genome.fa.s17.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  46  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15013624--15013659	17	2.1	17	94	0	63	58	0	0	41	0.98
15013803--15013844	23	1.9	23	85	9	61	57	0	0	42	0.99
15018959--15019214	107	2.4	107	80	8	297	28	17	14	40	1.88
15018959--15019451	54	9.2	54	77	3	395	28	17	14	39	1.88
15019889--15019926	17	2.4	16	82	8	51	65	0	13	21	1.26
15020435--15020468	5	6.6	5	86	6	50	38	2	20	38	1.68
15027625--15027688	25	2.6	25	84	0	83	23	29	17	29	1.97
15039408--15039475	31	2.2	31	84	5	84	41	7	16	35	1.76
15040012--15040055	21	2.1	21	82	0	52	31	11	9	47	1.71
15060950--15060998	3	16.3	3	100	0	98	67	0	32	0	0.91
15066750--15066801	19	2.8	17	75	16	50	19	1	1	76	0.97
15067049--15067111	24	2.7	23	90	2	99	26	12	17	42	1.85
15067630--15067694	17	3.7	17	78	19	62	56	3	3	36	1.30
15067633--15067695	26	2.4	26	84	7	74	57	1	3	38	1.24
15067632--15067696	9	7.3	9	77	11	64	55	1	3	40	1.25
15069348--15069449	21	4.9	21	69	10	57	16	22	17	43	1.88
15069316--15069449	42	3.2	42	81	6	146	17	23	17	41	1.90
15072804--15072850	20	2.3	20	78	7	51	48	2	10	38	1.50
15073378--15073517	74	1.9	74	82	5	176	18	24	18	38	1.93
15073388--15073553	49	3.4	48	73	9	113	18	25	19	36	1.94
15073354--15073606	25	10.2	24	71	8	109	20	25	19	35	1.96
15076928--15077066	62	2.2	62	79	6	156	19	32	23	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15077975--15078000	13	2.0	13	100	0	52	53	30	15	0	1.42
15082290--15082549	30	8.7	30	85	6	316	31	7	17	43	1.77
15082319--15082364	24	1.9	24	90	0	74	34	8	10	45	1.70
15091113--15091261	42	3.5	40	77	8	136	30	26	18	24	1.98
15092410--15092438	14	2.0	15	93	6	51	51	20	0	27	1.47
15093123--15093415	30	9.4	30	84	6	316	33	7	16	42	1.75
15093580--15093656	41	1.9	40	86	7	111	28	18	25	27	1.98
15099284--15099424	24	5.7	24	69	15	81	33	19	25	21	1.97
15099470--15099536	25	2.8	24	80	8	73	34	16	23	25	1.95
15103907--15104145	126	1.9	126	96	0	442	39	14	7	37	1.76
15108202--15108273	22	3.1	22	73	11	63	63	13	9	12	1.51
15109338--15109370	3	11.0	3	100	0	66	66	0	33	0	0.92
15111053--15111138	42	2.0	42	93	4	147	41	13	16	27	1.86
15114490--15114737	28	8.9	28	90	2	356	27	22	23	25	2.00
15114727--15114761	12	2.9	12	100	0	70	48	25	8	17	1.75
15114858--15114921	26	2.5	26	89	0	101	37	20	18	23	1.94
15115077--15115279	27	7.6	27	82	8	220	18	16	21	43	1.88
15115077--15115279	53	3.8	53	82	7	216	18	16	21	43	1.88
15115076--15115278	80	2.5	81	83	7	245	18	16	20	43	1.88
15120964--15121020	20	2.6	22	75	13	64	43	0	0	56	0.99
15120977--15121017	20	2.0	22	90	9	68	46	0	0	53	1.00
15120968--15121024	30	2.0	28	89	6	87	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15121243--15121274	16	1.9	17	93	6	57	75	0	25	0	0.81
15122247--15122396	45	3.4	44	81	9	171	20	16	18	44	1.87
15128358--15128414	20	2.6	22	75	13	64	43	0	0	56	0.99
15128371--15128411	20	2.0	22	90	9	68	46	0	0	53	1.00
15128362--15128418	30	2.0	28	89	6	87	45	0	0	54	0.99
15128637--15128668	16	1.9	17	93	6	57	75	0	25	0	0.81
15129648--15129792	45	3.2	45	93	1	247	19	17	20	42	1.89
15138014--15138039	12	2.2	12	100	0	52	15	0	7	76	0.99
15138746--15139030	50	5.6	50	80	2	230	27	21	27	23	1.99
15138794--15139038	100	2.5	99	79	3	269	27	22	27	22	1.99
15139222--15139260	20	2.0	20	90	10	62	56	5	23	15	1.59
15143400--15143513	56	2.0	57	96	1	212	27	11	24	36	1.90
15146211--15146334	50	2.5	50	83	0	158	27	24	28	20	1.99
15146873--15146986	56	2.0	57	96	1	212	27	11	24	36	1.90
15149684--15149807	50	2.5	50	83	0	158	27	24	28	20	1.99
