genome.fa.s17.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  13  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4382272--4382391	36	3.3	36	83	0	150	48	22	9	20	1.77
4382272--4382410	36	3.9	36	82	1	145	49	21	8	20	1.75
4382758--4382791	3	11.3	3	87	0	50	0	26	0	73	0.83
4383033--4383087	27	2.0	27	82	0	65	52	14	12	20	1.73
4389080--4389154	37	2.0	37	94	0	132	26	22	17	33	1.96
4389090--4389153	18	3.5	18	67	12	58	25	25	17	32	1.96
4392797--4392909	44	2.6	44	74	14	117	23	18	29	28	1.98
4393685--4393975	47	6.2	46	86	2	339	25	13	19	41	1.88
4393685--4393975	117	2.5	117	91	1	458	25	13	19	41	1.88
4393685--4393984	70	4.3	71	88	1	349	26	13	19	41	1.88
4399632--4399678	24	2.0	24	100	0	94	42	12	4	40	1.63
4403012--4403079	33	2.1	33	97	0	127	33	17	14	33	1.91
4407716--4407758	19	2.3	19	81	14	54	60	0	0	39	0.97
4408085--4408151	11	5.9	11	75	17	66	38	2	1	56	1.24
4408401--4408446	19	2.3	19	85	7	56	47	0	2	50	1.13
4408828--4408859	6	5.3	6	100	0	64	50	0	0	50	1.00
4409522--4409697	80	2.2	81	83	6	221	35	8	16	39	1.79
4409678--4409718	21	2.0	21	85	0	55	43	12	9	34	1.75
4409610--4409796	100	1.9	100	82	5	234	36	9	18	35	1.82
4409779--4409819	22	1.9	22	85	5	57	43	17	14	24	1.86
4409606--4409818	101	2.1	101	80	5	243	36	10	18	34	1.85
4412236--4412267	8	4.0	8	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4412714--4412751	18	2.1	18	85	9	51	42	0	2	55	1.14
4412699--4412743	17	2.7	16	80	12	54	44	2	0	53	1.13
4417697--4417755	29	2.0	29	80	6	66	33	32	10	23	1.88
4423485--4423575	23	4.0	22	73	14	71	63	6	4	25	1.37
4423621--4423659	3	13.0	3	84	10	53	64	0	5	30	1.15
4424608--4424653	19	2.5	19	82	3	58	4	23	54	17	1.61
4424910--4424939	13	2.3	13	94	0	51	10	0	16	73	1.09
4428255--4428401	28	5.2	28	75	8	138	26	17	23	31	1.97
4428255--4428425	56	3.1	56	82	3	186	26	18	23	31	1.97
4430493--4430521	5	5.8	5	100	0	58	17	0	0	82	0.66
4433365--4433399	7	5.1	7	93	6	63	28	0	0	71	0.86
4440752--4440838	40	2.2	40	83	4	104	29	12	22	34	1.92
4444134--4444172	20	1.9	21	89	5	62	0	17	2	79	0.84
4444144--4444172	15	1.9	15	100	0	58	0	13	3	82	0.79
4445604--4445686	28	3.0	28	90	0	121	31	26	22	19	1.98
4445932--4446154	32	7.0	32	79	4	252	36	22	21	19	1.95
4445932--4446154	64	3.5	64	93	0	365	36	22	21	19	1.95
4446169--4446232	27	2.4	27	85	12	80	31	21	25	21	1.98
4446296--4446374	24	3.3	23	82	10	88	45	18	8	26	1.79
4446333--4446429	24	4.0	24	86	0	122	45	23	5	25	1.73
4446501--4446615	27	4.3	26	85	6	144	26	20	18	34	1.96
4446895--4446937	17	2.4	17	80	7	50	20	44	20	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4448774--4448895	23	5.3	23	90	3	192	29	25	21	23	1.99
4448774--4448895	46	2.7	46	96	0	217	29	25	21	23	1.99
4459383--4459431	20	2.5	20	89	0	71	55	8	6	30	1.54
4460958--4461017	30	2.0	30	100	0	120	46	36	3	13	1.60
4464189--4464227	15	2.6	15	84	15	62	28	7	5	58	1.47
4476080--4476777	44	15.7	44	69	15	259	28	18	24	28	1.98
4476056--4476343	143	2.0	143	95	0	513	27	19	26	26	1.99
4476199--4476904	217	3.3	217	95	0	1268	27	18	24	29	1.98
4480820--4480845	4	6.5	4	100	0	52	73	0	0	26	0.84
4481890--4481948	28	2.1	29	87	3	84	27	6	11	54	1.62
4482078--4482125	23	2.1	23	84	7	62	52	0	8	39	1.32
4482853--4482903	10	5.0	10	83	4	66	23	3	0	72	1.01
4482885--4482962	30	2.6	31	76	10	81	38	6	0	55	1.26
4482819--4482960	73	1.9	73	80	5	162	33	7	0	59	1.30
4482886--4482968	21	4.2	20	71	20	66	38	6	1	54	1.33
4483859--4483957	39	2.4	41	80	14	116	53	6	4	36	1.45
