genome.fa.s17.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  140  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44455956--44456014	31	1.9	31	86	10	86	38	3	20	37	1.69
44464904--44464945	20	2.1	20	90	0	66	40	21	19	19	1.92
44469225--44469404	43	4.2	43	77	3	191	21	19	23	36	1.95
44469229--44469388	86	1.9	86	86	0	230	22	21	21	35	1.96
44473097--44473235	43	3.2	43	89	1	197	26	20	20	33	1.97
44473408--44473438	12	2.6	12	100	0	62	22	6	9	61	1.50
44475570--44475756	40	4.7	40	82	3	225	18	26	19	35	1.95
44487492--44487584	45	2.1	45	93	0	159	24	24	15	35	1.94
44496027--44496091	33	2.0	33	90	0	103	26	33	13	26	1.94
44497994--44498211	51	4.3	51	77	5	244	26	16	27	30	1.97
44504505--44504542	17	2.3	17	86	13	53	55	7	13	23	1.64
44505475--44505563	37	2.4	37	98	0	169	25	22	14	37	1.92
44513672--44513849	27	6.6	27	83	3	205	26	15	28	29	1.96
44513673--44513828	82	1.9	81	88	3	233	26	15	28	29	1.96
44513669--44513849	82	2.2	81	83	2	229	27	15	27	29	1.96
44521862--44522039	27	6.6	27	83	3	205	26	15	28	29	1.96
44521863--44522018	82	1.9	81	88	3	233	26	15	28	29	1.96
44521859--44522039	82	2.2	81	83	2	229	27	15	27	29	1.96
44525775--44525821	17	2.8	16	84	9	58	34	29	19	17	1.94
44529700--44529749	2	25.0	2	95	0	91	52	0	48	0	1.00
44530579--44530629	14	3.5	15	86	10	79	7	33	0	58	1.27
44532261--44532326	32	2.1	32	94	5	116	31	6	22	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44534808--44534953	27	5.3	27	69	15	111	40	20	13	25	1.89
44534804--44534964	55	2.9	55	97	0	295	42	18	14	24	1.88
44535105--44535185	26	3.1	26	90	0	117	22	20	20	35	1.96
44538833--44538927	32	3.0	32	100	0	190	37	11	18	31	1.87
44542847--44542895	24	2.0	24	100	0	98	38	12	24	24	1.90
44543600--44543696	32	3.0	32	100	0	194	37	12	18	31	1.88
44545110--44545232	3	41.3	3	87	1	176	1	1	30	66	1.10
44550256--44550310	15	3.8	14	80	7	65	74	1	21	1	1.01
44558270--44558351	41	2.0	41	92	0	137	25	21	20	31	1.98
44558859--44558941	26	3.2	25	86	3	103	40	6	25	27	1.79
44558889--44558948	26	2.5	22	71	19	57	31	8	26	33	1.86
44562491--44562542	21	2.5	21	69	12	52	30	0	9	59	1.29
44569797--44569971	56	3.1	56	99	0	341	25	19	17	37	1.93
44569831--44569918	28	3.2	27	62	23	65	27	18	15	38	1.91
44572626--44572653	13	2.2	13	100	0	56	14	7	14	64	1.48
44577285--44577325	19	2.2	19	95	0	73	2	26	4	65	1.25
44580065--44580144	25	3.2	25	89	1	117	27	20	20	32	1.97
44584003--44584389	40	9.7	40	99	0	765	21	27	20	29	1.98
44595492--44595546	27	2.0	27	92	0	92	52	7	5	34	1.52
44604546--44604612	26	2.5	26	87	2	89	26	20	16	35	1.94
44606206--44606295	28	3.2	28	90	1	146	21	24	22	32	1.98
44613926--44614006	26	3.1	26	89	0	117	18	18	25	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44614112--44614174	28	2.2	28	97	0	117	20	25	22	31	1.98
44614102--44614188	28	2.8	31	77	15	90	22	24	21	31	1.99
44619112--44619389	41	6.6	39	77	11	160	21	17	26	33	1.96
44619145--44619389	82	2.9	81	84	8	303	20	17	26	34	1.96
44619782--44619833	22	2.4	22	90	3	79	21	0	42	36	1.53
44619795--44619844	14	3.5	14	79	15	57	24	0	44	32	1.54
44620042--44620086	15	3.0	15	90	0	63	20	0	35	44	1.51
44620037--44620100	22	2.9	22	77	9	67	21	0	29	48	1.51
44620059--44620105	14	3.3	14	90	3	67	23	0	25	51	1.49
44620044--44620105	15	4.3	14	85	6	61	22	0	27	50	1.50
44620067--44620112	14	3.2	14	87	3	56	23	2	21	52	1.58
44620801--44620832	16	2.0	16	93	0	55	46	21	0	31	1.52
44622738--44622775	13	3.0	13	92	3	60	28	7	42	21	1.81
44625304--44625337	16	2.1	16	88	0	50	35	0	8	55	1.31
44625425--44625569	44	3.3	44	82	5	179	29	19	24	26	1.98
44629820--44630024	29	7.1	29	78	7	175	25	13	22	37	1.91
