genome.fa.s17.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  202  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64809194--64809443	27	9.3	27	70	17	112	22	15	20	42	1.89
64809208--64809443	54	4.4	54	81	4	244	22	15	20	41	1.90
64809207--64809443	81	2.9	81	81	3	244	22	15	20	41	1.90
64810858--64810906	25	2.0	25	91	0	80	22	48	10	18	1.77
64813513--64813575	33	1.9	33	83	6	83	30	22	25	22	1.99
64814037--64814191	27	5.8	26	80	4	139	21	14	20	43	1.88
64814023--64814191	54	3.1	53	75	8	153	21	15	19	43	1.88
64822619--64822803	79	2.3	81	84	7	236	25	27	22	24	2.00
64822619--64822803	40	4.7	40	83	7	234	25	27	22	24	2.00
64830597--64830781	79	2.3	81	84	7	236	25	27	22	24	2.00
64830597--64830781	40	4.7	40	83	7	234	25	27	22	24	2.00
64834873--64834925	27	2.0	27	92	0	88	30	37	11	20	1.88
64842135--64842525	27	14.5	28	78	9	271	37	20	18	22	1.94
64842208--64842539	54	6.2	54	84	4	300	36	19	20	23	1.95
64842529--64842599	27	2.7	27	91	2	108	25	18	18	38	1.93
64842612--64842658	24	1.9	25	86	4	69	14	6	25	53	1.65
64842611--64842670	24	2.5	24	81	5	68	20	5	23	51	1.66
64842733--64842783	27	1.9	27	88	11	79	17	25	25	31	1.97
64842738--64842795	27	2.1	27	84	12	75	20	24	20	34	1.97
64842841--64842993	32	4.8	32	78	3	130	21	20	20	37	1.95
64843124--64843184	27	2.3	27	82	0	86	21	26	22	29	1.99
64848287--64848373	26	3.0	29	66	19	74	39	4	14	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64848262--64848353	26	3.4	26	68	16	78	42	4	11	41	1.61
64848262--64848373	56	2.0	56	94	0	197	40	4	14	41	1.66
64857739--64858330	296	2.0	296	91	1	972	29	21	13	35	1.92
64863769--64863901	50	2.6	51	83	1	151	31	25	15	27	1.95
64863821--64863953	51	2.6	51	81	8	146	31	27	15	26	1.95
64867955--64867987	17	1.9	17	93	0	57	27	12	3	57	1.49
64871501--64871723	30	7.5	30	74	10	181	21	24	13	40	1.90
64871501--64871723	60	3.8	60	72	8	204	21	24	13	40	1.90
64871649--64871721	29	2.5	28	82	8	101	16	28	15	39	1.89
64871709--64871778	29	2.4	29	85	0	104	24	27	11	37	1.89
64875037--64875626	298	2.0	298	91	2	952	24	26	18	29	1.98
64878238--64878272	18	1.9	18	88	11	54	42	8	14	34	1.76
64882997--64883038	20	2.1	20	90	0	66	28	16	9	45	1.79
64883505--64883563	28	2.1	27	87	3	82	25	25	25	23	2.00
64883678--64883748	26	2.7	26	84	0	79	40	25	19	14	1.89
64883927--64884330	27	15.0	27	85	1	443	19	17	21	41	1.90
64891120--64891343	87	2.6	86	89	1	322	25	24	20	29	1.99
64902599--64902689	11	8.5	11	69	20	52	23	29	1	46	1.59
64903574--64903625	9	5.7	9	81	4	68	73	1	3	21	1.10
64903813--64903885	23	3.1	23	74	5	67	28	10	16	43	1.82
64905726--64906009	157	1.8	157	90	1	462	45	3	3	46	1.38
64905763--64906012	76	3.1	81	63	24	186	46	4	3	45	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64905746--64906067	157	2.0	155	81	5	349	46	4	4	44	1.44
64906888--64906917	13	2.3	13	100	0	60	60	13	6	20	1.55
64911615--64911751	37	3.7	37	80	3	150	17	16	28	37	1.92
64917771--64917956	40	4.7	40	86	5	218	26	26	21	25	1.99
64935327--64935523	27	7.3	26	82	4	205	44	20	15	19	1.86
64935338--64935523	54	3.4	52	83	7	228	44	21	15	18	1.86
64935327--64935535	81	2.6	80	86	3	258	44	22	15	18	1.87
64935698--64935752	26	2.1	26	96	0	101	23	18	20	38	1.93
64939560--64939594	18	1.9	18	94	0	61	42	22	5	28	1.76
64954083--64954227	50	2.8	50	82	8	139	27	19	28	24	1.98
64959238--64959466	43	5.3	43	85	1	271	32	27	17	22	1.96
64961591--64961628	14	2.8	13	84	7	58	47	7	10	34	1.67
64961866--64962076	34	6.1	34	83	1	242	19	22	15	41	1.89
64961865--64962074	69	3.0	68	82	3	260	20	22	15	41	1.89
64961866--64962076	103	2.0	103	92	0	350	19	22	15	41	1.89
