genome.fa.s17.2.7.7.80.10.50.1000.201.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  201  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64293275--64294172	176	5.1	176	99	0	1769	48	4	5	41	1.48
64293590--64293636	21	2.2	22	77	11	53	48	0	10	40	1.38
64293766--64293812	21	2.2	22	77	11	53	48	0	10	40	1.38
64293942--64293988	21	2.2	22	77	11	53	48	0	10	40	1.38
64294118--64294164	21	2.2	22	77	11	53	48	0	10	40	1.38
64294436--64294485	19	2.6	19	75	9	57	34	8	0	58	1.28
64294535--64294608	29	2.6	28	75	10	69	41	5	0	52	1.24
64294568--64294610	21	2.2	19	84	12	52	37	4	0	58	1.19
64300918--64300970	18	2.9	18	83	5	63	45	13	9	32	1.75
64300982--64301059	18	4.3	18	83	0	102	25	15	10	48	1.76
64300982--64301059	36	2.2	36	90	0	120	25	15	10	48	1.76
64302129--64302157	14	2.1	14	100	0	58	44	6	20	27	1.77
64312624--64312655	5	6.4	5	96	0	55	81	3	15	0	0.82
64313488--64313543	19	3.0	19	89	7	80	55	5	0	39	1.23
64317301--64317396	41	2.4	39	81	11	106	30	21	14	33	1.93
64322412--64322487	27	2.8	27	78	7	75	25	23	14	36	1.93
64325515--64325589	39	1.9	39	91	0	123	36	22	16	25	1.94
64327547--64327580	17	2.1	16	88	5	50	50	17	11	20	1.77
64351793--64351839	21	2.2	21	92	0	85	31	23	12	31	1.92
64358160--64358286	20	6.2	20	73	10	87	12	28	18	40	1.87
64361683--64361751	34	2.0	34	100	0	138	37	5	18	37	1.75
64371176--64371222	10	4.3	11	84	15	53	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64372134--64372159	13	2.0	13	100	0	52	38	0	7	53	1.30
64372518--64372543	13	2.0	13	100	0	52	38	0	7	53	1.30
64375260--64375464	91	2.3	90	78	9	199	32	13	22	31	1.93
64377160--64377362	41	5.0	41	86	2	230	34	28	17	19	1.94
64380155--64380234	27	3.1	27	63	17	71	27	30	11	31	1.91
64390385--64390726	122	2.8	122	98	0	648	33	16	9	40	1.80
64391168--64391215	25	1.9	25	86	0	69	29	18	16	35	1.93
64391220--64391275	25	2.2	25	83	0	67	32	23	19	25	1.98
64400102--64400156	20	2.8	20	94	0	101	21	27	0	50	1.49
64403856--64403907	10	5.1	10	82	11	52	59	9	0	30	1.29
64420267--64421194	50	18.7	50	69	5	535	32	24	19	23	1.97
64420258--64421188	100	9.4	100	87	2	1220	33	23	19	23	1.97
64422571--64422622	3	17.3	3	77	0	50	32	7	1	57	1.38
64422709--64422766	31	1.9	29	86	6	80	44	10	0	44	1.38
64423083--64423117	17	2.1	17	89	5	54	17	2	5	74	1.14
64426016--64426146	50	2.6	50	85	0	181	23	29	20	25	1.99
64433279--64433345	17	4.4	17	70	27	60	37	17	5	38	1.75
64433279--64433372	43	2.2	43	94	0	161	37	18	5	39	1.73
64433596--64433788	50	3.7	50	81	6	208	23	27	21	27	1.99
64449037--64449394	40	8.8	40	94	2	563	25	29	21	23	1.99
64449037--64449394	82	4.4	80	91	3	563	25	29	21	23	1.99
64457516--64457777	39	6.7	40	88	7	337	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64461323--64461426	55	1.9	55	97	0	199	56	4	2	35	1.35
64468676--64468744	29	2.4	29	87	4	95	36	11	26	26	1.90
64468730--64468922	30	6.5	30	76	5	160	39	11	25	22	1.89
64468704--64468868	59	2.8	58	71	13	149	36	12	26	23	1.91
64468753--64468948	89	2.2	90	80	7	213	38	13	25	23	1.91
64489346--64489371	13	2.0	13	100	0	52	23	23	23	30	1.99
64491586--64491997	115	3.6	115	87	1	542	32	19	20	27	1.96
64494194--64494222	14	2.1	14	93	6	51	34	0	10	55	1.34
64495019--64495140	43	2.8	43	79	0	136	30	22	22	24	1.99
64494988--64495145	86	1.8	86	80	2	192	30	21	20	27	1.98
64495068--64495205	43	3.2	43	77	6	111	31	23	21	24	1.98
64497489--64497518	2	15.0	2	100	0	60	50	0	0	50	1.00
64497971--64498045	28	2.6	29	89	2	107	26	13	28	32	1.94
64509310--64509334	5	5.0	5	100	0	50	20	0	0	80	0.72
64516042--64516400	41	8.6	41	75	9	298	37	23	16	23	1.94
