genome.fa.s17.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  172  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54624342--54624457	53	2.2	53	82	0	142	18	31	22	27	1.97
54625669--54625719	23	2.2	23	89	0	75	43	21	7	27	1.80
54635833--54636302	235	2.0	235	100	0	940	38	19	8	33	1.83
54646037--54646080	23	1.9	23	90	0	70	27	4	25	43	1.74
54651136--54651244	26	4.2	26	83	0	101	36	23	20	19	1.95
54651407--54651521	27	4.3	27	83	4	142	20	16	21	40	1.91
54651408--54651521	54	2.1	54	87	6	160	21	16	21	41	1.90
54651598--54651639	22	2.0	21	86	9	59	28	40	21	9	1.84
54652573--54652928	182	2.0	183	95	0	642	32	35	4	27	1.76
54663486--54663510	5	5.0	5	100	0	50	80	0	0	20	0.72
54666864--54666911	21	2.4	21	80	10	57	29	10	2	58	1.43
54681404--54681749	51	6.8	51	79	4	324	30	15	26	28	1.96
54681410--54681753	102	3.4	101	86	2	442	29	15	25	29	1.96
54682541--54682648	54	2.0	54	100	0	216	27	25	24	22	2.00
54693850--54694912	47	22.4	47	97	1	1874	32	9	29	28	1.89
54695031--54695109	37	2.1	37	90	0	122	24	18	31	25	1.98
54702458--54702545	4	20.5	4	72	23	56	20	3	3	72	1.13
54702458--54702518	13	4.8	12	77	15	52	21	3	0	75	0.94
54702458--54702542	18	4.8	17	77	12	75	20	3	3	72	1.14
54702462--54702542	23	3.5	22	80	14	74	19	3	3	72	1.15
54702458--54702545	13	6.8	13	71	21	51	20	3	3	72	1.13
54702658--54702682	8	3.1	8	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54702771--54702855	36	2.4	36	89	0	134	24	10	9	55	1.63
54704468--54704509	19	2.2	20	79	12	52	21	0	4	73	1.01
54704466--54704532	32	2.1	32	83	5	82	14	0	7	77	0.97
54704452--54704532	25	3.1	24	80	18	83	13	1	7	77	1.03
54706958--54707065	36	3.0	36	90	2	182	32	12	12	41	1.82
54710044--54710128	42	2.0	42	100	0	170	32	16	14	36	1.89
54718217--54718337	46	2.6	46	84	3	136	34	4	22	38	1.76
54718217--54718426	23	9.1	23	71	7	122	31	4	22	40	1.75
54718261--54718343	24	3.5	24	78	4	73	36	4	20	38	1.74
54719033--54719072	16	2.5	16	95	0	71	30	27	7	35	1.84
54721101--54721160	18	3.1	19	71	15	59	38	3	0	58	1.15
54721103--54721163	20	3.0	20	70	15	63	36	3	0	60	1.13
54722099--54722137	20	2.0	20	94	0	69	43	15	12	28	1.83
54723591--54723638	18	2.7	18	80	0	51	29	10	12	47	1.74
54723861--54723891	14	2.2	14	94	0	53	35	6	16	41	1.74
54723883--54723920	19	2.0	19	100	0	76	26	10	15	47	1.78
54725384--54725608	43	5.3	43	80	2	213	25	23	19	31	1.98
54725426--54725608	86	2.1	86	84	2	242	24	24	18	32	1.97
54730492--54730703	16	13.0	16	76	15	156	32	1	18	47	1.58
54730492--54730707	50	4.2	50	85	8	267	32	1	18	47	1.58
54730686--54731342	96	6.8	96	100	0	1314	26	1	17	54	1.50
54731420--54731458	19	2.0	20	95	5	62	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54734246--54734318	15	5.0	15	74	12	62	34	46	0	19	1.50
54734246--54734279	8	4.6	7	86	13	50	32	50	0	17	1.47
54734581--54734659	41	1.9	41	92	0	131	30	35	15	18	1.92
54734670--54735318	114	5.7	114	94	1	1043	25	25	21	27	1.99
54735232--54735391	72	2.2	73	87	3	225	28	24	18	28	1.98
54735105--54735569	186	2.5	186	87	1	657	26	24	21	27	1.99
54735297--54735504	113	1.8	114	87	1	310	28	24	18	28	1.98
54735407--54735569	72	2.3	72	86	4	213	25	23	23	27	2.00
54737329--54737370	4	10.8	4	94	5	77	0	21	26	52	1.47
54737830--54737868	16	2.3	18	86	8	55	20	10	20	48	1.78
54740047--54740098	26	2.0	26	88	0	77	26	11	9	51	1.68
54748540--54748566	14	1.9	14	100	0	54	51	7	0	40	1.30
54756642--54756668	8	3.4	8	100	0	54	51	11	0	37	1.37
54761601--54761677	13	5.9	13	79	0	73	29	20	27	22	1.98
54776233--54776303	31	2.3	31	85	0	88	66	5	0	28	1.14
54782542--54782605	17	3.6	17	74	15	67	26	12	14	46	1.79