4492251--4492293	5	7.8	5	85	14	50	79	4	0	16	0.90
4492251--4492293	12	3.8	11	82	11	52	79	4	0	16	0.90
4492251--4492293	18	2.5	17	88	7	61	79	4	0	16	0.90
4495334--4495371	2	19.0	2	100	0	76	50	50	0	0	1.00
4500761--4501111	47	7.4	47	95	1	603	29	29	7	32	1.86
4508420--4508463	19	2.2	19	84	8	52	18	13	4	63	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4509809--4509852	19	2.2	19	84	8	52	18	13	4	63	1.46
4515622--4515681	17	3.4	18	90	6	97	8	20	1	70	1.22
4519312--4519346	18	1.9	18	88	0	52	31	34	25	8	1.86
4521997--4522034	19	2.0	19	85	10	51	23	39	0	36	1.55
4535104--4535423	157	2.0	157	95	0	577	31	13	26	28	1.94
4541490--4541753	40	6.6	40	87	6	349	25	22	27	24	2.00
4541490--4541786	159	1.9	159	82	6	379	26	22	26	24	2.00
4549971--4550006	18	2.1	17	89	5	54	36	16	8	38	1.79
4551373--4551408	18	2.0	18	100	0	72	50	0	0	50	1.00
4551377--4551420	18	2.4	18	88	3	61	54	0	2	43	1.12
4552332--4553169	419	2.0	419	96	0	1541	31	11	17	40	1.84
4553426--4553472	5	9.4	5	100	0	94	19	0	0	80	0.70
4561137--4561324	51	3.7	50	83	3	225	30	27	15	26	1.96
4562402--4562478	38	2.0	39	92	2	129	37	25	5	31	1.78
4562561--4562735	88	2.0	88	94	0	305	40	16	9	33	1.81
4566008--4566054	24	1.9	25	83	12	62	31	8	19	40	1.81
4566833--4566862	14	2.1	14	93	0	51	16	43	0	40	1.48
4567823--4567847	5	5.0	5	100	0	50	20	0	0	80	0.72
4575719--4575874	41	3.8	41	83	5	118	37	14	25	22	1.92
4575649--4575877	82	2.8	82	81	1	235	35	14	27	21	1.93
4590793--4590847	29	2.0	29	86	13	80	16	14	9	60	1.59
4591754--4591908	39	3.9	39	88	5	197	48	9	10	31	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4597084--4597234	42	3.6	42	93	1	241	24	38	18	18	1.93
4597127--4597237	21	5.3	21	63	16	59	25	40	17	17	1.90
4597169--4597238	21	3.3	21	70	7	70	25	41	15	17	1.89
4597084--4597255	42	4.1	42	91	3	238	24	37	17	20	1.93
4607767--4608162	194	2.0	193	96	0	729	46	15	12	24	1.81
4610556--4610587	15	2.1	15	94	0	55	34	21	15	28	1.94
4611581--4611627	22	2.1	22	88	7	69	19	19	46	14	1.84
4616520--4616596	31	2.5	31	81	10	88	28	10	15	45	1.79
4616958--4617031	31	2.4	31	84	2	87	25	18	16	39	1.91
4618234--4618309	31	2.5	31	91	0	125	44	11	15	27	1.82
4619193--4619237	11	3.9	12	77	16	51	24	31	2	42	1.67
4619193--4619245	22	2.4	21	81	15	54	26	28	3	41	1.73
4619256--4619280	11	2.3	11	100	0	50	16	28	8	48	1.74
4619205--4619304	51	2.0	50	86	7	139	26	25	4	45	1.71
4619260--4619296	11	3.2	12	88	7	51	27	18	5	48	1.70
4619322--4619350	12	2.3	13	94	5	51	37	0	0	62	0.96
4620449--4620474	7	3.7	7	100	0	52	26	0	15	57	1.38
4621125--4621164	18	2.2	18	86	0	53	17	30	7	45	1.76
4621547--4621825	21	13.0	22	83	3	331	44	30	0	24	1.57
4621547--4621825	43	6.5	42	82	3	326	44	30	0	24	1.57
4621825--4622084	114	2.3	114	97	0	484	41	9	7	42	1.65
4621919--4622087	37	4.5	37	64	16	105	42	8	6	43	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4625094--4625519	124	3.4	125	87	2	579	29	24	16	29	1.97
4629547--4629572	5	5.2	5	100	0	52	38	19	19	23	1.93
4629950--4630009	30	2.0	31	86	3	86	40	0	40	20	1.52
4630302--4630343	9	4.7	9	90	0	66	35	21	11	30	1.90
4631409--4631501	42	2.2	42	82	3	107	23	25	33	17	1.96
4638347--4638430	21	4.0	21	84	1	98	15	22	19	42	1.88
4638347--4638430	42	2.0	41	86	2	114	15	22	19	42	1.88
4647228--4647258	16	1.9	16	93	0	53	41	9	12	35	1.76
4655801--4655893	48	1.9	48	100	0	186	25	9	17	47	1.78
4656049--4656082	15	2.3	15	90	10	52	73	0	2	23	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203