genome.fa.s17.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  190  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60485669--60485919	80	3.1	80	82	4	310	33	17	23	25	1.96
60485964--60486024	24	2.5	24	76	5	70	21	8	22	47	1.77
60486138--60486191	26	2.1	26	89	0	81	16	20	25	37	1.93
60486194--60486693	32	15.7	32	73	13	295	20	20	21	38	1.94
60486194--60486693	64	7.9	63	73	9	338	20	20	21	38	1.94
60486194--60486693	96	5.2	96	77	10	384	20	20	21	38	1.94
60486226--60486716	253	1.9	254	88	1	743	20	19	20	38	1.93
60486759--60486811	26	2.0	26	85	0	70	22	30	11	35	1.89
60486841--60486914	37	2.0	37	97	0	139	9	20	35	35	1.85
60499196--60499409	27	7.9	27	81	2	241	18	18	22	40	1.92
60499193--60499409	54	4.0	54	81	4	267	18	17	22	41	1.91
60500016--60500065	12	3.8	13	75	15	50	22	38	2	38	1.65
60502292--60502484	50	3.7	51	82	5	228	24	28	21	25	1.99
60503756--60503869	34	3.4	34	69	7	97	40	14	14	30	1.86
60511842--60511920	37	2.1	37	86	4	106	25	17	30	26	1.97
60514358--60514394	18	2.0	19	85	15	51	56	8	0	35	1.29
60519884--60519908	12	2.1	12	100	0	50	52	0	40	8	1.31
60532025--60532102	39	2.0	39	87	2	111	28	21	25	24	1.99
60531985--60532169	40	4.7	40	80	6	198	25	21	27	25	2.00
60532038--60532202	79	2.1	79	79	6	174	27	20	26	26	1.99
60534109--60534141	12	2.8	12	86	13	50	12	30	27	30	1.92
60538367--60538422	25	2.2	24	78	9	58	30	12	16	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60548624--60548960	173	2.0	165	84	7	432	25	29	22	21	1.99
60550065--60550183	25	4.7	23	78	17	114	22	21	26	29	1.99
60550065--60550181	50	2.3	50	88	2	173	23	22	25	29	1.99
60573622--60573738	42	2.8	40	82	7	144	34	20	18	26	1.96
60577293--60577359	35	1.9	35	93	0	116	46	13	5	34	1.68
60583350--60583500	43	3.5	43	79	4	155	34	23	13	28	1.93
60583337--60583457	42	2.9	42	81	1	143	33	25	13	27	1.93
60587649--60588176	49	10.9	49	97	1	965	30	8	30	29	1.87
60588296--60588374	37	2.1	37	90	0	122	24	18	31	25	1.98
60595809--60595941	68	2.0	68	95	1	241	45	10	7	36	1.67
60608469--60608516	11	4.3	11	81	5	51	62	2	2	33	1.18
60616942--60616988	24	2.0	24	95	0	85	44	14	8	31	1.76
60618042--60618104	20	3.2	20	83	0	72	31	19	34	14	1.91
60629456--60629497	11	3.8	11	75	12	50	42	16	7	33	1.75
60629456--60629636	22	8.2	22	80	2	202	41	18	10	29	1.83
60629456--60629639	66	2.8	66	83	0	224	41	17	10	29	1.83
60636589--60636964	22	17.1	22	82	1	457	40	17	12	29	1.86
60636589--60636967	44	8.6	44	90	0	580	40	17	12	29	1.86
60648533--60648604	32	2.2	33	82	12	94	50	0	2	47	1.15
60649501--60649535	17	2.0	17	88	5	52	17	5	0	77	0.96
60650010--60650035	11	2.4	11	100	0	52	23	7	7	61	1.49
60655428--60655477	25	2.0	25	88	7	75	40	10	10	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60661578--60661608	11	2.8	11	90	0	53	32	0	12	54	1.38
60665163--60665418	39	6.5	39	86	3	345	30	17	32	19	1.95
60665220--60665280	19	3.2	18	68	13	50	31	19	32	16	1.94
60671445--60671484	20	2.1	19	90	4	62	42	20	25	12	1.86
60674001--60674131	69	1.9	68	85	4	183	9	27	6	56	1.56
60674001--60674154	69	2.2	69	81	6	179	8	29	6	55	1.55
60684100--60684253	43	3.6	43	76	3	148	37	22	14	24	1.92
60687874--60687950	26	2.9	27	77	11	86	24	23	9	42	1.83
60688082--60688180	39	2.5	40	81	1	110	27	20	12	40	1.87
60689173--60689197	11	2.3	11	100	0	50	24	20	8	48	1.76
60692198--60692252	25	2.2	25	83	3	65	10	9	12	67	1.43
60693896--60693996	40	2.5	40	86	0	139	27	19	13	38	1.90
60701916--60701979	24	2.7	24	82	0	74	50	7	3	39	1.47
60702065--60702152	29	3.0	29	83	6	124	32	30	11	25	1.91
60705270--60705324	16	3.4	16	75	9	58	36	7	25	30	1.83
60705522--60705587	26	2.6	27	74	13	68	53	1	1	43	1.19