15150069--15150107	20	2.0	20	90	10	62	56	5	23	15	1.59
15160420--15160487	27	2.6	27	85	2	93	29	19	19	32	1.96
15164712--15164960	50	4.8	50	85	4	284	20	29	24	26	1.99
15164711--15164960	100	2.4	104	88	6	357	20	29	24	26	1.99
15165055--15165086	13	2.5	13	94	0	55	56	12	0	31	1.37
15165298--15165355	30	1.9	30	89	0	89	31	24	3	41	1.71
15170464--15171002	282	1.9	282	98	0	1033	25	24	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15172024--15172105	26	3.2	26	63	16	71	17	20	29	32	1.95
15172039--15172118	25	3.2	25	63	16	65	16	25	27	31	1.96
15172010--15172249	51	4.6	52	89	5	310	19	27	25	27	1.99
15172050--15172130	25	3.2	25	63	16	67	18	27	27	27	1.98
15172347--15172378	13	2.5	13	94	0	55	56	12	0	31	1.37
15172590--15172647	30	1.9	30	89	0	89	31	24	3	41	1.71
15173323--15173348	13	2.0	13	100	0	52	46	15	7	30	1.74
15179473--15179515	22	1.9	23	90	4	70	65	4	20	9	1.40
15179473--15179520	22	2.2	22	85	7	62	66	6	18	8	1.39
15180447--15180508	3	19.7	3	77	9	61	25	4	1	67	1.19
15180447--15180515	24	3.0	22	85	8	84	24	4	1	69	1.15
15180658--15180687	15	1.9	16	93	6	53	16	16	6	60	1.56
15182871--15182908	19	2.0	19	100	0	76	15	10	15	57	1.64
15189866--15189950	44	1.9	44	90	0	134	27	24	9	38	1.86
15190077--15190105	14	2.1	14	100	0	58	13	6	20	58	1.58
15191160--15191235	39	1.9	39	86	0	107	32	22	22	22	1.98
15192367--15192403	4	9.2	4	87	0	56	21	0	5	72	1.04
15192483--15192541	3	18.7	3	76	10	55	25	5	1	67	1.20
15207232--15208184	45	21.2	45	79	4	985	30	16	23	29	1.96
15207224--15208163	135	7.0	135	90	1	1350	30	16	23	29	1.96
15216809--15216893	44	1.9	44	90	0	134	27	24	9	38	1.86
15218849--15218878	14	2.1	14	93	0	51	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15218928--15218973	20	2.3	20	85	3	58	50	0	0	50	1.00
15219140--15219178	18	2.1	19	85	4	53	53	0	2	43	1.14
15220168--15220197	15	2.1	14	93	6	51	76	0	0	23	0.78
15221696--15221733	16	2.4	16	100	0	76	18	26	31	23	1.97
15221743--15221849	41	2.6	41	85	2	144	35	20	16	27	1.94
15223578--15223624	22	2.2	22	85	11	62	65	10	14	8	1.45
15224460--15224497	4	9.5	4	94	0	67	23	0	2	73	0.95
15224570--15224627	3	18.7	3	75	7	53	27	5	1	65	1.23
15229298--15229336	18	2.1	19	95	4	71	38	15	17	28	1.91
15231216--15231317	3	33.0	3	75	13	82	33	2	1	61	1.22
15234797--15234856	30	2.0	31	86	3	86	20	40	0	40	1.52
15244895--15244940	20	2.3	20	85	3	58	50	0	0	50	1.00
15245705--15245789	29	3.1	29	87	12	126	42	0	2	55	1.12
15245686--15245789	52	2.0	51	85	14	140	44	0	1	53	1.11
15246122--15246173	25	2.0	26	88	3	79	25	19	1	53	1.55
15248431--15248464	4	8.5	4	93	0	59	23	0	2	73	0.97
15248544--15248595	3	16.7	3	76	7	50	25	5	1	67	1.23
15252693--15252747	15	3.7	15	79	11	60	25	7	1	65	1.28
15254820--15254886	34	1.9	35	84	3	91	46	10	8	34	1.70
15256115--15256141	6	4.5	6	100	0	54	85	0	0	14	0.61
15261065--15261099	18	1.9	18	88	11	54	34	17	5	42	1.73
15262360--15262619	89	2.9	89	98	0	502	45	19	13	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15268227--15268254	14	2.0	14	100	0	56	28	7	0	64	1.20
15271098--15271144	19	2.5	20	76	16	55	44	2	12	40	1.54
15271921--15272042	41	3.0	41	93	4	219	29	18	27	23	1.98
15273422--15273597	50	3.5	50	85	1	167	22	28	21	27	1.99
15273464--15273598	50	2.7	50	92	0	216	20	31	22	26	1.98
15276950--15276980	2	15.5	2	93	0	53	48	48	3	0	1.17
15278970--15279038	36	1.9	36	100	0	138	31	8	27	31	1.87
15279031--15279060	15	2.1	15	93	6	53	0	6	10	83	0.81
15283141--15283192	25	2.0	27	82	14	65	48	5	1	44	1.38
15283385--15283409	13	1.9	13	100	0	50	64	0	4	32	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203