genome.fa.s17.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  35  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11596451--11596523	25	2.8	26	85	8	87	17	27	24	30	1.97
11599661--11599709	20	2.5	20	76	6	55	46	6	10	36	1.63
11608658--11608879	51	4.4	52	77	6	231	30	27	17	25	1.97
11609921--11609999	9	8.8	9	97	0	131	22	10	29	37	1.87
11610160--11610184	12	2.1	12	100	0	50	16	24	36	24	1.94
11612244--11612277	18	1.9	17	88	5	50	50	0	0	50	1.00
11612288--11612332	25	1.9	23	86	13	65	53	6	0	40	1.27
11613438--11613498	28	2.2	28	100	0	122	27	0	9	62	1.27
11617979--11618007	9	3.3	9	90	9	51	0	17	0	82	0.66
11622576--11622611	4	9.0	4	100	0	72	25	50	0	25	1.50
11627361--11627420	31	1.9	31	93	0	102	11	10	21	56	1.64
11627396--11627429	17	1.9	18	94	5	61	11	14	14	58	1.63
11631446--11631492	21	2.2	22	92	3	78	21	38	19	21	1.94
11636581--11636621	19	2.1	20	86	4	57	31	9	2	56	1.45
11643164--11643204	19	2.1	20	86	4	57	31	9	2	56	1.45
11645334--11645371	19	2.0	19	100	0	76	5	31	10	52	1.58
11648702--11648746	21	2.2	21	92	4	74	24	6	17	51	1.70
11650673--11650697	12	2.1	12	100	0	50	24	36	24	16	1.94
11650858--11650934	9	8.4	9	85	8	93	40	25	10	23	1.86
11650857--11650934	27	2.9	27	82	7	104	41	25	10	23	1.86
11651709--11651777	21	3.3	21	97	0	129	23	10	33	33	1.88
11655867--11655901	13	2.8	12	87	12	52	17	0	0	82	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11658278--11658316	20	1.9	21	89	5	62	41	15	2	41	1.61
11665430--11665519	32	2.8	32	66	14	78	44	11	11	33	1.75
11667452--11667495	17	2.5	17	85	7	52	50	13	2	34	1.55
11671438--11671494	20	2.8	20	86	2	78	15	22	17	43	1.87
11671502--11671575	37	2.0	37	89	0	112	13	16	32	37	1.87
11672132--11672161	15	2.1	14	93	6	51	53	3	0	43	1.17
11672405--11672535	66	2.0	65	98	0	244	37	0	40	21	1.53
11673602--11673743	75	1.9	75	89	0	221	21	23	23	31	1.98
11673611--11673782	75	2.3	75	83	4	204	23	25	22	28	1.99
11675492--11675581	19	4.8	19	87	10	116	37	7	16	37	1.78
11675493--11675555	21	3.1	21	93	4	103	38	7	14	39	1.75
11676311--11676435	25	5.0	25	72	13	105	32	7	4	55	1.48
11676297--11676445	74	2.0	75	97	1	282	33	7	5	53	1.51
11677107--11677301	98	2.0	98	94	0	345	28	10	24	36	1.88
11678980--11679048	11	6.5	11	77	19	76	60	0	1	37	1.06
11679006--11679066	11	6.4	9	80	10	52	68	0	0	31	0.89
11678976--11679037	28	2.1	29	91	5	99	62	0	1	35	1.05
11679015--11679080	28	2.2	30	81	13	82	62	0	1	36	1.05
11679470--11679512	20	2.2	20	86	0	59	23	20	0	55	1.43
11679484--11679526	20	2.2	20	82	0	50	18	13	2	65	1.38
11679841--11680241	20	20.9	20	67	13	128	20	14	10	54	1.69
11680908--11681025	20	5.8	20	70	8	87	60	8	8	22	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11684012--11684086	37	2.0	37	100	0	150	37	8	10	44	1.69
11684488--11684521	17	2.1	16	88	5	50	55	2	0	41	1.15
11686252--11686294	22	2.0	22	85	0	59	39	4	16	39	1.69
11692727--11692776	6	8.3	6	77	16	50	80	4	2	14	0.95
11692886--11692973	12	7.4	12	69	18	60	69	1	2	27	1.08
11703252--11703291	21	1.9	21	89	0	62	27	12	10	50	1.72
11725387--11725439	18	2.9	19	81	10	58	58	1	5	33	1.32
11726416--11726445	16	1.9	16	93	6	53	66	3	0	30	1.07
11726990--11727029	20	2.0	20	100	0	80	35	5	25	35	1.78
11729041--11729249	76	2.7	77	91	0	330	31	25	20	22	1.98
11729197--11729282	33	2.6	33	100	0	172	38	27	20	12	1.90
11735916--11735968	13	4.1	13	77	18	65	32	5	24	37	1.79
11740488--11740535	3	16.0	3	100	0	96	33	0	0	66	0.92
11742425--11742516	32	2.9	31	85	6	121	30	18	9	41	1.83
11742426--11742527	32	3.2	30	82	9	114	33	18	8	39	1.82
11743047--11743097	23	2.3	22	89	3	75	43	9	15	31	1.80
