genome.fa.s17.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  103  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32705422--32705463	21	2.0	21	95	0	75	42	16	9	30	1.80
32707904--32707943	21	1.9	21	94	0	71	42	15	10	32	1.79
32710667--32710780	41	2.8	41	86	0	156	33	30	20	15	1.94
32710918--32711257	47	6.9	47	75	13	283	37	16	7	38	1.77
32710887--32711125	95	2.5	96	93	2	408	38	15	7	38	1.75
32712716--32712778	30	2.1	30	96	0	117	57	15	3	23	1.53
32728056--32728089	15	2.3	15	89	0	50	35	2	11	50	1.54
32730467--32730508	20	2.0	22	86	9	61	23	30	19	26	1.98
32735393--32735866	110	4.4	110	80	10	530	36	6	8	48	1.60
32739483--32739521	14	2.8	14	80	0	51	35	10	12	41	1.77
32739768--32739817	20	2.4	21	93	6	84	48	0	2	50	1.12
32739768--32739852	10	8.6	10	72	13	61	48	0	3	48	1.18
32739731--32739894	58	2.8	59	79	9	167	43	1	3	50	1.30
32740061--32740117	16	3.6	16	92	0	87	28	22	7	42	1.80
32740370--32740536	82	2.0	82	94	0	289	32	11	20	35	1.88
32754356--32754497	43	3.3	43	79	5	117	33	23	16	26	1.95
32757500--32757712	104	2.0	104	99	0	417	28	24	13	33	1.93
32766525--32766549	11	2.3	11	100	0	50	48	16	0	36	1.46
32770993--32771019	9	3.0	9	100	0	54	44	0	22	33	1.53
32785129--32785164	17	2.2	17	90	5	56	33	2	8	55	1.44
32796154--32796191	20	1.9	20	100	0	76	7	31	21	39	1.82
32798764--32798841	39	2.0	39	92	0	129	30	8	8	51	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32799287--32799323	13	2.9	13	96	4	67	40	8	27	24	1.83
32802997--32803057	5	11.4	5	84	11	77	55	0	1	42	1.09
32803829--32803878	20	2.5	20	83	0	73	8	24	44	24	1.80
32807969--32808023	17	3.1	17	82	10	58	16	9	0	74	1.06
32807974--32808020	13	3.5	13	91	8	69	17	8	0	74	1.05
32807978--32808039	19	3.4	18	80	6	63	25	4	0	69	1.08
32811290--32811323	3	11.3	3	93	0	59	35	29	0	35	1.58
32812907--32812983	34	2.2	34	79	6	84	31	22	20	25	1.98
32812983--32813047	29	2.2	31	86	10	91	46	15	12	26	1.81
32813447--32813862	27	15.4	27	83	4	363	18	16	21	43	1.88
32813447--32813862	54	7.7	54	86	2	521	18	16	21	43	1.88
32813436--32813862	81	5.3	80	86	3	523	18	16	22	42	1.89
32817662--32817738	34	2.2	34	79	6	84	31	22	20	25	1.98
32817738--32817802	29	2.2	31	86	10	91	46	15	12	26	1.81
32818202--32818617	27	15.4	27	83	4	363	18	16	21	43	1.88
32818202--32818617	54	7.7	54	86	2	521	18	16	21	43	1.88
32818191--32818617	81	5.3	80	86	3	523	18	16	22	42	1.89
32823508--32823536	14	2.1	14	100	0	58	27	0	6	65	1.18
32828376--32828462	30	2.9	30	84	0	111	34	19	14	31	1.92
32828586--32828629	23	1.9	23	100	0	88	29	27	4	38	1.76
32828651--32828675	2	12.5	2	100	0	50	52	0	0	48	1.00
32831529--32831697	86	2.0	86	98	0	329	29	1	26	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32835399--32835457	20	3.0	21	82	9	70	5	22	1	71	1.15
32835399--32835432	11	3.4	10	88	12	52	0	20	0	79	0.73
32837036--32837198	27	6.1	26	82	8	134	20	15	20	43	1.88
32837065--32837198	53	2.5	54	80	4	155	17	14	22	45	1.84
32851523--32851676	69	2.2	69	94	0	272	20	24	16	37	1.93
32851523--32851676	35	4.5	34	86	2	200	20	24	16	37	1.93
32854227--32854259	11	2.8	12	86	13	50	27	9	6	57	1.53
32858093--32858234	60	2.3	60	80	8	137	47	7	10	34	1.65
32861977--32862001	2	12.5	2	100	0	50	48	0	0	52	1.00
32862760--32862800	12	3.4	12	79	0	55	56	4	7	31	1.48
32862761--32862808	24	2.0	24	88	4	71	60	4	8	27	1.44
32864646--32864700	3	18.0	3	88	3	83	65	1	1	30	1.13
32867318--32867378	31	2.0	31	90	0	95	45	6	8	39	1.60
32867318--32867398	31	2.6	31	84	5	85	44	7	9	38	1.66
32868324--32868382	31	1.9	31	85	0	82	33	0	3	62	1.12
