genome.fa.s17.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  181  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57396169--57396368	32	6.3	31	78	8	190	37	20	20	22	1.94
57396184--57396368	64	2.9	64	81	3	221	36	20	20	22	1.95
57396169--57396368	96	2.1	94	85	6	260	37	20	20	22	1.94
57396377--57396426	26	1.9	26	91	0	82	38	28	20	14	1.91
57396414--57396473	27	2.2	27	88	11	88	35	25	21	18	1.96
57396650--57397007	27	13.3	27	86	0	473	25	24	18	31	1.98
57397009--57397095	27	3.2	27	93	0	138	20	17	21	40	1.92
57399868--57400091	100	2.2	100	96	0	412	25	20	19	35	1.96
57404426--57404495	33	2.1	33	94	0	122	28	4	38	28	1.76
57415773--57415813	21	2.0	21	90	0	64	34	4	36	24	1.77
57423069--57423119	21	2.4	21	87	12	70	23	35	3	37	1.74
57423075--57423127	21	2.8	18	76	20	54	24	35	3	35	1.74
57431092--57431454	27	13.4	27	80	4	347	40	19	16	23	1.91
57431651--57431747	26	3.7	26	70	2	70	18	24	19	37	1.94
57431854--57431940	30	2.9	30	84	0	111	21	27	24	26	1.99
57432174--57432204	15	2.1	15	100	0	62	19	0	12	67	1.22
57454861--57454902	3	14.0	3	100	0	84	33	0	0	66	0.92
57455794--57455823	5	6.2	5	92	7	53	80	0	20	0	0.72
57482121--57482168	20	2.3	20	96	3	87	47	8	20	22	1.77
57483398--57483521	50	2.5	50	81	0	140	28	22	28	20	1.99
57490157--57490349	50	3.7	50	79	4	179	27	19	29	24	1.98
57508307--57508370	27	2.4	28	89	5	96	23	7	28	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57517996--57518063	25	2.6	25	77	11	66	67	0	26	5	1.13
57530398--57530426	13	2.1	14	93	6	51	51	0	0	48	1.00
57534775--57534992	95	2.3	95	99	0	427	35	5	16	42	1.73
57535731--57535798	34	2.0	35	82	5	86	27	23	25	23	2.00
57536507--57536558	26	2.0	26	88	0	77	34	13	15	36	1.87
57536510--57536566	26	2.2	26	83	0	69	38	10	17	33	1.84
57543462--57543529	34	2.0	34	82	5	84	35	23	20	20	1.96
57550944--57550970	12	2.2	12	100	0	54	51	7	0	40	1.30
57551454--57551631	27	6.6	27	83	3	205	26	15	28	29	1.96
57551455--57551610	82	1.9	81	88	3	233	26	15	28	29	1.96
57551451--57551631	82	2.2	81	83	2	229	27	15	27	29	1.96
57569495--57569541	24	1.9	24	86	4	67	36	0	36	27	1.57
57570149--57570530	27	14.2	27	79	4	369	43	24	17	15	1.87
57570156--57570530	81	4.6	81	82	1	414	43	24	17	15	1.87
57570156--57570530	54	7.0	53	82	2	412	43	24	17	15	1.87
57573126--57573587	27	17.2	27	79	2	401	41	22	17	17	1.90
57573983--57574073	28	3.3	28	89	1	130	27	26	24	21	1.99
57576228--57576450	27	8.4	27	78	6	224	40	19	18	20	1.91
57576831--57576938	28	3.9	28	78	4	119	24	24	25	26	2.00
57578406--57578620	27	8.0	27	76	7	177	41	18	17	22	1.90
57578449--57578619	54	3.2	54	82	3	202	40	18	18	21	1.91
57578452--57578619	81	2.1	81	87	2	239	41	19	18	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57579016--57579117	28	3.6	28	88	2	116	25	19	25	29	1.99
57579792--57580166	27	14.0	27	78	8	363	43	19	17	19	1.89
57580531--57580607	28	2.8	28	90	4	111	24	24	22	28	1.99
57581398--57581424	14	1.9	14	100	0	54	14	25	22	37	1.93
57585206--57585260	21	2.6	21	94	0	101	43	5	12	38	1.66
57585189--57585247	13	4.8	13	73	23	56	44	5	13	37	1.66
57585497--57585826	69	4.9	69	88	5	505	19	24	17	38	1.93
57585624--57585813	61	3.0	62	88	6	274	21	23	18	37	1.94
57585497--57585813	130	2.4	131	93	4	528	20	23	17	38	1.93
57588389--57588433	20	2.1	22	84	12	58	13	11	8	66	1.44
57609164--57609195	15	2.1	15	94	0	55	15	18	12	53	1.73
57610433--57610556	60	2.1	60	96	0	230	28	25	8	37	1.84
57614364--57614428	33	1.9	34	81	9	80	27	23	24	24	2.00
57614405--57614485	28	2.9	28	78	10	94	34	19	22	23	1.96
57614802--57614986	27	6.8	27	78	9	146	20	21	20	38	1.94
57614816--57614986	55	3.2	53	77	12	159	19	22	19	38	1.93
