5	62	41	2	2	53	1.28
4947112--4947288	22	8.0	22	79	4	153	24	25	17	32	1.97
4947124--4947268	44	3.3	44	87	0	193	23	26	17	33	1.96
4961891--4961937	21	2.2	21	88	11	78	29	29	21	19	1.97
4964155--4964266	30	3.8	29	80	4	116	28	33	8	28	1.87
4964153--4964266	60	1.9	60	83	3	149	28	35	8	28	1.87
4967021--4967073	21	2.5	21	84	6	63	30	28	26	15	1.96
4967185--4967224	21	1.9	21	90	10	64	27	25	22	25	2.00
4982394--4982586	105	1.9	100	80	5	224	33	12	23	30	1.92
4983990--4984036	24	1.9	25	86	4	69	40	0	34	25	1.56
4984672--4984750	38	2.1	38	92	0	131	41	20	17	20	1.90
4984775--4984878	26	4.0	25	75	13	84	41	25	12	21	1.88
4984762--4985102	27	12.7	27	78	5	264	40	24	14	20	1.90
4984762--4984938	53	3.3	53	83	0	201	39	24	14	20	1.91
4984762--4985099	80	4.2	81	80	4	328	40	23	14	20	1.90
4984866--4985104	54	4.4	54	85	2	302	40	23	15	20	1.91
4985297--4985383	26	3.3	26	82	7	104	22	25	18	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4986847--4987071	40	5.7	40	84	5	260	25	28	21	24	1.99
4986851--4987071	119	1.9	120	83	6	297	24	28	22	24	1.99
4989705--4989834	64	2.0	64	92	0	215	20	26	20	31	1.98
4997026--4998007	47	20.9	47	97	0	1779	35	12	28	24	1.91
5000352--5000527	56	3.1	56	98	0	334	22	21	10	45	1.82
5000848--5000936	28	3.2	28	90	0	142	22	23	22	31	1.98
5004047--5004082	16	2.2	16	100	0	72	5	11	16	66	1.40
5009964--5010129	55	3.0	54	78	10	192	39	24	9	26	1.86
5009987--5010180	55	3.6	54	78	8	189	38	24	10	26	1.88
5009975--5010180	110	1.9	109	83	7	265	38	26	10	25	1.87
5012883--5012909	14	1.9	14	100	0	54	29	25	14	29	1.95
5013244--5013326	28	3.0	28	81	0	103	31	8	15	44	1.76
5014252--5014328	19	4.0	19	74	1	73	37	19	20	22	1.94
5018503--5018643	43	3.3	42	87	7	196	36	28	13	21	1.92
5020000--5020049	26	1.9	26	88	8	75	42	18	14	26	1.87
5022640--5022689	26	1.9	26	88	8	75	42	18	14	26	1.87
5026223--5026362	69	2.0	69	91	0	226	27	7	24	41	1.81
5026222--5026332	35	3.2	35	65	12	93	25	7	24	43	1.79
5027527--5027615	37	2.4	37	92	0	151	42	14	7	34	1.75
5027658--5027733	33	2.3	33	97	0	143	43	15	5	35	1.70
5030858--5030891	17	2.0	17	94	0	59	44	5	0	50	1.26
5030858--5030896	17	2.4	16	87	8	53	43	5	0	51	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5030862--5030901	17	2.3	18	83	12	57	47	5	0	47	1.24
5030917--5031098	56	3.0	63	63	19	161	40	2	7	49	1.44
5030857--5031140	117	2.4	116	91	6	448	41	2	4	50	1.38
5031293--5031383	45	2.0	44	87	2	128	34	28	5	31	1.80
5031362--5031415	16	3.4	16	86	0	81	25	35	3	35	1.74
5032309--5032352	18	2.4	18	96	0	79	29	25	2	43	1.67
5032338--5032373	12	3.0	12	95	0	63	36	25	5	33	1.79
5034150--5034190	21	2.0	21	90	0	64	43	0	12	43	1.41
5034159--5034225	35	1.9	35	84	6	91	40	0	14	44	1.46
5034082--5034304	58	3.8	58	85	5	299	34	0	18	46	1.53
5034128--5034369	38	6.3	38	73	17	164	35	0	18	45	1.53
5034118--5034466	9	36.2	9	67	18	125	36	1	16	44	1.57
5034406--5034463	19	3.1	19	85	5	91	39	3	12	44	1.58
5035450--5035501	25	2.2	24	86	10	72	38	0	17	44	1.49
5037167--5037251	40	2.1	41	86	4	120	22	15	11	50	1.76
5037964--5038107	7	21.0	7	72	9	75	47	32	0	19	1.55
5038282--5038560	114	2.4	115	80	3	303	28	22	18	29	1.98
5051521--5051550	13	2.3	13	100	0	60	20	6	13	60	1.55
5052427--5052676	82	3.1	81	63	24	186	45	3	4	46	1.39
5052430--5052739	157	2.0	157	94	0	548	47	5	3	43	1.42
