genome.fa.s17.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  63  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20233260--20233307	20	2.3	21	89	3	71	27	12	14	45	1.81
20236659--20236758	3	33.0	3	97	2	191	66	1	0	33	0.99
20270363--20270420	22	2.6	22	81	7	64	41	17	5	36	1.72
20270641--20270678	19	2.0	20	94	5	69	28	18	5	47	1.70
20276900--20276935	12	3.0	12	100	0	72	33	16	8	41	1.78
20277424--20277493	24	3.0	23	72	2	59	51	15	7	25	1.69
20287567--20287634	25	2.6	26	82	15	95	51	4	0	44	1.21
20287567--20287632	24	2.6	24	86	11	87	50	4	0	45	1.22
20291225--20291408	40	4.6	40	76	10	180	25	26	22	26	2.00
20291225--20291356	40	3.3	40	87	7	189	25	27	21	25	2.00
20293961--20294002	20	2.1	20	82	8	50	28	7	14	50	1.69
20299046--20299122	40	1.9	40	97	0	145	25	12	29	31	1.93
20300955--20301089	37	3.6	37	90	0	198	18	17	29	34	1.94
20311027--20311128	49	2.1	49	98	0	195	45	12	7	34	1.71
20312257--20312344	45	2.0	45	88	0	131	40	13	21	23	1.89
20312805--20313166	182	2.0	181	98	0	697	45	9	13	31	1.76
20314753--20314870	41	2.9	41	84	2	139	31	20	27	21	1.98
20325763--20325814	6	7.8	6	81	12	50	3	15	0	80	0.85
20325764--20325814	7	7.4	7	80	10	61	3	13	0	82	0.81
20325763--20325823	20	3.0	20	79	15	72	3	14	1	80	0.92
20326232--20326288	11	5.0	11	80	6	60	3	3	12	80	0.96
20327527--20327710	62	3.0	62	94	0	323	33	5	20	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20336086--20336127	23	1.9	22	90	9	68	59	7	0	33	1.25
20336634--20336679	18	2.5	19	82	13	60	39	0	0	60	0.97
20340124--20340198	34	2.1	35	87	4	107	26	9	28	36	1.87
20344528--20344559	16	1.9	17	93	6	57	68	0	3	28	1.04
20356923--20356963	21	1.9	22	85	14	59	0	26	0	73	0.84
20356924--20356999	16	4.8	15	70	15	55	1	21	3	73	1.06
20356945--20357010	35	1.9	35	82	14	84	4	13	6	75	1.14
20359095--20359133	12	3.2	12	100	0	78	25	15	33	25	1.95
20359095--20359141	24	2.0	24	87	8	69	27	14	31	25	1.95
20359591--20359621	2	15.5	2	100	0	62	0	48	0	51	1.00
20364877--20365037	82	2.0	82	85	7	220	34	8	18	39	1.80
20365099--20365259	82	2.0	82	85	7	220	34	8	18	39	1.80
20364843--20365287	222	2.0	222	99	0	881	41	7	13	37	1.73
20366079--20366174	50	1.9	50	80	4	113	40	17	3	38	1.66
20366337--20366384	25	2.0	24	91	4	78	60	0	4	35	1.16
20366521--20366575	25	2.2	25	83	0	65	34	0	1	63	1.05
20369373--20369516	41	3.5	41	82	6	168	22	27	20	28	1.99
20369456--20369598	41	3.5	41	89	3	200	31	23	18	25	1.98
20369933--20370363	203	2.2	198	89	5	636	41	15	4	38	1.68
20371323--20371347	13	1.9	13	100	0	50	40	24	4	32	1.73
20398063--20398249	51	3.7	51	80	3	200	25	17	26	31	1.97
20398246--20398340	45	2.1	45	86	0	136	25	18	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20399530--20399614	41	2.1	41	97	0	161	35	8	22	34	1.84
20401399--20401438	21	1.9	21	94	0	71	22	22	37	17	1.94
20402593--20402732	60	2.3	60	79	3	156	32	22	14	30	1.94
20402680--20402940	52	5.0	53	77	9	198	26	21	17	34	1.96
20402732--20402935	104	2.0	103	84	6	270	24	22	18	34	1.96
20402680--20402943	53	5.0	53	75	12	206	26	21	17	34	1.96
20404745--20404783	19	2.1	19	100	0	78	53	5	10	30	1.56
20405389--20405424	3	12.0	3	100	0	72	66	0	0	33	0.92
20412757--20412791	16	2.1	16	89	10	52	51	0	0	48	1.00
20413058--20413094	14	2.6	15	83	12	51	21	0	32	45	1.52
20413549--20413575	7	3.9	7	100	0	54	0	0	25	74	0.83
20416316--20416367	24	2.2	24	85	0	68	53	9	3	32	1.51
20418945--20419020	23	3.3	23	88	0	116	30	26	21	22	1.99
20420903--20420954	24	2.2	24	89	0	77	55	9	1	32	1.43
20421045--20421109	22	3.0	21	78	13	60	10	10	9	69	1.38
