genome.fa.s17.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  48  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15659963--15659992	6	5.0	6	100	0	60	66	0	0	33	0.92
15659961--15660026	18	3.5	17	71	25	53	56	3	0	40	1.15
15672445--15672498	20	2.7	20	85	5	74	27	9	20	42	1.82
15673232--15673256	6	4.2	6	100	0	50	0	16	52	32	1.44
15674840--15674895	29	1.9	29	85	7	78	39	14	16	30	1.88
15678443--15678982	27	20.3	27	83	3	520	40	23	16	20	1.91
15678564--15678655	48	1.9	48	93	0	157	40	30	13	16	1.86
15678457--15678912	156	2.9	156	82	5	481	39	24	16	19	1.91
15679217--15679296	26	3.1	27	71	7	76	21	17	25	36	1.95
15679398--15679519	28	4.4	28	84	1	156	23	24	19	31	1.98
15679398--15679552	56	2.7	56	82	4	166	25	25	18	30	1.98
15681304--15681329	6	4.3	6	100	0	52	53	0	0	46	1.00
15685519--15685544	6	4.3	6	100	0	52	53	0	0	46	1.00
15689373--15689400	6	4.7	6	100	0	56	50	0	0	50	1.00
15692722--15692781	30	2.0	31	86	3	86	40	0	40	20	1.52
15692994--15693048	9	6.1	9	91	0	92	29	10	14	45	1.79
15693101--15693131	9	3.4	9	90	0	53	38	22	12	25	1.90
15694194--15694274	40	2.0	41	82	2	101	27	23	22	27	1.99
15695325--15695387	22	2.8	22	75	2	63	61	1	4	31	1.26
15695584--15695622	20	2.0	20	90	10	62	56	0	5	38	1.22
15695665--15695718	24	2.3	24	84	9	67	59	7	1	31	1.36
15698466--15698528	31	2.0	31	90	0	99	34	15	0	49	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15700515--15700614	46	2.2	44	83	11	123	32	24	20	24	1.98
15708175--15708341	84	2.0	84	81	6	196	31	27	16	24	1.96
15708168--15708373	42	4.9	42	78	7	177	30	27	17	24	1.97
15712903--15713046	42	3.4	42	89	0	207	29	28	16	25	1.97
15715249--15715283	16	2.2	16	100	0	70	48	0	11	40	1.39
15717593--15717698	42	2.5	42	81	4	115	33	27	15	24	1.95
15719261--15719459	42	4.8	42	79	7	192	32	26	14	26	1.95
15724012--15724155	42	3.4	42	84	2	137	29	27	16	27	1.97
15728722--15728754	6	5.7	6	96	3	59	54	0	0	45	0.99
15730186--15730235	23	2.2	23	96	0	91	46	10	4	40	1.56
15733601--15733634	17	2.0	17	100	0	68	35	23	11	29	1.90
15745326--15745373	15	3.3	15	86	11	64	60	4	20	14	1.51
15746280--15746335	20	2.8	20	76	10	60	75	5	3	16	1.13
15746658--15746703	23	2.1	22	92	8	76	58	4	6	30	1.43
15752243--15752526	41	6.9	41	81	4	288	22	17	27	32	1.97
15752260--15752527	124	2.2	123	82	4	317	23	17	26	32	1.97
15752250--15752526	83	3.4	81	82	4	308	23	17	26	32	1.97
15752874--15752921	14	3.3	15	82	8	64	22	0	39	37	1.55
15752876--15752914	7	5.4	7	81	6	51	25	0	41	33	1.56
15752874--15752964	21	4.3	21	69	6	67	24	1	40	34	1.62
15753190--15753227	14	2.7	14	84	12	51	23	0	39	36	1.55
15753226--15753276	15	3.5	15	78	5	50	19	0	45	35	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15753235--15753284	14	3.5	14	79	15	57	22	0	44	34	1.53
15753235--15753299	29	2.2	30	81	10	73	23	0	41	35	1.55
15753718--15753860	40	3.6	40	83	5	164	32	18	18	30	1.96
15758067--15758165	43	2.3	43	91	0	153	21	19	30	29	1.97
15759765--15759801	18	2.1	18	90	5	58	56	8	5	29	1.51
15761146--15761236	23	4.1	23	72	11	100	20	28	6	43	1.77
15761133--15761216	42	2.0	42	92	0	141	22	25	9	42	1.83
15765617--15765707	23	4.1	23	69	11	82	21	26	6	45	1.76
15765604--15765687	42	2.0	42	90	0	132	23	22	9	44	1.82
15766173--15766316	71	2.0	71	98	0	279	33	24	14	27	1.94
15767430--15767487	4	14.5	4	100	0	116	50	24	0	25	1.50
15770506--15770564	29	2.0	29	100	0	118	47	6	16	28	1.72
15771915--15771939	13	1.9	13	100	0	50	36	0	16	48	1.46
15776778--15777276	268	1.9	267	91	3	835	39	14	17	28	1.89
15777659--15777700	12	3.7	11	81	12	50	11	4	7	76	1.15
15777638--15777707	24	3.2	22	76	11	72	12	4	4	78	1.04