32868317--32868395	31	2.5	31	72	12	79	32	1	5	60	1.26
32868970--32869009	20	2.0	20	100	0	80	30	20	5	45	1.72
32873741--32873800	29	2.1	28	87	9	86	31	0	1	66	1.01
32873741--32873800	28	2.1	29	87	9	88	31	0	1	66	1.01
32882123--32882150	6	4.7	6	100	0	56	85	0	14	0	0.59
32883672--32883729	18	3.2	18	72	0	62	15	37	5	41	1.70
32884435--32884460	12	2.2	12	100	0	52	30	7	15	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32885855--32885882	13	2.2	13	100	0	56	53	14	0	32	1.41
32886316--32886355	20	2.0	20	90	0	62	47	12	12	27	1.77
32886418--32886458	19	2.2	19	86	0	55	63	4	0	31	1.15
32886607--32886697	36	2.5	35	77	8	94	61	1	1	36	1.10
32886702--32886848	19	7.7	19	65	14	63	64	2	4	28	1.25
32886679--32886735	20	2.8	20	76	15	53	68	1	3	26	1.15
32886703--32886806	27	4.0	27	72	17	87	63	1	4	29	1.26
32886662--32886789	9	13.6	9	67	18	57	64	0	3	31	1.17
32886984--32887075	39	2.4	38	81	3	94	36	3	1	58	1.21
32887056--32887103	19	2.7	17	78	15	53	35	2	0	62	1.07
32893820--32893854	18	1.9	18	88	0	52	20	37	8	34	1.83
32895607--32895704	22	4.7	22	73	14	100	14	18	31	35	1.91
32895587--32895675	38	2.3	38	90	0	133	12	20	31	35	1.89
32899418--32899454	16	2.2	17	86	13	51	2	0	18	78	0.87
32908261--32908331	35	2.0	35	88	0	106	35	9	23	30	1.88
32912816--32912885	35	2.0	35	91	0	113	34	7	25	32	1.83
32915139--32915414	21	13.1	21	70	4	180	47	15	20	16	1.83
32915139--32915401	42	6.3	41	84	2	283	47	16	20	15	1.83
32915139--32915408	84	3.2	83	83	4	335	47	15	21	15	1.83
32917790--32917830	18	2.2	18	86	4	55	21	21	0	56	1.43
32918484--32918522	19	2.1	18	85	4	51	33	17	0	48	1.48
32918928--32918971	9	4.8	9	81	15	54	0	25	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32918929--32918971	15	3.0	15	86	10	63	0	23	0	76	0.78
32925262--32925347	28	3.0	28	75	11	68	48	0	11	39	1.40
32925282--32925350	27	2.4	29	78	7	79	47	0	10	42	1.37
32925294--32925358	27	2.4	25	76	20	69	50	1	9	38	1.44
32927140--32927247	45	2.4	45	85	1	137	25	27	21	25	1.99
32927366--32927713	50	7.0	50	73	5	265	27	18	20	33	1.96
32927381--32927667	100	2.9	100	88	1	414	25	17	21	34	1.96
32927383--32927713	100	3.3	99	83	4	405	26	19	20	33	1.96
32927837--32928158	45	7.2	45	87	2	450	30	24	17	27	1.97
32927837--32928144	90	3.4	90	91	0	501	30	24	17	27	1.97
32929331--32929388	17	3.3	18	76	13	59	0	17	3	79	0.87
32929331--32929375	6	7.8	6	83	11	51	0	15	2	82	0.77
32929336--32929385	22	2.2	23	82	10	59	0	18	4	78	0.91
32929823--32929872	7	6.9	7	80	17	57	8	6	2	84	0.86
32929821--32929884	30	2.2	29	84	10	87	6	7	1	84	0.84
32932591--32932644	24	2.2	25	83	3	65	46	7	20	25	1.77
32933574--32933656	25	3.4	24	65	22	64	62	10	10	15	1.54
32933580--32933678	49	2.0	49	100	0	198	58	12	14	15	1.63
32934999--32935067	27	2.4	29	80	7	88	46	0	10	43	1.37
32934998--32935075	27	2.9	25	78	17	77	48	1	8	41	1.43
32935639--32935668	11	2.7	11	94	0	51	6	53	26	13	1.64
32939505--32939538	17	2.0	17	88	0	50	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32939672--32939765	41	2.3	41	73	12	95	51	3	0	45	1.17
32939902--32939939	17	2.2	17	86	9	51	34	5	0	60	1.19
32939911--32939952	17	2.5	17	80	3	50	35	4	4	54	1.42
32943032--32943071	18	2.2	19	91	8	66	65	2	0	32	1.06
32944909--32945031	34	3.6	34	82	0	156	45	16	8	30	1.76
32949917--32949974	31	1.9	29	82	6	71	39	3	5	51	1.41
32952714--32952762	16	3.1	15	77	13	53	6	14	0	79	0.91
32953629--32953722	47	2.0	47	95	0	170	34	10	8	46	1.69
32958431--32958497	34	2.0	34	88	2	100	50	1	7	40	1.39
32958807--32958850	21	2.0	24	86	13	67	40	2	4	52	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203