genome.fa.s17.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  143  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45580810--45580857	24	2.0	25	87	4	71	60	0	4	35	1.16
45581471--45581503	16	2.1	16	88	11	50	60	0	0	39	0.97
45581612--45581665	7	7.6	7	77	4	54	48	29	0	22	1.51
45581612--45581723	14	7.4	14	69	20	64	48	29	1	20	1.60
45581612--45581660	14	3.4	14	88	5	71	46	32	0	20	1.51
45581891--45582212	41	7.9	41	90	0	491	31	28	20	18	1.97
45582270--45582385	40	3.0	40	76	2	128	26	21	18	33	1.96
45582392--45582417	12	2.2	12	100	0	52	46	30	15	7	1.74
45591585--45591627	22	2.0	22	85	0	59	11	16	9	62	1.53
45593938--45593989	22	2.3	22	87	9	70	42	0	1	55	1.10
45593995--45594020	11	2.4	11	100	0	52	23	0	0	76	0.78
45593993--45594036	20	2.2	20	84	12	54	31	2	2	63	1.19
45593997--45594047	21	2.6	19	76	14	50	31	1	1	64	1.15
45594100--45594148	18	2.7	18	81	9	55	30	2	4	63	1.24
45598344--45598395	27	1.9	28	92	7	90	51	3	0	44	1.19
45598338--45598399	26	2.4	24	82	15	79	50	3	1	45	1.27
45602757--45602801	23	2.0	23	86	0	63	2	31	8	57	1.41
45602786--45602920	38	3.8	37	74	22	119	3	24	9	62	1.42
45602764--45602913	66	2.3	66	90	2	239	2	26	8	63	1.35
45603257--45603375	42	3.0	38	74	14	116	21	7	26	43	1.79
45604825--45604872	21	2.3	21	88	0	78	22	25	25	27	2.00
45607224--45607401	61	3.0	60	72	16	161	43	1	3	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45607316--45607374	26	2.3	25	85	8	82	40	0	1	57	1.09
45607329--45607384	15	4.0	15	73	17	57	44	0	0	55	0.99
45607355--45607422	22	3.2	22	69	23	65	42	2	0	54	1.15
45607301--45607441	17	8.6	17	67	24	63	44	1	0	53	1.14
45607669--45607736	16	4.2	16	92	0	118	35	36	0	27	1.58
45618429--45618466	14	2.8	13	92	7	67	47	5	10	36	1.61
45618724--45618897	32	5.2	33	81	8	208	18	21	17	42	1.89
45618724--45618894	67	2.6	67	94	0	288	18	21	17	42	1.90
45621695--45621739	20	2.1	22	84	12	58	13	11	8	66	1.44
45626382--45626650	35	8.0	34	85	6	334	18	22	18	40	1.91
45626377--45626640	102	2.6	102	92	1	426	18	23	18	40	1.91
45626377--45626650	67	4.0	68	89	4	342	18	22	17	41	1.90
45629451--45629495	20	2.1	22	84	12	58	13	11	8	66	1.44
45636874--45636970	44	2.3	42	83	7	115	24	19	27	27	1.99
45637809--45638017	22	9.5	22	85	3	260	28	9	18	44	1.80
45637809--45638089	44	6.6	44	82	8	285	28	8	18	44	1.79
45637809--45638089	66	4.4	66	79	9	285	28	8	18	44	1.79
45637982--45638053	36	2.0	36	94	0	126	26	5	20	47	1.72
45637961--45638075	58	2.0	58	87	0	167	28	7	19	44	1.78
45638018--45638089	22	3.3	22	84	0	90	26	6	20	45	1.76
45644127--45644236	42	2.6	43	84	4	134	28	16	24	30	1.96
45645025--45645359	22	15.2	22	80	3	343	29	9	18	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45645022--45645359	44	7.7	43	85	2	379	29	9	18	42	1.82
45651523--45651570	19	2.4	21	73	13	57	33	0	6	60	1.22
45653997--45654053	30	2.0	28	83	13	71	40	3	5	50	1.42
45655704--45655747	22	2.0	23	86	13	65	56	2	2	38	1.24
45656149--45656203	9	6.2	9	75	10	51	56	1	1	40	1.21
45656157--45656230	28	2.7	28	91	4	116	58	1	2	37	1.21
45656242--45656324	19	4.2	20	75	11	73	66	1	4	27	1.19
45656268--45656352	39	2.2	38	83	8	100	68	1	5	24	1.19
45656290--45656355	32	2.1	33	83	13	86	72	1	4	21	1.10
45656528--45656564	9	4.1	9	92	0	65	45	13	10	29	1.77
45656748--45656807	30	2.0	31	86	3	86	20	36	0	43	1.52
45662857--45662953	49	2.0	49	89	0	149	25	26	6	41	1.79
45664238--45664302	16	4.4	16	69	25	52	20	24	0	55	1.43
45664242--45664280	15	2.6	14	80	11	51	23	23	0	53	1.46
45664222--45664307	43	2.0	43	93	0	145	22	23	1	53	1.53
45665430--45665463	3	11.0	3	87	6	50	29	2	2	64	1.22