15779194--15779229	2	18.0	2	100	0	72	50	0	50	0	1.00
15791864--15791911	24	2.0	24	84	12	62	16	29	18	35	1.93
15791879--15791960	24	3.4	24	75	9	69	14	31	21	31	1.94
15804245--15804293	3	16.3	3	100	0	98	67	0	0	32	0.91
15804535--15804594	23	2.6	24	76	7	70	40	16	10	33	1.82
15804554--15804623	23	3.0	23	80	2	86	42	17	11	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15811393--15811432	21	1.9	21	85	10	55	25	10	5	60	1.49
15815536--15815599	29	2.1	29	83	11	76	48	17	12	21	1.80
15815872--15815914	22	1.9	23	85	4	61	58	0	0	41	0.98
15826884--15826935	24	2.2	24	89	0	77	55	9	1	32	1.43
15831164--15831244	41	2.0	42	87	2	119	48	1	6	44	1.35
15839035--15839085	22	2.3	22	79	0	57	58	21	13	5	1.56
15849519--15849558	18	2.4	17	87	8	55	72	2	0	25	0.97
15849519--15849559	17	2.4	17	81	18	50	70	2	0	26	0.99
15850146--15850441	74	4.0	74	96	0	529	43	12	13	30	1.82
15850718--15850772	27	2.0	27	100	0	110	43	3	21	30	1.70
15850879--15850923	22	2.0	22	95	0	81	42	6	8	42	1.62
15854836--15854902	2	33.5	2	100	0	134	50	0	49	0	1.00
15857168--15857260	47	2.0	47	97	0	177	24	15	20	39	1.91
15859566--15859621	24	2.4	22	78	18	60	32	5	7	55	1.50
15877194--15877516	45	7.2	45	94	0	529	25	20	15	38	1.92
15887327--15887761	45	9.7	45	97	0	789	27	19	15	37	1.92
15887875--15887906	16	2.0	16	100	0	64	50	25	12	12	1.75
15893368--15893455	38	2.3	39	90	3	135	32	15	14	36	1.89
15895885--15895933	19	2.5	19	90	3	71	57	4	8	30	1.47
15896532--15896558	14	1.9	14	100	0	54	88	0	3	7	0.61
15896508--15896561	23	2.3	23	84	6	65	81	1	7	9	0.94
15903777--15904337	50	11.2	50	69	6	346	24	24	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15903791--15904387	100	6.0	100	91	0	935	23	23	22	30	1.99
15912440--15912479	20	2.0	20	100	0	80	30	15	25	30	1.95
15916464--15916512	19	2.5	19	90	3	71	57	4	8	30	1.47
15920801--15920893	38	2.3	41	76	17	104	32	12	17	37	1.88
15920815--15920903	39	2.3	38	90	5	135	30	14	15	39	1.88
15920913--15920986	32	2.3	32	90	0	121	27	24	2	45	1.66
15921731--15921790	30	2.0	30	100	0	120	20	26	26	26	1.99
15928044--15928088	23	2.0	23	95	0	81	40	24	17	17	1.91
15930495--15930950	114	4.0	113	78	7	428	27	21	23	28	1.99
15930495--15930950	227	2.0	226	81	8	536	27	21	23	28	1.99
15933801--15933852	21	2.5	20	84	6	68	28	21	46	3	1.69
15934177--15934455	42	6.7	42	91	1	445	31	22	22	23	1.99
15934177--15934455	83	3.3	84	91	1	454	31	22	22	23	1.99
15934177--15934455	125	2.2	125	92	0	468	31	22	22	23	1.99
15934426--15934585	42	3.8	42	83	4	207	18	22	21	37	1.94
15934430--15934585	83	1.9	84	87	4	235	18	21	21	38	1.93
15936410--15936460	24	2.2	22	82	6	57	43	3	3	49	1.39
15937735--15937801	34	1.9	35	87	3	100	31	8	14	44	1.76
15940644--15940702	31	1.9	31	85	0	82	38	11	6	42	1.68
15943325--15943370	20	2.3	20	96	0	83	54	26	4	15	1.59
15946941--15947017	41	1.9	40	83	2	100	53	10	5	31	1.57
15951308--15951370	31	2.0	33	84	12	87	39	1	0	58	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15961193--15961222	12	2.6	11	90	10	51	33	3	0	63	1.11
15971714--15971847	45	3.0	44	81	2	144	21	17	27	33	1.96
15976905--15976981	41	1.9	40	83	2	100	32	3	9	54	1.50
15986498--15986774	139	2.0	140	91	0	448	18	21	8	51	1.72
15989850--15989908	15	3.9	14	75	14	55	61	0	1	37	1.07
15989869--15989916	14	3.1	14	83	16	60	64	0	2	33	1.05
15989874--15989916	16	2.7	16	77	0	50	67	0	2	30	1.03
15989967--15990007	22	2.0	21	85	9	57	46	0	2	51	1.14
15991588--15991619	15	2.1	16	94	5	57	53	0	0	46	1.00
15993613--15993641	3	9.7	3	100	0	58	0	34	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203