54782534--54782604	36	2.0	36	97	0	133	25	12	15	46	1.81
54782533--54782589	19	3.1	19	71	19	66	26	12	15	45	1.82
54782809--54782904	48	2.0	48	84	8	124	19	14	23	41	1.89
54783897--54783925	6	5.0	6	91	8	51	17	82	0	0	0.66
54783900--54783928	11	2.6	11	100	0	58	17	82	0	0	0.66
54787193--54787232	20	2.0	20	85	0	53	37	2	2	57	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54787499--54787549	25	2.0	25	100	0	102	33	15	15	35	1.90
54787503--54787558	25	2.2	25	87	6	78	33	12	16	37	1.86
54792675--54792896	40	5.6	40	82	8	249	24	20	28	26	1.99
54792672--54792896	80	2.8	80	82	7	280	24	20	28	27	1.99
54813222--54813268	11	4.3	11	76	7	51	63	2	27	6	1.30
54813221--54813254	11	2.9	12	82	8	52	64	2	26	5	1.30
54814884--54814909	9	2.9	9	100	0	52	30	0	23	46	1.53
54817649--54817820	40	4.3	39	79	7	202	16	21	21	40	1.92
54817684--54817787	20	5.2	20	69	7	77	17	22	21	39	1.92
54817649--54817820	80	2.2	80	86	2	229	16	21	21	40	1.92
54825389--54825497	56	1.9	56	98	0	209	23	16	20	39	1.92
54826445--54826510	29	2.2	29	83	2	78	36	7	15	40	1.75
54833752--54833803	25	2.1	25	100	0	104	32	19	3	44	1.69
54836699--54836751	20	2.7	20	88	2	72	32	13	13	41	1.82
54869710--54869736	11	2.5	11	100	0	54	29	0	0	70	0.88
54876121--54876287	66	2.6	65	80	5	176	40	15	19	25	1.90
54876190--54876544	130	2.8	125	76	6	311	40	14	20	24	1.90
54879372--54879414	24	1.9	22	86	13	61	55	0	2	41	1.12
54879343--54879456	62	1.9	59	87	5	165	51	3	4	40	1.39
54879450--54879498	25	1.9	26	84	12	66	51	8	4	36	1.51
54881310--54881339	8	3.8	8	100	0	60	76	13	0	10	1.01
54886108--54886951	3	281.3	3	100	0	1688	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54894642--54894982	62	5.5	62	97	0	628	42	15	19	21	1.88
54902274--54903404	47	24.1	47	95	0	1976	33	8	29	29	1.86
54903523--54903601	37	2.1	37	88	0	113	25	18	30	25	1.98
54911523--54911590	29	2.3	29	85	5	93	27	30	13	27	1.94
54911412--54911739	174	1.9	174	95	0	593	30	24	14	30	1.95
54911697--54911770	29	2.6	29	83	16	100	28	28	14	28	1.96
54915386--54915764	47	8.1	47	93	0	598	32	8	29	28	1.88
54915883--54915961	37	2.1	37	88	0	113	25	18	30	25	1.98
54930203--54930265	32	2.0	32	100	0	126	39	0	9	50	1.35
54932603--54932638	16	2.2	16	95	0	63	38	2	5	52	1.39
54932648--54932678	16	1.9	16	93	0	53	38	0	0	61	0.96
54932814--54933180	82	4.4	84	77	7	302	27	13	13	45	1.81
54932816--54933113	164	1.8	165	83	5	406	27	13	12	46	1.79
54933018--54933196	89	2.0	89	81	6	211	27	10	14	47	1.77
54938199--54938245	22	2.0	24	88	8	71	42	2	6	48	1.40
54938220--54938255	16	2.2	16	90	0	54	41	2	2	52	1.30
54938250--54938293	6	7.7	6	92	7	74	34	0	0	65	0.93
54939706--54939769	9	7.0	9	74	15	51	60	3	1	34	1.22
54939697--54939747	20	2.5	20	80	0	66	66	3	1	27	1.20
54939735--54939769	8	4.1	8	86	13	52	57	0	0	42	0.99
54939728--54939771	18	2.5	17	92	3	70	56	2	0	40	1.11
54943791--54943841	21	2.5	21	83	3	68	39	7	15	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54948701--54948737	18	2.1	18	89	0	56	72	13	2	10	1.21
54953120--54953161	17	2.6	16	81	7	57	26	2	21	50	1.61
54953131--54953168	18	2.2	18	95	4	69	23	5	21	50	1.69
54954389--54954573	46	4.0	46	92	1	291	34	9	28	28	1.89
54956599--54956707	29	3.8	29	75	2	94	40	16	22	21	1.91
54956893--54956978	26	3.3	26	85	0	82	40	17	13	27	1.88
54956880--54956983	52	2.0	52	84	0	136	39	18	17	25	1.92
54960077--54960170	26	3.6	26	86	0	125	25	14	17	42	1.87
54966504--54966538	18	1.9	18	94	0	61	48	11	11	28	1.74
54971266--54971332	34	1.9	35	90	3	109	32	8	13	44	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203