45666081--45666143	9	6.8	9	80	12	65	69	1	3	25	1.12
45666081--45666144	19	3.3	20	80	8	80	70	1	3	25	1.11
45666428--45666491	28	2.2	29	78	13	71	37	1	1	59	1.16
45666594--45666777	87	2.1	86	79	8	194	33	9	19	38	1.83
45667165--45667202	19	2.0	19	100	0	76	26	21	5	47	1.71
45669153--45669218	10	6.9	9	77	14	62	22	3	4	69	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45670162--45670203	20	2.1	20	86	8	59	14	4	9	71	1.28
45670186--45670233	24	2.1	21	85	11	60	41	0	4	54	1.20
45672677--45672711	15	2.3	15	90	5	52	60	0	2	37	1.12
45674393--45674518	44	2.9	44	75	4	128	26	19	20	32	1.97
45674534--45674878	137	2.5	137	83	6	419	29	20	18	31	1.96
45674634--45674920	45	6.3	45	72	15	173	28	22	18	30	1.97
45674534--45674920	137	2.8	136	81	6	327	28	21	18	31	1.97
45675767--45675796	13	2.4	12	94	5	51	0	10	0	90	0.47
45675766--45675805	20	2.0	20	90	9	64	0	15	0	85	0.61
45675766--45675806	12	3.6	12	78	21	52	0	14	0	85	0.60
45679340--45679439	42	2.4	42	91	0	155	26	26	10	38	1.87
45684079--45684116	18	2.1	18	90	0	58	65	2	7	23	1.32
45684079--45684125	18	2.6	18	83	6	51	68	2	6	23	1.24
45688488--45688617	44	3.0	43	77	12	117	22	19	21	36	1.95
45688651--45688787	43	3.2	43	63	6	105	21	21	22	33	1.97
45688667--45688802	44	3.1	44	64	2	112	22	25	19	33	1.97
45688858--45689081	44	5.1	44	71	10	199	23	23	21	31	1.98
45688823--45689045	43	5.1	42	70	10	135	23	21	23	31	1.98
45688575--45689080	87	5.8	87	89	0	699	22	23	21	32	1.98
45689011--45689146	66	2.1	66	88	0	200	21	25	17	36	1.95
45688919--45689210	153	1.9	153	87	1	424	23	21	21	32	1.98
45697255--45697294	20	2.0	20	86	13	57	40	10	22	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45704920--45704967	19	2.6	18	84	12	62	43	0	2	54	1.12
45705015--45705053	20	1.9	21	84	5	53	41	0	7	51	1.31
45706457--45706501	22	2.0	22	91	0	72	22	0	24	53	1.46
45706467--45706532	29	2.2	28	84	12	80	19	0	28	51	1.47
45706485--45706532	16	3.2	16	77	14	57	18	0	29	52	1.46
45709745--45709821	14	5.0	15	71	20	52	42	15	9	32	1.78
45709761--45709800	20	2.0	20	90	0	62	50	12	10	27	1.72
45709749--45709815	34	1.9	35	90	3	109	46	13	8	31	1.74
45709784--45709823	14	2.9	14	84	0	53	42	17	7	32	1.77
45713065--45713103	5	7.8	5	100	0	78	41	0	20	38	1.53
45720952--45721004	26	2.0	26	100	0	106	33	11	18	35	1.87
45721730--45721839	43	2.5	43	83	4	141	25	24	19	30	1.98
45722696--45722817	63	1.9	63	91	0	199	19	7	22	50	1.73
45728797--45728882	35	2.5	35	82	0	109	11	25	20	41	1.86
45728820--45728894	35	2.1	35	82	4	89	18	21	16	44	1.87
45731277--45731469	61	3.2	61	86	0	260	30	15	26	27	1.96
45731277--45731493	61	3.5	60	83	3	256	29	15	28	26	1.96
45736203--45736238	18	2.0	18	89	10	56	27	11	0	61	1.30
45740578--45740726	49	2.9	51	84	9	205	32	2	25	39	1.70
45740578--45740734	51	3.1	51	83	9	212	32	2	25	39	1.69
45757488--45757548	25	2.5	25	86	2	88	22	21	22	32	1.98
45773592--45774291	375	1.9	375	89	1	1107	38	23	12	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45779681--45779712	2	16.0	2	100	0	64	0	50	0	50	1.00
45782819--45782851	15	2.3	15	89	5	50	66	0	0	33	0.92
45784590--45784646	30	1.9	30	88	0	87	33	22	12	31	1.91
45789314--45789386	7	10.3	7	78	15	53	20	1	0	78	0.83
45789328--45789426	34	3.0	32	82	11	121	24	4	0	71	1.03
45789331--45789398	20	3.4	20	81	16	79	23	1	0	75	0.89
45789327--45789426	7	14.3	7	80	18	95	24	4	0	72	1.02
45789350--45789427	30	2.8	29	90	7	117	24	5	0	70	1.07
45790578--45790779	110	1.8	111	92	1	343	30	13	24	31	1.94
45792409--45792519	49	2.2	50	85	4	145	35	2	53	9	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203