5052877--5052936	16	3.8	16	93	0	102	40	31	0	28	1.57
5052869--5052936	32	2.1	32	91	5	111	39	30	0	29	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5059902--5060238	171	2.0	170	84	2	444	25	10	19	44	1.83
5060699--5060775	22	3.4	22	67	19	68	36	25	2	35	1.70
5060686--5060780	46	2.1	46	100	0	190	41	23	2	33	1.66
5065221--5065297	22	3.4	22	67	19	68	36	25	2	35	1.70
5065208--5065302	46	2.1	46	100	0	190	41	23	2	33	1.66
5071743--5071811	33	2.1	33	86	5	95	24	1	50	23	1.57
5071816--5071885	33	2.1	33	83	0	86	22	5	50	21	1.70
5071989--5072143	51	3.0	51	93	0	265	28	8	27	35	1.86
5074644--5074677	16	2.1	16	100	0	68	29	17	17	35	1.93
5076226--5076276	13	3.9	13	77	10	59	37	0	1	60	1.08
5076385--5076416	11	2.9	11	90	0	55	34	0	0	65	0.93
5080209--5080251	22	2.0	23	86	9	63	9	9	39	41	1.69
5083564--5083755	98	2.0	97	87	1	276	28	14	19	38	1.91
5087210--5087308	23	4.3	23	77	0	108	33	26	18	22	1.96
5087210--5087307	46	2.1	46	88	0	142	33	26	18	21	1.96
5087302--5087333	14	2.4	14	94	5	57	43	25	9	21	1.82
5090035--5090092	30	1.9	30	82	6	73	29	24	6	39	1.81
5090093--5090145	27	2.0	27	96	3	99	37	26	7	28	1.83
5092370--5092412	21	2.0	22	86	8	63	44	2	2	51	1.27
5102443--5102479	13	2.7	14	91	4	58	64	16	0	18	1.29
5102526--5102592	26	2.5	27	92	4	118	22	11	26	38	1.89
5102526--5102610	26	3.2	27	86	6	102	22	12	24	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5102518--5102610	9	10.4	9	82	2	98	23	11	24	39	1.88
5102889--5102921	13	2.5	13	95	0	57	48	15	0	36	1.45
5106539--5106593	27	2.0	28	82	7	67	30	12	5	50	1.63
5106965--5107000	13	2.8	13	91	8	56	61	5	5	27	1.41
5107359--5107453	47	2.0	47	100	0	190	49	18	6	25	1.71
5108212--5108452	120	2.0	120	98	0	464	42	14	17	25	1.87
5127612--5127663	17	3.1	17	100	0	104	5	11	28	53	1.60
5135607--5135640	16	2.1	16	100	0	68	38	11	11	38	1.79
5140247--5140335	29	3.0	29	85	8	90	46	14	8	30	1.75
5140256--5140335	29	2.6	30	88	5	108	46	15	8	30	1.75
5143735--5143805	37	1.9	37	97	0	133	45	16	7	30	1.75
5143843--5143883	19	2.2	19	95	0	73	43	12	4	39	1.63
5146280--5146361	41	2.0	41	90	0	128	47	10	8	32	1.69
5149449--5149492	23	1.9	22	82	17	54	36	25	0	38	1.56
5149538--5149623	45	1.9	45	90	0	136	33	22	15	29	1.94
5149636--5149870	51	4.6	51	84	5	307	31	25	17	26	1.97
5149656--5149736	25	3.2	25	63	27	62	32	28	13	25	1.94
5152597--5152630	17	1.9	17	88	5	50	47	0	23	29	1.52
5156184--5156213	14	2.1	14	100	0	60	50	13	16	20	1.78
5156710--5156752	21	2.0	21	100	0	86	46	18	16	18	1.84
5164237--5164344	57	1.9	54	85	5	144	50	6	3	39	1.46
5177325--5177414	44	2.0	44	100	0	180	52	6	20	21	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5178700--5178890	99	1.9	100	86	5	271	33	9	13	43	1.76
5179447--5179538	22	4.2	22	88	0	112	30	27	0	42	1.56
5179488--5179590	52	2.0	51	83	9	129	33	32	0	34	1.58
5179540--5179581	22	1.9	22	90	0	66	33	33	0	33	1.58
5179623--5179679	29	2.0	29	89	6	89	36	0	1	61	1.07
5179626--5179687	29	2.1	29	85	5	81	37	0	1	61	1.06
5181963--5181998	18	2.1	18	89	5	56	50	19	0	30	1.48
5181951--5182040	24	3.8	23	78	10	101	45	25	1	27	1.61
5181984--5182396	28	14.5	28	74	18	338	46	22	0	31	1.54
5182104--5182182	23	3.2	23	73	16	86	49	18	0	31	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203