genome.fa.s17.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  171  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54209664--54209692	13	2.1	14	93	6	51	20	6	20	51	1.70
54216832--54217059	27	8.4	27	76	7	196	27	13	17	42	1.86
54216846--54217082	81	2.9	81	81	5	273	27	12	17	42	1.85
54216874--54217080	27	7.7	27	82	3	238	27	12	17	42	1.86
54217464--54217513	21	2.3	21	83	10	57	58	10	12	20	1.62
54218489--54218529	20	2.0	21	86	13	59	34	7	0	58	1.26
54218554--54218749	98	2.0	98	98	0	383	37	10	2	50	1.49
54222017--54222200	40	4.6	41	81	12	208	25	22	27	25	2.00
54222017--54222200	79	2.3	81	82	11	222	25	22	27	25	2.00
54222069--54222233	79	2.1	79	81	8	185	26	20	27	25	1.99
54227896--54227939	23	2.0	22	90	4	70	56	2	6	34	1.38
54228035--54228110	36	2.1	36	80	11	84	51	1	9	38	1.42
54228631--54228688	22	2.7	21	76	10	53	43	17	3	36	1.66
54246127--54246155	14	2.0	15	93	6	51	6	0	17	75	1.01
54248792--54248943	27	5.6	27	93	3	241	26	13	28	30	1.94
54248792--54248943	55	2.8	55	94	0	259	26	13	28	30	1.94
54273369--54273394	13	2.0	13	100	0	52	46	0	0	53	1.00
54274246--54274314	35	2.0	35	91	0	111	31	30	7	30	1.84
54289678--54289725	18	2.6	18	83	6	60	50	2	4	43	1.33
54289740--54289787	22	2.3	21	85	7	62	27	4	8	60	1.44
54291324--54291356	5	6.6	5	92	0	57	18	3	0	78	0.87
54300330--54300391	23	2.7	23	87	0	88	29	6	27	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54323001--54323046	21	2.1	22	84	4	58	67	2	23	6	1.25
54326763--54327037	119	2.3	120	85	6	353	33	14	29	22	1.93
54326765--54327039	80	3.5	79	82	4	320	33	13	29	23	1.93
54326974--54327038	20	3.2	20	63	16	53	27	13	35	23	1.93
54326763--54327047	40	7.2	40	82	1	286	33	14	29	22	1.94
54338498--54338574	25	3.1	25	82	0	100	27	23	23	25	2.00
54338502--54338584	25	3.3	25	77	15	82	28	22	21	26	1.99
54346712--54347149	138	3.0	142	79	10	428	40	8	5	44	1.58
54355057--54355116	28	2.1	28	82	11	70	30	5	20	45	1.72
54355404--54355481	24	3.3	23	80	12	86	26	21	19	32	1.97
54356421--54356445	12	2.1	12	100	0	50	36	16	24	24	1.94
54360110--54360203	24	3.9	24	88	0	143	22	22	25	29	1.99
54361648--54361717	27	2.6	27	81	0	86	41	24	20	14	1.89
54375915--54375943	15	1.9	15	100	0	58	51	6	20	20	1.70
54376159--54376200	20	2.2	20	95	4	77	64	0	0	35	0.94
54380652--54380678	14	1.9	14	100	0	54	37	7	0	55	1.28
54383040--54383080	2	20.5	2	94	0	73	0	48	2	48	1.14
54383166--54383217	5	10.4	5	85	0	68	25	55	0	19	1.43
54384279--54384340	30	2.1	30	87	0	88	41	0	38	19	1.51
54384956--54384984	13	2.1	14	93	6	51	31	20	20	27	1.98
54389301--54389346	21	2.2	21	84	7	58	43	0	13	43	1.43
54393222--54393260	20	2.0	20	90	5	62	33	7	28	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54397573--54397819	50	4.8	50	78	7	212	27	21	27	23	1.99
54399273--54399323	26	1.9	26	88	4	75	31	5	9	52	1.58
54399455--54399486	15	2.1	15	94	0	55	15	6	9	68	1.36
54402981--54403031	24	2.1	25	85	3	68	54	1	5	37	1.36
54403428--54403525	48	2.0	48	88	0	142	40	3	4	52	1.36
54403438--54403538	48	2.2	46	81	8	109	42	2	4	49	1.39
54407729--54408242	257	2.0	257	99	0	1019	21	15	19	43	1.88
54414370--54414442	29	2.5	29	95	0	128	31	9	13	45	1.76
54417702--54417787	27	3.2	26	87	8	127	24	11	20	43	1.85
54419986--54420096	56	2.0	56	98	0	213	36	10	18	35	1.85
54425517--54425568	25	2.1	25	100	0	104	25	19	19	36	1.95
54426354--54426458	43	2.4	43	77	12	108	33	23	21	20	1.97
54427698--54427809	25	4.5	24	76	13	93	23	22	20	33	1.97
54427686--54427834	50	3.0	50	83	2	156	25	24	19	30	1.98
54427721--54427829	25	4.4	25	71	17	75	26	24	17	31	1.97
54427731--54427849	50	2.4	50	83	5	134	28	24	15	31	1.95
