genome.fa.s17.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  133  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42287102--42287128	4	6.8	4	100	0	54	22	0	0	77	0.76
42288296--42288325	15	2.1	14	93	6	51	20	20	23	33	1.95
42289827--42290058	56	4.1	56	98	0	446	45	9	21	22	1.81
42291124--42291348	40	5.7	40	84	5	278	25	21	27	25	2.00
42293569--42293786	40	5.5	39	87	3	233	25	20	27	26	1.99
42293522--42293784	120	2.2	120	82	4	309	25	21	27	25	1.99
42293523--42293819	80	3.7	80	81	6	230	26	21	27	24	1.99
42304002--42304075	29	2.6	29	86	4	96	24	16	33	25	1.95
42310180--42310231	24	2.2	24	96	0	95	36	15	11	36	1.84
42314114--42314164	25	2.0	25	82	14	61	45	0	0	54	0.99
42323530--42323579	26	1.9	26	84	15	68	32	16	18	34	1.92
42331243--42331384	6	22.8	6	73	17	94	50	14	16	19	1.79
42331242--42331384	31	4.6	31	91	0	205	49	13	16	20	1.79
42331277--42331349	25	2.9	25	78	15	71	50	15	13	20	1.77
42331521--42331622	27	3.8	26	88	5	132	36	21	23	18	1.95
42332272--42332690	27	15.6	27	88	1	590	25	21	19	33	1.96
42332691--42332757	27	2.5	27	100	0	134	28	11	20	38	1.88
42332708--42332881	27	6.4	27	80	2	107	32	7	23	36	1.83
42332777--42332892	54	2.1	54	84	3	144	37	6	22	34	1.79
42332807--42332894	27	3.3	27	91	0	140	37	6	22	32	1.81
42332906--42333097	27	7.1	27	83	5	210	32	8	20	39	1.82
42333094--42333191	27	3.6	27	90	0	151	32	6	21	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42335784--42335838	28	2.0	27	86	10	76	27	18	25	29	1.98
42339377--42339520	43	3.4	42	79	7	155	28	15	23	32	1.95
42344432--42344560	29	4.5	29	89	2	172	33	25	12	28	1.92
42349737--42349820	43	2.0	43	92	4	143	22	26	23	27	2.00
42361170--42361265	21	4.5	21	89	2	129	36	27	22	13	1.92
42361170--42361275	42	2.5	43	84	3	142	35	26	22	15	1.93
42361649--42361706	15	3.8	15	88	2	89	51	12	0	36	1.39
42361652--42361710	30	2.0	28	93	6	100	55	11	0	32	1.36
42364828--42364860	17	1.9	17	100	0	66	18	36	36	9	1.82
42367791--42367861	35	2.0	35	89	5	108	35	23	16	23	1.95
42372388--42372492	40	2.7	40	86	4	151	25	28	22	22	1.99
42380497--42380678	40	4.6	40	82	6	210	24	29	21	24	1.99
42380499--42380678	79	2.3	80	82	5	213	23	28	22	25	1.99
42382604--42382719	29	4.0	29	79	8	121	27	30	14	27	1.95
42382595--42382706	58	1.9	58	85	7	156	26	31	15	26	1.96
42386170--42386347	27	6.6	27	81	5	171	28	28	16	26	1.97
42386191--42386346	82	1.9	81	85	3	215	28	28	16	26	1.97
42388655--42388723	35	2.0	35	97	0	129	20	24	10	44	1.82
42393652--42393787	68	2.0	68	97	0	254	30	25	14	28	1.95
42394397--42394574	27	6.6	27	81	3	169	30	28	15	26	1.96
42404970--42405003	12	2.8	12	81	0	50	29	5	2	61	1.34
42405021--42405076	24	2.5	22	78	13	69	35	3	5	55	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42405090--42405128	18	2.2	18	95	0	69	38	5	2	53	1.37
42414302--42415289	492	2.0	492	97	0	1886	32	16	22	28	1.96
42418449--42418809	45	8.0	45	77	7	340	28	17	26	27	1.97
42418449--42418769	91	3.6	90	85	5	409	29	16	26	27	1.97
42420554--42420728	89	2.0	88	87	3	253	30	14	23	30	1.95
42420578--42420728	44	3.4	44	73	14	130	32	14	23	29	1.94
42420957--42421107	44	3.4	44	72	14	139	31	13	24	29	1.94
42420910--42421078	44	3.8	44	73	4	169	31	13	24	31	1.93
42420913--42421107	89	2.2	88	88	2	284	31	12	24	30	1.93
42420554--42421288	379	1.9	379	98	0	1407	31	17	24	26	1.97
42423542--42423866	40	7.7	40	68	12	195	27	19	21	31	1.98
42423542--42423863	85	3.8	85	96	0	572	27	19	21	31	1.98
42425288--42425338	3	17.0	3	76	8	50	29	1	3	64	1.22
42425356--42425414	23	2.5	24	77	2	75	33	3	5	57	1.37
42425389--42425445	30	1.9	30	92	0	96	35	3	5	56	1.39