11743194--11743381	94	2.0	94	87	2	270	39	12	17	30	1.86
11743339--11744282	54	17.5	54	78	3	673	38	13	19	28	1.90
11743339--11744282	162	5.8	162	78	4	778	38	13	19	28	1.90
11746128--11746169	16	2.6	16	92	0	66	23	14	50	11	1.76
11763421--11763457	11	3.2	12	85	11	51	56	5	5	32	1.45
11767737--11767786	25	2.0	25	84	7	66	40	0	2	58	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11767713--11767831	19	5.8	19	73	15	69	36	0	1	60	1.13
11767769--11767840	20	3.7	20	80	10	85	36	0	4	59	1.17
11767755--11767831	39	1.9	42	84	12	108	40	0	2	57	1.13
11772857--11772902	23	2.0	23	100	0	92	21	8	26	43	1.81
11777745--11777791	21	2.2	22	92	3	78	21	19	38	21	1.94
11780955--11781001	21	2.2	22	92	3	78	21	19	38	21	1.94
11783913--11783944	16	2.0	16	100	0	64	50	0	25	25	1.50
11785273--11785332	20	3.0	20	87	2	75	58	16	5	20	1.56
11785883--11785920	19	2.1	19	85	5	51	52	2	10	34	1.50
11789361--11789440	20	4.0	20	80	3	81	53	16	10	20	1.70
11789360--11789435	40	1.9	40	83	5	100	52	15	9	22	1.71
11806422--11806464	21	2.1	20	83	12	52	53	11	9	25	1.67
11813499--11813539	20	2.0	20	100	0	82	65	9	0	24	1.22
11813902--11813942	19	2.2	19	86	0	55	9	12	4	73	1.24
11818529--11818553	3	8.3	3	100	0	50	36	0	0	64	0.94
11818596--11818628	3	11.0	3	100	0	66	33	0	0	66	0.92
11818529--11818670	75	1.9	75	100	0	284	36	1	11	50	1.47
11818529--11818704	75	2.4	72	90	7	255	35	1	11	51	1.45
11820830--11820857	9	3.1	9	100	0	56	46	10	10	32	1.73
11827877--11827944	29	2.3	29	83	14	86	51	2	4	41	1.37
11827877--11827944	30	2.3	30	85	12	88	51	2	4	41	1.37
11829322--11829614	33	10.1	32	75	22	249	21	1	36	40	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11829265--11829664	113	3.5	113	95	2	674	20	1	35	42	1.62
11829577--11829616	21	1.9	21	90	10	64	22	0	37	40	1.54
11829581--11829858	53	5.8	46	71	19	171	19	1	35	43	1.61
11829560--11829632	33	2.2	33	87	0	101	23	1	35	39	1.63
11829591--11829726	62	2.1	62	87	8	191	19	1	33	45	1.59
11829647--11829679	15	2.2	15	100	0	66	24	0	27	48	1.51
11829660--11829759	27	4.0	26	75	21	106	17	2	36	45	1.60
11829678--11829715	20	2.0	20	85	10	53	10	2	31	55	1.48
11829499--11829851	187	1.9	178	89	6	550	19	1	35	43	1.62
11829746--11829771	12	2.2	12	100	0	52	15	7	46	30	1.74
11829820--11829890	27	2.6	27	90	4	106	19	0	36	43	1.51
11829898--11829937	19	2.2	18	86	13	55	50	0	0	50	1.00
11830959--11830984	7	3.7	7	100	0	52	57	15	0	26	1.38
11832086--11832111	11	2.4	11	100	0	52	65	0	0	34	0.93
11832094--11832134	21	1.9	21	85	5	55	53	0	0	46	1.00
11832155--11832241	11	8.3	11	69	19	51	44	2	28	24	1.66
11832144--11832245	22	4.4	22	67	21	64	47	1	26	24	1.63
11832131--11832230	51	2.0	51	86	4	139	46	2	26	26	1.64
11833349--11833375	7	3.9	7	100	0	54	14	0	0	85	0.61
11833539--11833638	22	4.3	22	72	17	60	35	2	2	61	1.19
11833581--11833647	22	3.0	23	76	8	66	35	1	1	61	1.15
11842507--11842541	17	2.1	17	88	0	52	74	2	2	20	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11857752--11857822	34	2.1	34	100	0	142	35	19	9	35	1.85
11860010--11860179	17	10.0	17	77	5	146	23	6	22	47	1.74
11860010--11860179	51	3.3	51	86	0	214	23	6	22	47	1.74
11865857--11865905	25	2.0	25	95	0	89	32	20	20	26	1.97
11868111--11868175	33	2.0	32	96	0	112	20	33	10	33	1.87
11876472--11876511	14	2.9	14	84	0	53	32	7	17	42	1.77
11876494--11876533	20	2.0	20	85	0	53	32	12	12	42	1.80
11876481--11876546	35	1.9	34	90	3	105	31	10	15	42	1.81
11877791--11877825	18	1.9	18	88	0	52	45	0	54	0	0.99
11885034--11885067	6	5.7	6	96	0	59	50	17	29	2	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203