54427991--54428024	17	2.0	17	100	0	68	47	11	17	23	1.81
54435295--54435331	16	2.3	16	90	0	65	56	0	27	16	1.40
54436823--54436861	18	2.2	17	86	13	53	33	0	20	46	1.51
54437087--54437162	23	3.3	23	92	0	134	21	19	26	32	1.97
54439089--54439234	42	3.5	41	79	3	157	41	21	15	21	1.89
54442721--54442783	30	2.1	30	84	0	81	23	3	14	58	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54448782--54448827	23	2.0	23	100	0	92	30	17	8	43	1.79
54453634--54453700	34	1.9	35	90	3	109	46	10	8	34	1.70
54455674--54455762	29	3.0	29	73	1	79	23	14	22	39	1.91
54457974--54458041	34	2.0	34	82	5	84	29	19	23	27	1.98
54459245--54459328	36	2.3	36	87	4	116	41	30	10	16	1.83
54473384--54473440	30	1.9	30	85	7	80	29	17	8	43	1.79
54480585--54480706	23	5.3	23	87	0	181	22	21	25	30	1.99
54480587--54480706	46	2.6	46	94	0	204	22	21	25	30	1.99
54489463--54489638	41	4.3	41	94	0	307	23	28	19	28	1.98
54495852--54495889	9	4.1	10	83	16	55	60	0	18	21	1.36
54499291--54499523	42	5.6	42	96	1	393	27	19	28	24	1.99
54509026--54509050	11	2.3	11	100	0	50	36	0	24	40	1.55
54521136--54521209	22	3.3	22	71	5	60	40	20	21	17	1.91
54521201--54521368	32	5.3	32	83	0	212	38	19	19	22	1.93
54521202--54521372	64	2.7	64	87	0	245	38	18	19	22	1.93
54521543--54521652	24	4.6	24	87	0	139	46	18	8	27	1.77
54521671--54521925	27	9.4	27	87	1	336	27	25	16	31	1.96
54521911--54521989	27	3.0	27	83	9	90	22	18	17	40	1.91
54521671--54521977	81	3.8	80	83	6	309	26	23	16	32	1.96
54526305--54526367	23	2.6	25	74	18	71	61	9	6	22	1.49
54526305--54526367	24	2.6	24	75	22	69	61	9	6	22	1.49
54534945--54534990	23	1.9	25	86	8	69	21	2	4	71	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54534945--54535228	26	11.1	26	74	13	170	28	3	4	64	1.29
54535006--54535146	50	2.7	50	82	12	144	31	2	2	64	1.17
54534985--54535148	73	2.2	77	80	9	187	30	2	3	64	1.22
54534969--54535228	55	5.1	52	74	15	177	28	3	4	63	1.29
54534979--54535208	81	3.0	80	80	7	215	29	3	4	63	1.29
54535345--54535403	27	2.2	27	78	6	66	20	6	6	66	1.39
54541396--54541706	45	7.0	44	73	11	184	29	16	22	31	1.96
54541455--54542022	44	12.5	45	71	12	225	32	17	20	29	1.96
54541422--54541706	89	3.2	89	72	13	294	30	15	23	30	1.95
54541409--54541853	180	2.5	181	86	3	601	31	16	20	31	1.95
54541723--54542032	44	7.0	44	74	7	241	32	18	20	28	1.96
54541783--54542032	132	1.8	133	84	5	340	33	18	21	27	1.96
54547230--54547280	20	2.5	21	78	12	52	41	13	19	25	1.88
54563846--54563885	18	2.2	18	86	0	53	65	2	25	7	1.32
54568544--54568867	107	3.0	107	85	0	441	28	16	16	38	1.90
54573078--54573147	20	3.2	21	73	16	61	47	12	22	17	1.81
54575641--54575688	16	3.0	16	81	0	60	14	22	25	37	1.92
54587327--54587516	40	4.8	40	98	0	362	23	20	24	31	1.98
54587327--54587554	120	1.9	119	88	3	341	23	21	25	29	1.99
54587331--54587581	120	2.1	119	85	3	326	22	21	26	29	1.99
54589737--54589840	20	5.1	21	74	11	83	39	21	30	8	1.83
54593577--54593775	99	2.0	100	95	1	355	31	11	8	48	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54596507--54596531	13	1.9	13	100	0	50	44	16	16	24	1.86
54596765--54596809	22	2.0	22	87	8	65	48	17	0	33	1.48
54600892--54602012	561	2.0	561	99	0	2233	33	18	19	29	1.95
54608347--54608371	11	2.3	11	100	0	50	28	0	0	72	0.86
54608602--54608656	23	2.4	24	72	9	60	49	0	10	40	1.38
54611747--54611775	14	2.1	14	100	0	58	27	6	20	44	1.77
54616558--54616583	8	3.2	8	100	0	52	65	0	0	34	0.93
54617290--54617347	30	1.9	30	85	0	80	50	12	8	29	1.69
54620117--54620380	40	6.6	40	87	6	349	25	22	27	24	2.00
54620117--54620413	159	1.9	159	82	6	379	26	22	26	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203