genome.fa.s17.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  94  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29647933--29647963	16	1.9	16	93	0	53	32	22	0	45	1.53
29648009--29648147	16	9.0	16	65	19	71	47	20	2	29	1.64
29647983--29648147	41	4.0	41	79	3	154	48	20	3	28	1.64
29648024--29648079	25	2.2	25	90	0	85	44	21	3	30	1.69
29648068--29648159	25	3.7	25	80	2	87	46	18	2	32	1.61
29650864--29651133	43	6.3	42	87	3	362	19	17	32	30	1.95
29654207--29654265	3	19.7	3	100	0	118	67	0	32	0	0.91
29656546--29656576	14	2.2	14	100	0	62	29	29	12	29	1.94
29657840--29657896	6	9.5	6	75	7	53	75	8	1	14	1.11
29666541--29666619	21	3.6	21	72	11	68	21	7	8	62	1.50
29674700--29674738	20	2.0	20	85	10	53	43	12	7	35	1.72
29678013--29678053	19	2.2	19	91	8	66	12	9	0	78	0.98
29678032--29678097	27	2.3	29	82	12	82	13	6	6	74	1.20
29686019--29686084	27	2.4	27	89	0	105	34	18	10	36	1.85
29686365--29686428	34	1.9	32	93	6	110	32	23	21	21	1.98
29693493--29693669	27	6.6	27	93	3	254	31	19	15	33	1.93
29695900--29695952	24	2.1	26	86	10	74	52	5	0	41	1.25
29697357--29698062	353	2.0	353	99	0	1394	31	19	21	27	1.98
29700992--29701089	9	10.2	9	72	14	63	32	0	0	67	0.91
29700995--29701079	30	2.9	29	84	8	109	34	0	0	65	0.93
29701016--29701121	40	2.6	40	90	1	167	36	0	0	62	1.02
29701046--29701112	11	6.4	11	77	18	54	37	1	0	61	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29701531--29701629	48	2.0	49	88	5	148	30	14	18	37	1.90
29704147--29704227	27	3.0	27	74	13	76	28	23	7	40	1.81
29704186--29704264	27	3.0	26	73	12	79	22	22	10	44	1.83
29705011--29705040	15	1.9	16	93	6	53	56	3	0	40	1.16
29705697--29705769	30	2.4	30	74	0	74	34	6	15	43	1.73
29709342--29709382	20	2.0	20	90	0	64	34	19	14	31	1.92
29712215--29712308	34	2.8	34	87	6	131	39	0	17	43	1.49
29712402--29712794	126	3.1	126	86	1	504	36	16	16	30	1.92
29716312--29716361	18	2.8	18	96	0	91	48	6	22	24	1.73
29719485--29719523	20	1.9	21	84	5	53	66	2	2	28	1.18
29719455--29719529	30	2.4	31	74	12	73	65	2	2	29	1.20
29721066--29721137	27	2.7	26	77	14	67	56	1	5	36	1.31
29722019--29722043	7	3.6	7	100	0	50	88	0	12	0	0.53
29723168--29723203	16	2.2	16	90	0	54	58	0	2	38	1.13
29723731--29723773	20	2.0	22	86	13	63	58	4	0	37	1.19
29729114--29729194	38	2.1	38	83	0	99	44	23	14	17	1.86
29728848--29729681	339	2.4	339	89	3	1284	43	15	12	28	1.83
29731033--29731210	27	6.6	27	84	3	205	29	28	15	26	1.96
29731054--29731209	82	1.9	81	88	3	233	29	28	15	26	1.96
29741793--29741886	38	2.4	38	80	1	107	43	25	12	18	1.85
29749436--29749499	32	2.0	32	100	0	128	25	15	15	43	1.86
29753447--29753506	28	2.1	28	81	6	68	18	20	38	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29757061--29757125	14	4.4	14	84	9	85	66	0	10	23	1.23
29757069--29757126	8	7.8	8	79	14	70	68	0	8	22	1.16
29757061--29757126	22	3.0	22	81	16	82	66	0	10	22	1.22
29757069--29757128	30	2.0	30	96	0	111	68	0	8	23	1.16
29765466--29765517	21	2.4	21	78	15	61	59	1	5	32	1.32
29785063--29785256	103	1.9	101	84	6	257	30	17	24	27	1.97
29787325--29787398	21	3.5	22	85	10	100	35	27	22	14	1.94
29787831--29787859	3	9.7	3	100	0	58	65	0	0	34	0.93
29787994--29788035	11	3.5	11	82	17	57	54	2	0	42	1.13
29787993--29788028	14	2.6	14	90	0	63	55	2	0	41	1.14
29792649--29792713	21	3.1	21	88	2	96	33	26	24	15	1.95
29793898--29793935	3	12.7	3	94	0	67	63	2	0	34	1.09
29794070--29794111	11	3.5	11	82	17	57	54	2	0	42	1.13
29794069--29794104	14	2.6	14	90	0	63	55	2	0	41	1.14
29796052--29796154	30	3.5	30	83	1	118	36	20	2	39	1.68
29796488--29796528	20	2.0	21	85	9	57	70	0	26	2	0.99