64516040--64516400	84	4.3	84	85	2	478	36	23	16	23	1.94
64544630--64544675	24	2.0	22	87	8	65	67	13	2	17	1.33
64571076--64571314	50	4.7	50	87	3	316	26	22	29	22	1.99
64574002--64574370	103	3.6	103	89	2	553	19	20	28	31	1.97
64574284--64574336	27	1.9	28	92	3	90	15	24	32	28	1.95
64574981--64576561	792	2.0	792	99	0	3099	31	13	20	35	1.90
64584591--64584654	26	2.5	26	81	0	74	29	25	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64605125--64605157	17	1.9	17	100	0	66	18	12	12	57	1.64
64612647--64612680	17	2.0	17	94	0	59	20	11	8	58	1.59
64613536--64613560	12	2.1	12	100	0	50	24	16	16	44	1.86
64627795--64627881	27	3.2	27	67	20	81	45	9	3	41	1.53
64627807--64627895	28	3.2	28	67	20	87	47	8	4	39	1.55
64627781--64627898	55	2.1	55	96	1	218	47	8	3	40	1.51
64629739--64629962	79	2.8	80	86	6	287	25	22	27	24	2.00
64629739--64629962	40	5.6	39	88	3	281	25	22	27	24	2.00
64629739--64629995	79	3.3	79	82	7	238	26	22	27	24	2.00
64634490--64634942	226	2.0	226	98	0	872	28	18	23	29	1.98
64646069--64646980	39	23.3	39	98	0	1702	25	20	28	25	1.99
64659374--64659551	27	6.6	27	83	3	205	26	15	28	29	1.96
64659375--64659530	82	1.9	81	88	3	233	26	15	28	29	1.96
64659371--64659551	82	2.2	81	83	2	229	27	15	27	29	1.96
64664747--64664846	42	2.4	42	75	9	105	31	18	14	37	1.90
64668284--64668768	247	2.0	247	87	0	709	40	22	5	31	1.77
64670667--64670749	27	3.1	27	82	0	94	37	14	19	28	1.91
64670728--64670785	27	2.1	27	87	0	80	24	20	25	29	1.99
64672315--64672348	12	2.8	12	81	0	50	14	23	0	61	1.33
64674104--64674244	51	2.8	51	80	7	164	25	17	26	29	1.98
64674104--64674236	50	2.6	50	80	8	153	24	17	27	30	1.97
64679636--64679820	51	3.6	51	77	7	198	25	17	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64682664--64682735	5	14.4	5	100	0	144	59	0	0	40	0.97
64694585--64694624	18	2.2	18	86	8	55	40	2	27	30	1.70
64696065--64696134	20	3.5	20	84	0	95	51	4	22	21	1.65
64700707--64700891	79	2.3	82	84	7	238	25	27	22	24	2.00
64700688--64700891	40	5.1	40	82	8	238	25	27	22	25	2.00
64708682--64708907	40	5.7	40	90	4	314	26	27	21	24	1.99
64715174--64715295	58	2.1	58	96	3	228	49	11	7	31	1.67
64715190--64715308	58	2.1	57	87	3	168	50	15	6	26	1.69
64724812--64724844	15	2.1	17	88	11	52	42	6	0	51	1.26
64726615--64726648	17	2.0	17	100	0	68	41	11	17	29	1.85
64736484--64736511	8	3.5	8	100	0	56	42	0	0	57	0.99
64737357--64737386	3	10.0	3	92	0	51	30	3	0	66	1.07
64737727--64737771	14	3.0	16	84	12	60	68	0	0	31	0.89
64737727--64737771	16	3.0	15	82	17	58	68	0	0	31	0.89
64738440--64738483	18	2.6	17	82	10	54	13	6	2	77	1.07
64739081--64739119	3	12.7	3	89	5	60	30	0	2	66	1.05
64740759--64740809	6	8.5	6	100	0	102	17	66	0	15	1.25
64746494--64746543	25	2.0	25	100	0	100	60	8	12	20	1.57
64747153--64747190	9	4.3	9	90	6	51	60	0	0	39	0.97
64749482--64749511	7	4.4	7	91	8	53	73	0	0	26	0.84
64754275--64754396	28	4.4	28	93	1	183	24	13	29	32	1.93
64759726--64759908	48	3.9	47	82	7	239	30	20	18	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64759682--64759907	92	2.5	90	82	7	269	30	22	17	29	1.97
64759901--64759987	32	2.7	31	80	11	113	45	14	6	32	1.72
64760615--64760655	21	1.9	22	95	5	75	29	19	21	29	1.98
64761602--64761663	20	3.1	20	80	0	79	43	17	29	9	1.81
64763485--64763561	38	2.0	38	94	0	136	35	22	9	33	1.85
64786430--64786486	28	2.1	28	90	3	89	8	33	8	49	1.65
64801707--64802017	77	4.0	77	99	0	613	35	5	21	37	1.76
64807784--64807821	19	2.0	20	94	5	69	42	2	5	50	1.39
64807781--64807830	19	2.4	21	77	16	68	36	2	8	54	1.42
64808175--64808211	17	2.2	17	90	0	56	32	18	5	43	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203