genome.fa.s17.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  2  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308148--308172	12	2.1	12	100	0	50	32	16	8	44	1.76
311116--311166	17	3.1	17	80	13	61	56	0	27	15	1.39
326918--326961	20	2.2	21	88	8	65	43	20	6	29	1.78
328326--328878	131	4.3	129	80	6	581	38	13	14	32	1.85
334025--334062	19	2.0	20	94	5	69	18	34	10	36	1.85
340150--340339	72	2.6	72	89	2	283	30	30	15	23	1.96
345670--345725	30	1.9	28	82	13	69	60	10	14	14	1.58
347475--347546	33	2.2	33	87	5	101	11	27	6	54	1.61
348732--348762	2	15.5	2	100	0	62	0	48	0	51	1.00
349862--350016	72	2.1	73	87	1	222	32	28	12	25	1.93
353308--353407	41	2.5	40	78	13	100	67	5	11	17	1.39
357534--357644	58	1.9	58	94	0	195	18	13	20	46	1.83
361211--361252	21	2.0	21	90	0	66	40	23	0	35	1.55
364537--364576	18	2.2	18	86	4	53	12	27	0	60	1.33
365405--365443	15	2.7	15	92	4	62	17	12	5	64	1.46
365480--365538	13	4.7	13	91	4	95	20	1	5	72	1.12
365480--365538	25	2.4	25	91	5	93	20	1	5	72	1.12
368311--368368	19	2.9	21	73	17	61	5	20	3	70	1.21
369432--369475	22	2.0	22	95	0	79	34	4	36	25	1.76
370547--370605	30	2.0	30	83	6	75	28	15	25	30	1.96
378451--378493	20	2.2	20	92	8	72	37	2	18	41	1.63
379931--380047	41	2.7	43	88	3	157	29	23	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379936--380054	44	2.8	41	83	7	157	27	21	23	26	1.99
380136--380886	50	15.1	50	69	6	353	25	22	22	30	1.99
380108--380886	100	7.8	99	82	4	890	25	22	22	30	1.99
382133--382179	5	9.0	5	84	11	51	0	17	4	78	0.90
385368--385424	19	2.9	20	79	10	64	45	12	17	24	1.83
387725--387767	18	2.2	20	92	8	72	37	0	18	44	1.50
398657--398690	14	2.5	13	86	9	50	73	5	8	11	1.24
398767--398796	15	1.9	16	93	6	53	66	6	10	16	1.41
398756--398799	16	2.7	15	82	10	52	72	6	9	11	1.27
406043--406250	102	2.0	102	98	0	398	27	12	14	45	1.81
414928--415013	33	2.5	33	83	7	93	56	5	26	10	1.55
429900--429985	45	1.9	45	81	9	104	13	26	1	58	1.43
429978--430052	12	6.2	12	68	10	55	10	14	4	70	1.29
430006--430052	18	2.6	18	79	0	58	12	12	2	72	1.21
430967--431014	19	2.5	19	86	3	60	27	10	0	62	1.27
438046--438230	79	2.3	81	83	7	227	24	22	27	24	2.00
438047--438230	40	4.6	40	82	9	207	25	22	27	24	2.00
438047--438263	79	2.7	79	80	7	192	26	22	27	23	1.99
448940--448988	20	2.5	20	86	0	71	26	32	14	26	1.94
456558--456661	44	2.3	46	86	8	142	46	9	8	35	1.68
459786--459863	6	12.8	6	72	16	54	7	17	0	74	1.05
459778--459822	20	2.2	20	88	7	65	6	20	0	73	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459802--459863	24	2.6	24	75	14	65	9	19	0	70	1.14
460844--461455	306	2.0	306	98	0	1179	30	25	16	27	1.97
463369--463497	48	2.5	52	77	13	140	13	25	3	58	1.50
463485--463516	15	2.1	16	94	5	57	6	21	0	71	1.07
464460--464513	12	4.4	12	81	4	63	14	3	3	77	1.04
464455--464505	13	4.0	13	85	12	70	19	7	1	70	1.21
466223--466255	13	2.5	13	100	0	66	75	6	6	12	1.16
466293--466345	27	2.0	27	100	0	106	69	0	11	18	1.17
466296--466345	13	3.8	13	89	5	82	74	0	10	16	1.08
466299--466345	12	3.7	12	84	15	67	76	0	8	14	1.01
468019--468110	46	2.0	46	97	0	175	21	14	23	40	1.90
471277--471773	250	2.0	250	99	0	985	29	24	15	30	1.96
472975--473085	26	4.3	26	94	0	168	36	22	6	34	1.80
474606--474658	25	2.0	25	85	7	70	30	9	1	58	1.40
474954--475006	26	2.0	26	82	7	63	22	9	3	64	1.40
481860--481890	16	1.9	16	93	0	53	51	22	9	16	1.73