42425427--42425465	18	2.2	18	95	0	69	38	5	2	53	1.37
42427990--42428148	41	3.7	42	77	11	121	28	27	18	25	1.98
42429042--42429100	28	2.0	31	83	9	79	50	5	0	44	1.24
42430166--42430227	30	2.1	30	81	6	72	48	1	3	46	1.28
42431360--42431582	51	4.4	52	72	10	138	26	14	27	31	1.95
42439777--42439861	20	4.2	19	75	14	64	51	4	3	40	1.40
42439804--42439852	19	2.6	19	84	9	57	53	4	2	40	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42439843--42439884	20	2.2	20	91	4	68	59	0	0	40	0.97
42439852--42439904	21	2.6	20	84	3	61	64	0	1	33	1.05
42440186--42440225	21	1.9	21	94	0	71	55	15	12	17	1.70
42443355--42443397	18	2.3	19	88	11	63	13	16	0	69	1.19
42447351--42447384	3	10.7	3	87	12	50	0	29	0	70	0.87
42447351--42447388	13	2.9	13	100	0	76	0	28	0	71	0.87
42447351--42447384	10	3.6	9	88	11	50	0	29	0	70	0.87
42454721--42454767	23	2.0	24	88	12	71	44	4	0	51	1.21
42454767--42454819	26	2.0	26	82	13	65	47	3	1	47	1.31
42462208--42462245	20	1.9	20	94	0	67	36	10	28	23	1.88
42468215--42468243	6	4.8	6	100	0	58	0	13	0	86	0.58
42470408--42470446	20	2.0	20	84	0	51	48	0	2	48	1.15
42470543--42470582	20	2.0	20	100	0	80	40	15	10	35	1.80
42470532--42470595	34	1.9	33	87	9	94	39	15	9	35	1.80
42470565--42470602	14	2.7	14	91	0	58	36	18	7	36	1.80
42472585--42472677	44	2.1	44	97	0	177	41	6	8	43	1.61
42473354--42473430	29	2.4	32	81	14	97	54	7	2	35	1.43
42474905--42474938	17	2.0	17	88	0	50	61	2	2	32	1.26
42477084--42477123	18	2.2	18	90	0	62	17	27	32	22	1.96
42499428--42499476	25	1.9	26	83	4	64	34	24	14	26	1.94
42499727--42500106	189	2.0	190	96	0	708	30	19	9	40	1.84
42502350--42502455	43	2.5	43	84	6	160	44	19	16	19	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42504339--42504377	20	2.0	20	85	5	53	64	0	5	30	1.15
42513049--42513115	6	11.2	6	78	10	50	76	0	0	23	0.79
42513049--42513087	15	2.6	15	100	0	78	79	0	0	20	0.73
42522251--42522367	50	2.4	50	81	4	130	25	25	17	31	1.97
42522289--42522484	50	3.8	50	76	4	167	23	28	19	28	1.98
42526762--42526792	16	1.9	16	93	0	53	29	0	45	25	1.54
42531654--42531704	20	2.8	18	76	23	61	49	3	1	45	1.32
42538147--42539317	585	2.0	581	97	0	2198	35	19	5	39	1.76
42541240--42541270	16	1.9	16	100	0	62	64	6	3	25	1.33
42542732--42543753	44	23.6	43	70	14	325	27	24	20	28	1.99
42542822--42543753	217	4.3	217	92	0	1494	27	24	20	28	1.99
42543554--42543663	43	2.5	43	81	5	123	30	22	20	26	1.98
42551795--42551840	24	1.9	24	86	8	67	10	23	17	47	1.79
42556065--42556098	16	2.1	16	100	0	68	67	5	0	26	1.13
42559211--42559250	19	2.0	20	90	4	64	65	12	7	15	1.47
42567131--42567156	5	5.2	5	100	0	52	80	0	0	19	0.71
42572859--42572954	40	2.4	40	85	3	122	38	19	20	20	1.94
42572992--42573307	122	2.6	124	88	2	458	23	21	25	29	1.99
42572992--42573300	41	7.5	41	85	1	422	23	20	25	29	1.99
42573709--42573741	14	2.3	15	94	5	59	30	0	33	36	1.58
42573908--42573933	7	3.7	7	100	0	52	26	0	30	42	1.56
42576535--42576593	18	3.3	18	63	13	50	42	6	10	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42576801--42577098	43	6.9	43	84	1	373	19	16	31	32	1.94
42576801--42577098	86	3.5	86	88	1	418	19	16	31	32	1.94
42577598--42577622	12	2.1	12	100	0	50	36	0	24	40	1.55
42582282--42582320	19	2.0	20	90	5	62	17	0	12	69	1.19
42584105--42584150	21	2.2	21	88	0	65	28	17	32	21	1.96
42584337--42584383	19	2.4	19	85	3	58	31	10	4	53	1.55
42588208--42588426	34	7.2	33	60	27	99	36	8	17	36	1.80
42588242--42588392	26	5.2	26	64	27	72	36	8	19	35	1.82
42588200--42588441	60	4.0	60	99	0	475	36	7	18	37	1.80
42590701--42590729	14	2.1	14	100	0	58	27	6	20	44	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203