57614833--57614986	82	1.9	82	86	5	222	18	22	20	38	1.94
57620781--57620879	28	3.6	27	84	11	112	28	28	12	31	1.92
57627763--57627899	65	2.1	64	91	2	222	34	21	4	40	1.73
57627919--57628182	132	2.0	132	98	0	510	38	21	5	34	1.76
57631877--57631969	28	3.3	28	81	3	116	32	23	21	22	1.98
57637186--57637370	79	2.3	81	83	10	231	25	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57637186--57637370	40	4.6	41	80	14	217	25	27	22	25	2.00
57637379--57637700	160	2.0	162	95	1	585	38	21	9	30	1.86
57643505--57643557	25	2.1	25	82	6	63	37	22	0	39	1.54
57650251--57650335	42	2.0	43	88	2	127	25	20	2	51	1.59
57650326--57650847	130	4.0	130	99	0	1035	34	24	13	27	1.93
57651859--57651893	4	8.8	4	87	12	54	0	20	0	80	0.72
57651854--57651893	15	2.7	15	85	11	55	0	20	0	80	0.72
57656530--57656970	51	8.7	50	76	7	304	27	16	26	29	1.97
57656530--57656974	102	4.4	101	82	6	474	27	16	26	29	1.97
57656631--57656975	153	2.3	150	78	7	367	28	15	26	28	1.96
57660797--57660829	10	3.4	10	91	4	50	39	18	6	36	1.75
57669636--57669696	31	2.0	31	100	0	122	29	13	27	29	1.94
57684535--57684578	22	2.0	22	81	0	52	59	0	0	40	0.98
57704562--57704892	50	6.6	50	81	2	344	21	27	21	29	1.98
57704601--57704884	150	1.9	150	84	1	381	21	28	20	28	1.98
57708849--57708934	41	2.1	41	86	0	118	18	20	27	32	1.96
57715920--57715952	17	1.9	17	93	0	57	21	9	12	57	1.62
57721151--57721186	11	3.0	13	80	19	51	30	0	0	69	0.89
57729016--57729091	35	2.2	35	92	0	125	27	14	17	40	1.88
57733886--57734008	43	2.9	43	75	12	119	35	24	17	22	1.95
57733886--57734008	44	2.9	44	75	17	123	35	24	17	22	1.95
57734011--57734123	41	2.7	42	83	6	142	26	25	16	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57741524--57741636	41	2.7	42	78	9	124	28	23	15	32	1.95
57748804--57749161	146	2.4	148	87	7	508	32	9	6	52	1.59
57750001--57750038	18	2.1	19	85	5	51	18	2	5	73	1.14
57764063--57764113	17	3.2	16	86	8	77	11	0	15	72	1.12
57765995--57766042	21	2.3	21	85	7	62	29	18	10	41	1.84
57768921--57768999	38	2.1	38	92	0	131	51	3	5	39	1.42
57770625--57771195	99	5.7	100	90	1	833	22	21	24	31	1.98
57770625--57771195	299	1.9	300	88	1	869	22	21	24	31	1.98
57770636--57771198	50	11.3	50	75	1	477	22	20	24	32	1.98
57771399--57771493	44	2.2	44	88	3	138	30	24	18	26	1.98
57771504--57772114	44	13.9	44	64	8	152	28	24	17	28	1.98
57771440--57772115	132	5.1	131	86	3	894	28	24	18	28	1.98
57771922--57772131	44	4.8	44	71	5	165	27	25	18	29	1.98
57772111--57772429	45	7.2	45	75	3	286	26	25	18	29	1.98
57772146--57772400	44	5.7	45	75	8	130	27	24	17	30	1.97
57772111--57772429	89	3.6	89	75	2	336	26	25	18	29	1.98
57773718--57773766	7	7.0	7	80	15	57	14	14	0	71	1.15
57773718--57773757	13	3.0	13	88	3	53	12	15	0	72	1.12
57774637--57774764	12	10.4	12	74	9	62	10	9	7	73	1.25
57774730--57774763	6	5.7	6	100	0	68	14	0	14	70	1.17
57774695--57774771	18	4.4	17	72	6	64	11	6	10	71	1.30
57775542--57775598	25	2.2	25	84	9	71	54	5	17	22	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57784668--57784724	22	2.6	23	72	16	57	56	0	5	38	1.22
57786294--57786396	19	5.5	18	70	15	66	66	1	3	28	1.20
57786294--57786394	38	2.7	37	80	4	114	66	1	3	27	1.20
57786210--57786397	9	20.0	9	67	21	57	63	1	2	32	1.18
57786592--57786674	19	4.5	18	70	19	55	26	2	0	71	0.99
57786592--57786647	19	3.0	19	80	12	62	28	1	0	69	0.98
57787112--57787238	25	5.1	25	100	0	254	27	15	11	44	1.82
57788603--57788636	6	5.7	6	96	0	59	20	47	14	17	1.83
57788827--57788862	19	1.9	19	88	5	56	55	8	11	25	1.62
57790759--57790812	23	2.3	23	96	0	99	18	25	3	51	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203