60705496--60705616	58	2.1	59	90	1	190	52	2	0	44	1.20
60705986--60706549	280	2.0	280	91	0	905	43	17	10	28	1.81
60712919--60712952	16	2.1	16	100	0	68	64	5	0	29	1.17
60714299--60714347	24	2.0	24	96	0	89	28	26	14	30	1.95
60715891--60715922	15	2.1	15	94	5	55	81	0	12	6	0.87
60719874--60719902	11	2.5	12	88	11	51	24	0	27	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60721031--60721109	37	2.1	37	90	0	122	25	31	18	24	1.98
60721227--60721384	49	3.2	48	95	2	273	30	31	7	31	1.85
60721655--60721712	24	2.5	23	81	16	66	32	5	0	62	1.18
60729467--60729705	32	7.5	32	74	1	167	37	22	20	19	1.94
60729494--60729705	64	3.3	64	80	5	250	36	23	20	18	1.95
60729493--60729702	96	2.2	95	79	3	224	37	23	20	19	1.94
60729721--60729776	27	2.1	27	80	12	62	32	19	26	21	1.97
60729923--60730346	27	15.7	27	81	3	451	22	21	19	36	1.95
60729923--60730346	81	5.2	81	83	1	512	22	21	19	36	1.95
60730308--60730360	27	2.0	27	88	7	81	20	20	16	41	1.90
60735355--60735411	22	2.7	21	78	10	53	71	1	1	24	1.04
60738913--60738979	22	2.8	24	72	18	61	64	7	5	22	1.42
60749440--60749527	32	2.9	30	83	5	88	47	1	14	36	1.52
60753820--60753865	21	2.2	21	88	0	65	34	6	26	32	1.82
60765018--60765073	20	2.8	19	75	17	60	42	12	8	35	1.74
60769104--60769130	12	2.2	12	100	0	54	51	7	0	40	1.30
60769577--60769674	27	3.5	28	90	2	135	26	13	28	31	1.94
60769605--60769687	27	3.0	27	87	5	96	30	12	25	32	1.92
60782199--60782381	45	4.1	45	83	4	212	21	15	28	34	1.94
60786339--60786462	29	4.3	28	79	4	115	29	13	22	34	1.93
60786334--60786475	58	2.4	58	80	10	164	28	14	21	35	1.92
60786380--60786475	29	3.3	29	79	5	115	27	15	21	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60786380--60786493	29	3.9	29	74	13	94	24	15	22	36	1.94
60788526--60788658	25	5.4	25	71	12	112	19	26	19	34	1.96
60788735--60788794	24	2.4	24	77	8	57	16	26	26	30	1.97
60790579--60790632	22	2.5	22	84	0	72	31	25	12	29	1.93
60791575--60791662	43	2.0	44	86	2	124	35	10	1	53	1.42
60793927--60793987	31	1.9	31	90	9	97	40	6	9	42	1.64
60794410--60794438	3	9.7	3	100	0	58	0	31	0	68	0.89
60798039--60798065	11	2.5	11	100	0	54	18	48	7	25	1.74
60800326--60800364	3	13.0	3	100	0	78	66	0	0	33	0.92
60808977--60809009	17	1.9	18	88	11	52	42	0	15	42	1.46
60839539--60839572	15	2.3	15	94	0	59	0	17	20	61	1.34
60840581--60840647	13	5.0	13	70	25	59	34	11	4	49	1.60
60840567--60840649	41	2.0	41	86	4	114	37	14	3	44	1.63
60843010--60843044	17	2.1	17	100	0	70	42	22	22	11	1.85
60843901--60844049	17	8.7	16	67	20	79	40	3	4	51	1.39
60854400--60854708	155	2.0	156	88	0	467	33	16	12	37	1.86
60854400--60854708	78	4.0	78	90	0	467	33	16	12	37	1.86
60854717--60854875	83	1.9	84	85	2	223	31	11	11	45	1.76
60856893--60856931	20	1.9	20	89	5	60	33	7	2	56	1.41
60857154--60857185	16	2.0	16	93	0	55	25	15	0	59	1.36
60857403--60857603	51	4.0	51	78	8	230	30	28	16	23	1.97
60857411--60857595	101	1.8	102	89	3	293	31	27	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60861853--60861897	22	2.0	22	100	0	90	35	22	4	37	1.74
60864463--60864653	51	3.8	51	78	8	210	32	26	16	24	1.96
60864463--60864543	12	6.3	13	68	30	50	35	29	12	22	1.91
60864460--60864683	101	2.2	102	79	4	238	31	26	16	25	1.96
60877009--60877067	24	2.5	24	88	0	91	32	16	20	30	1.95
60876883--60877146	130	2.0	129	84	2	350	29	15	18	36	1.92
60879074--60879099	3	8.7	3	100	0	52	65	0	0	34	0.93
60879782--60879831	17	3.0	17	77	13	50	2	16	6	76	1.08
60884277--60884327	24	2.1	24	88	0	75	29	11	21	37	1.89
60884410--60884473	16	4.0	16	81	0	74	28	17	21	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203