64969204--64969241	14	2.8	13	92	7	67	47	5	10	36	1.61
64971709--64971747	20	1.9	21	84	5	53	43	10	15	30	1.80
64973658--64973691	14	2.4	14	90	9	52	29	44	2	23	1.68
64973683--64973763	21	3.8	21	69	16	60	39	33	0	27	1.57
64973710--64973747	14	2.7	15	88	12	62	42	26	0	31	1.56
64973710--64973756	15	3.3	15	85	8	53	40	29	0	29	1.57
64973953--64974009	14	3.9	14	75	11	53	35	45	0	19	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64973955--64974017	21	3.0	20	80	13	56	36	44	0	19	1.51
64974008--64974049	14	2.9	14	86	6	57	35	35	0	28	1.58
64974004--64974050	15	3.3	15	85	8	62	40	31	0	27	1.57
64973546--64974123	294	2.0	285	86	7	808	41	26	2	29	1.69
64974399--64974557	41	3.9	41	79	1	158	32	27	18	21	1.97
64974399--64974557	82	1.9	82	82	2	194	32	27	18	21	1.97
64977467--64977639	50	3.3	50	82	4	175	26	19	29	24	1.98
64981291--64981334	22	2.0	23	90	4	72	54	2	0	43	1.12
64981288--64981334	10	4.6	10	77	12	51	57	2	0	40	1.11
64989469--64989501	6	5.5	6	92	0	57	66	0	18	15	1.25
64994326--64994432	38	2.8	39	82	4	137	24	25	15	34	1.95
64995970--64996275	27	11.3	26	85	5	328	41	18	20	19	1.91
64995970--64996275	81	3.8	81	84	3	377	41	18	20	19	1.91
64996452--64996553	26	3.9	26	87	2	125	17	22	22	37	1.94
64996452--64996553	52	2.0	52	86	3	143	17	22	22	37	1.94
64996660--64996746	30	2.9	30	88	6	115	18	27	25	28	1.98
65002142--65002328	50	3.8	49	78	6	162	30	21	26	21	1.98
65002200--65002328	49	2.6	50	80	6	147	31	23	24	21	1.99
65002539--65002577	20	2.0	20	90	10	62	56	5	23	15	1.59
65018765--65018815	23	2.2	23	89	0	75	27	7	21	43	1.80
65018891--65018979	46	1.9	46	88	0	133	42	23	4	29	1.74
65021136--65021179	16	2.8	15	83	10	52	65	0	9	25	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65021952--65022008	21	2.8	19	70	12	51	14	33	17	35	1.90
65021939--65022159	41	5.4	41	86	0	282	17	28	19	34	1.94
65027594--65027618	5	5.0	5	100	0	50	0	0	20	80	0.72
65028604--65028636	3	11.0	3	100	0	66	66	0	0	33	0.92
65030344--65031096	75	10.0	75	79	1	637	37	13	22	25	1.91
65030365--65031096	225	3.2	223	80	3	793	37	13	22	25	1.91
65035036--65035079	23	1.9	22	82	17	54	36	25	0	38	1.56
65035212--65035409	51	3.9	50	80	6	229	29	27	17	25	1.98
65035221--65035405	101	1.8	101	90	3	300	30	27	18	24	1.98
65041308--65041369	24	2.5	25	89	7	92	16	25	22	35	1.94
65045716--65045742	5	5.4	5	100	0	54	62	0	0	37	0.95
65045857--65045982	50	2.5	50	82	7	150	28	12	20	38	1.89
65045913--65045997	25	3.4	24	84	9	100	30	12	20	36	1.90
65047209--65047283	26	2.9	27	84	4	82	16	20	24	40	1.91
65047237--65047287	26	2.0	26	96	0	93	11	21	27	39	1.88
65051774--65051861	43	2.0	43	91	2	140	27	15	30	26	1.96
65054344--65054458	27	4.3	27	88	0	149	42	21	16	19	1.89
65054640--65054710	26	2.7	26	86	0	97	14	18	23	43	1.86
65057414--65057455	20	2.2	19	83	12	50	61	2	19	16	1.44
65057903--65057932	16	1.9	16	93	6	53	30	0	20	50	1.49
65059197--65059245	18	2.6	18	80	6	53	46	2	4	46	1.33
65059858--65059887	14	2.1	14	93	0	51	16	43	0	40	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65064800--65064835	17	2.1	18	89	5	56	8	33	19	38	1.82
65074108--65074169	11	5.6	11	83	5	72	11	0	51	37	1.38
65075336--65075398	21	3.0	21	73	17	58	77	9	4	7	1.10
65080286--65080332	9	5.0	9	78	17	51	72	0	2	25	0.96
65081144--65081177	4	8.5	4	100	0	68	76	0	0	23	0.79
65082014--65082110	42	2.3	42	90	0	158	37	10	26	25	1.88
65084655--65084740	43	2.0	42	95	2	154	43	15	17	24	1.87
65115086--65115170	25	3.4	25	71	10	77	32	18	25	22	1.97
65117595--65117802	27	7.7	27	85	2	240	40	9	24	25	1.85
65117596--65117806	81	2.6	80	82	3	269	41	9	24	25	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203