483126--483168	16	2.7	16	92	0	68	51	18	20	9	1.74
483393--483454	29	2.1	29	84	0	79	29	12	25	32	1.93
487623--487665	16	2.7	16	85	7	52	55	13	20	9	1.66
487891--487997	29	3.7	29	76	7	103	27	13	31	28	1.93
494456--494481	12	2.2	12	100	0	52	69	7	0	23	1.14
496163--496200	19	2.1	19	85	9	53	7	23	2	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496194--496252	30	2.0	30	82	0	73	13	25	0	61	1.33
496320--496379	29	2.1	29	81	6	68	3	16	3	76	1.05
501616--501640	12	2.1	12	100	0	50	56	0	0	44	0.99
506620--506749	57	2.3	57	81	6	149	28	28	18	24	1.98
506648--506747	28	3.6	27	73	10	76	30	27	20	23	1.98
506759--507753	40	24.9	40	97	0	1841	25	27	22	24	2.00
509257--509993	47	15.7	47	93	1	1237	25	29	10	33	1.90
517584--517938	49	7.3	49	95	0	615	29	29	8	32	1.87
520143--520321	85	2.1	85	97	0	340	26	27	7	37	1.84
521771--521879	57	1.9	58	86	1	157	28	27	19	24	1.98
522091--522602	40	12.8	40	95	0	873	27	29	20	22	1.98
523852--523926	37	2.0	37	89	0	114	29	30	17	22	1.97
524138--524375	47	5.1	47	96	0	422	26	31	11	30	1.92
524936--525073	69	2.0	69	95	0	249	34	10	16	39	1.82
525898--526756	85	10.1	85	99	0	1709	26	26	8	38	1.84
531079--531138	28	2.2	26	77	11	66	26	26	11	35	1.91
531093--531164	28	2.6	28	88	0	99	29	27	12	30	1.93
533025--533334	48	6.5	47	77	5	271	24	27	19	28	1.98
533025--533305	96	2.9	96	85	2	341	25	28	17	28	1.98
533024--533334	144	2.2	143	83	5	378	24	27	18	28	1.98
533073--533334	96	2.7	97	83	2	305	24	27	18	29	1.98
539394--539657	46	5.7	46	79	10	211	24	29	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545705--545790	23	3.2	29	67	20	78	25	25	0	48	1.51
545698--545802	52	2.0	51	94	1	183	25	21	0	52	1.47
547626--547785	43	3.7	43	79	5	162	32	26	16	23	1.96
550141--550370	50	4.6	49	81	5	230	25	18	26	30	1.98
557615--557842	50	4.6	49	79	11	221	25	18	25	29	1.98
557942--557993	27	2.0	26	81	11	61	38	1	23	36	1.66
565847--566012	42	3.9	42	78	7	174	26	16	25	31	1.96
567273--567415	49	2.9	49	87	3	198	42	22	6	27	1.79
567317--567522	49	4.2	50	77	6	127	40	21	9	28	1.85
568351--568435	31	2.8	31	87	3	129	24	27	17	30	1.97
568654--568723	25	2.8	25	86	0	95	27	20	24	28	1.99
568771--568878	20	5.4	20	93	0	189	35	19	9	36	1.84
571106--571185	39	2.1	39	95	0	142	52	17	2	27	1.57
573106--573188	31	2.7	31	87	3	116	22	25	19	32	1.97
573409--573503	25	3.8	25	87	5	129	27	24	24	24	2.00
573409--573503	50	1.9	50	88	0	145	27	24	24	24	2.00
573551--573587	11	3.5	11	78	14	51	32	18	10	37	1.86
573551--573607	20	2.8	20	91	0	87	31	19	12	36	1.89
576551--576738	40	4.7	40	89	5	292	26	27	21	24	1.99
605257--605510	55	4.8	53	77	10	234	36	16	24	22	1.94
605264--605464	108	1.8	110	86	4	291	34	17	25	22	1.96
605580--605624	23	1.9	24	90	4	74	42	11	24	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605703--605733	16	1.9	16	93	0	53	41	0	22	35	1.54
611645--611749	50	2.1	50	89	3	158	42	14	26	16	1.86
617689--617775	43	2.0	43	85	12	117	28	29	18	22	1.97
624538--624702	42	3.9	42	78	4	170	27	15	25	31	1.96
624547--624702	86	1.8	83	82	4	195	28	16	25	29	1.97
624854--624885	16	1.9	17	93	6	57	31	9	15	43	1.78
633928--634380	47	9.6	47	91	1	690	28	29	8	33	1.86
633928--634380	96	4.8	96	93	1	702	28	29	8	33	1.86
633928--634380	143	3.2	141	91	1	699	28	29	8	33	1.86
637163--637194	6	5.3	6	92	0	55	81	0	0	18	0.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203