29796517--29796560	23	2.0	21	86	8	61	70	0	29	0	0.88
29796511--29796563	19	2.8	19	80	5	63	69	0	30	0	0.88
29796646--29796685	21	2.0	19	90	9	62	70	0	30	0	0.88
29796647--29796687	18	2.5	17	85	14	59	73	0	26	0	0.84
29796650--29796754	46	2.3	45	79	12	110	74	0	22	2	0.95
29796694--29796748	9	5.6	10	73	18	53	76	0	21	1	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29796695--29796748	27	2.0	27	85	7	74	77	0	20	1	0.86
29796707--29796748	13	3.2	13	83	6	57	80	0	19	0	0.70
29796647--29796730	18	4.5	17	71	21	53	72	0	25	2	0.96
29797309--29797356	24	2.0	25	84	12	64	25	0	4	70	1.04
29806980--29807111	50	2.6	50	76	7	133	30	22	28	18	1.98
29807044--29807174	49	2.6	50	83	3	149	29	21	25	23	1.99
29807296--29807333	20	1.9	20	88	0	58	52	2	23	21	1.59
29814240--29814426	50	3.8	49	80	4	207	28	21	27	21	1.99
29814636--29814686	20	2.5	20	75	12	59	56	5	23	13	1.59
29815837--29817091	76	16.4	76	83	4	1284	27	17	20	34	1.96
29815829--29817046	152	8.0	152	83	3	1432	27	17	20	33	1.96
29815836--29817052	227	5.3	226	87	4	1502	27	17	20	33	1.96
29824099--29824152	16	3.4	16	82	2	74	85	7	1	5	0.81
29824099--29824152	24	2.3	23	90	3	81	85	7	1	5	0.81
29824099--29824152	8	6.9	8	82	4	65	85	7	1	5	0.81
29824843--29825021	93	1.9	96	87	4	265	28	15	7	48	1.72
29825495--29825552	24	2.4	24	91	0	89	36	10	22	31	1.88
29825790--29826716	85	10.8	84	70	10	518	32	22	19	25	1.97
29825654--29826726	44	25.0	43	70	10	503	32	22	19	25	1.97
29825655--29826726	129	8.3	129	89	0	1588	32	22	19	25	1.97
29828753--29828829	41	1.9	41	84	5	104	37	7	1	53	1.38
29832401--29832470	28	2.5	28	100	0	140	22	24	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29833675--29833734	27	2.2	27	78	0	66	78	0	3	18	0.89
29838875--29838904	5	6.0	5	92	0	51	36	0	3	60	1.14
29841956--29841980	7	3.6	7	100	0	50	32	0	0	68	0.90
29848207--29848266	23	2.5	24	78	13	70	21	16	40	21	1.92
29849791--29849828	14	2.8	14	84	4	51	55	0	0	44	0.99
29852794--29852824	15	2.0	16	93	6	55	12	0	16	70	1.16
29853191--29853502	44	6.9	43	71	15	143	27	20	18	32	1.97
29853149--29853459	142	2.2	142	94	0	543	27	20	19	32	1.97
29853236--29853634	186	2.1	186	90	0	611	27	19	19	33	1.96
29853373--29853503	44	3.0	44	88	0	190	26	21	19	32	1.97
29855564--29855640	31	2.5	30	87	2	100	9	9	11	70	1.35
29855618--29855654	6	5.7	7	90	9	53	10	0	13	75	1.04
29862990--29863616	50	12.5	49	63	9	190	24	25	21	28	1.99
29863001--29863597	303	2.0	303	88	0	890	24	25	22	27	2.00
29862949--29863610	100	6.6	100	87	2	869	24	25	21	28	1.99
29864994--29865038	14	3.1	15	84	12	58	13	20	0	66	1.24
29868537--29868584	21	2.2	23	78	14	57	8	20	6	64	1.43
29869059--29869105	22	2.1	22	100	0	94	14	36	17	31	1.90
29869062--29869110	22	2.3	21	93	6	82	12	36	16	34	1.86
29871453--29871507	22	2.6	21	88	2	74	52	3	5	38	1.42
29871822--29871882	3	21.0	3	73	6	54	59	8	0	32	1.27
29876229--29876275	18	2.6	17	87	12	67	74	4	14	6	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29876860--29876890	15	2.0	16	93	6	55	70	16	0	12	1.16
29878680--29878724	21	2.1	22	83	4	56	26	4	4	64	1.32
29888205--29888229	8	3.1	8	100	0	50	12	52	12	24	1.72
29899054--29899088	9	3.8	9	92	3	52	91	0	8	0	0.42
29899052--29899080	12	2.4	12	100	0	58	93	0	6	0	0.36
29901307--29901337	15	2.1	15	100	0	62	25	0	32	41	1.56
29902060--29902527	106	4.4	106	86	2	652	33	15	17	33	1.91
29912857--29912884	5	5.6	5	100	0	56	82	0	17	0	0.68
29913036--29913075	17	2.4	17	86	0	53	22	12	2	62	1.42
29914697--29914774	28	2.4	35	68	31	91	23	10	32	34	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203