44629839--44630006	58	2.9	58	94	0	282	24	14	22	38	1.92
44629801--44630006	87	2.4	87	82	2	236	24	14	23	37	1.92
44631891--44632068	27	6.6	27	84	3	205	29	28	15	26	1.96
44631912--44632067	82	1.9	81	88	3	233	29	28	15	26	1.96
44640081--44640258	27	6.6	27	84	3	205	29	28	15	26	1.96
44640102--44640257	82	1.9	81	88	3	233	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44643880--44644070	29	6.6	29	77	5	145	36	14	26	22	1.92
44643905--44644101	87	2.2	89	83	5	240	36	13	26	22	1.92
44644060--44644143	29	2.8	30	82	5	82	32	13	27	27	1.93
44643827--44644132	117	2.6	117	82	3	364	34	13	27	24	1.93
44664869--44664939	29	2.3	31	79	16	85	30	8	8	52	1.62
44664999--44665031	15	2.2	15	89	10	50	42	0	0	57	0.98
44666655--44666731	3	25.7	3	94	0	136	66	0	33	0	0.92
44676343--44676597	27	9.5	27	82	1	271	40	18	20	20	1.92
44676743--44676817	26	2.9	27	82	4	73	18	21	21	38	1.93
44676771--44676821	26	2.0	26	92	0	84	13	21	25	39	1.90
44677323--44677366	21	2.1	21	100	0	88	31	27	4	36	1.77
44728485--44728659	39	4.5	39	83	1	208	33	21	29	16	1.94
44728511--44728659	78	1.9	78	90	2	237	33	21	29	15	1.94
44728516--44728622	20	5.5	19	64	5	61	31	22	30	14	1.94
44732822--44732855	16	2.2	16	89	5	52	50	14	8	26	1.72
44734528--44734596	20	3.3	20	76	7	75	14	15	26	43	1.85
44736393--44736557	45	3.6	45	85	0	204	36	24	12	25	1.91
44736893--44737096	25	8.4	25	85	5	215	38	18	23	20	1.93
44749669--44749742	20	3.7	20	74	1	76	21	25	13	39	1.90
44756327--44756393	20	3.3	20	72	0	71	22	28	13	35	1.92
44761995--44762210	108	2.0	108	96	0	396	33	22	16	27	1.95
44765025--44765327	146	2.1	145	85	7	409	42	9	4	43	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44765025--44765327	145	2.1	148	85	6	422	42	9	4	43	1.58
44767822--44767874	27	2.0	27	85	7	74	37	11	16	33	1.85
44767837--44767903	27	2.5	27	80	0	80	31	16	19	32	1.94
44775285--44775409	47	2.7	47	87	7	195	64	10	13	11	1.49
44775285--44775412	45	2.8	45	86	9	197	63	10	14	12	1.53
44795268--44795300	12	2.5	13	85	14	50	63	3	9	24	1.38
44797697--44797765	35	2.0	35	100	0	138	14	28	15	40	1.87
44800330--44800552	39	5.7	40	84	8	257	25	21	27	25	2.00
44800330--44800552	79	2.8	81	83	9	273	25	21	27	25	2.00
44800330--44800585	79	3.3	79	81	10	208	26	21	27	24	1.99
44803450--44803733	142	2.0	142	96	0	523	23	22	25	27	2.00
44810194--44810888	347	2.0	347	96	0	1284	31	7	17	44	1.76
44817989--44818071	43	1.9	43	85	0	112	15	14	27	42	1.86
44818129--44818289	61	2.6	61	85	4	209	31	16	23	28	1.96
44818126--44818332	61	3.4	60	80	9	199	32	15	21	29	1.95
44823042--44823128	44	2.0	43	95	0	147	34	19	17	27	1.94
44829852--44829967	30	4.0	28	81	8	133	27	25	26	20	1.99
44830079--44830155	26	3.0	26	82	0	109	38	25	20	14	1.91
44830337--44830530	27	7.2	27	82	3	230	25	14	15	44	1.85
44834219--44834411	63	3.1	62	84	5	235	30	27	16	25	1.96
44849344--44849403	25	2.4	25	83	10	70	23	6	0	70	1.11
44849357--44849408	6	8.3	6	78	16	52	21	3	0	75	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44849853--44849887	9	4.0	9	85	7	54	88	0	0	11	0.51
44849861--44849885	10	2.5	10	100	0	50	92	0	0	8	0.40
44854273--44854300	5	5.6	5	100	0	56	82	0	0	17	0.68
44857609--44857643	18	2.0	17	88	5	52	45	0	0	54	0.99
44857756--44857790	18	2.0	17	88	5	52	45	0	0	54	0.99
44857952--44858046	45	2.1	45	86	1	129	33	26	5	34	1.79
44858027--44858078	16	3.2	16	91	0	77	36	34	0	28	1.58
44858480--44858528	17	2.7	18	81	15	57	44	6	2	46	1.39
44859519--44859588	31	2.3	31	82	5	79	48	10	14	27	1.75
44864017--44864041	6	4.2	6	100	0	50	0	36	16	48	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203