20421045--20421100	11	5.1	11	72	8	51	8	8	10	71	1.31
20421281--20421334	17	3.1	17	73	10	56	35	0	3	61	1.14
20421708--20421744	18	2.0	19	89	5	58	54	18	0	27	1.44
20422794--20422847	24	2.2	24	80	3	63	53	0	3	42	1.18
20422899--20422945	19	2.3	21	82	14	62	31	0	25	42	1.55
20422910--20422965	21	2.7	21	82	15	64	28	0	26	44	1.54
20422959--20422996	19	2.1	19	85	14	53	42	2	18	36	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20424794--20424863	30	2.4	29	80	7	79	60	4	2	32	1.31
20425265--20425298	17	2.1	17	88	5	52	35	0	0	64	0.94
20427437--20427492	27	2.0	27	83	10	69	41	0	5	53	1.24
20427449--20427594	79	1.8	79	100	0	292	45	5	4	44	1.48
20431026--20431242	41	5.3	41	89	0	344	29	18	27	24	1.98
20431026--20431242	82	2.6	82	97	0	407	29	18	27	24	1.98
20437678--20437875	100	2.0	99	97	1	378	28	12	24	34	1.91
20441047--20441200	71	2.2	71	83	2	184	26	22	23	27	2.00
20445571--20445609	20	2.0	20	84	0	51	41	15	12	30	1.85
20456924--20457006	43	1.9	43	90	4	132	36	9	21	32	1.86
20461419--20461469	25	2.1	25	81	3	59	39	17	27	15	1.90
20463329--20463458	46	2.8	46	95	1	224	30	17	2	50	1.59
20465817--20465845	15	2.0	15	93	6	51	55	0	0	44	0.99
20480527--20480575	14	3.7	13	81	10	55	81	0	14	4	0.83
20480530--20480574	19	2.3	19	85	14	65	82	0	13	4	0.82
20480528--20480575	20	2.4	21	82	10	73	81	0	14	4	0.84
20481614--20481661	23	2.1	23	88	0	69	29	16	2	52	1.56
20486543--20486579	17	2.2	16	90	4	56	5	27	5	62	1.39
20488893--20488973	30	2.7	30	83	5	101	29	23	7	39	1.82
20489541--20489603	14	4.7	13	81	14	65	76	1	22	0	0.88
20489547--20489603	26	2.2	26	84	12	73	77	1	21	0	0.86
20489538--20489602	13	5.2	13	75	23	59	75	1	23	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20490256--20490299	20	2.2	20	87	0	61	36	9	11	43	1.72
20490599--20490905	18	16.5	18	68	20	120	31	14	10	43	1.79
20490642--20490920	36	7.6	37	71	18	158	31	14	10	43	1.80
20490691--20490792	53	1.9	53	84	4	134	27	14	10	47	1.78
20490635--20490824	17	10.6	18	72	14	99	27	15	10	46	1.78
20490789--20490921	38	3.5	37	71	12	119	34	14	11	39	1.81
20490642--20490900	18	14.2	18	69	18	135	30	14	10	44	1.80
20490945--20491022	20	4.2	19	80	15	83	43	10	8	37	1.70
20490989--20491102	36	3.1	35	77	15	115	36	7	10	44	1.68
20490959--20491105	21	7.6	20	67	18	87	39	7	10	42	1.67
20490999--20491097	36	2.6	38	84	9	123	34	7	10	48	1.64
20499225--20499302	9	8.4	9	74	16	70	83	8	5	2	0.89
20499226--20499302	10	8.4	9	82	13	61	83	9	5	2	0.89
20499225--20499302	19	4.2	18	82	8	84	83	8	5	2	0.89
20500172--20500793	79	7.9	78	83	8	714	29	18	19	33	1.95
20500172--20500793	240	2.6	228	82	10	714	29	18	19	33	1.95
20500969--20501073	30	3.4	30	73	10	79	34	17	3	44	1.66
20501654--20501708	14	4.4	13	76	15	62	81	0	18	0	0.68
20501647--20501708	13	4.6	14	80	13	69	80	0	19	0	0.71
20501635--20501708	23	3.1	23	81	16	80	79	0	20	0	0.73
20502361--20502404	20	2.1	21	91	4	72	36	11	9	43	1.72
20502678--20502728	15	3.1	15	82	17	66	25	13	11	49	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20502678--20502861	18	11.1	16	68	16	76	30	13	10	45	1.78
20502696--20502923	66	3.5	66	91	5	351	30	14	10	44	1.79
20502872--20503107	35	6.5	36	71	11	142	31	14	10	43	1.79
20502986--20503065	21	4.2	20	72	13	78	35	13	10	41	1.78
20502974--20503108	38	3.6	37	71	7	110	35	11	10	42	1.76
20503012--20503072	21	3.0	21	70	18	56	40	11	9	37	1.75
20503170--20503210	21	2.0	21	85	9	57	46	9	9	34	1.70
20503167--20503223	20	2.8	21	82	15	66	43	10	10	35	1.74
20503162--20503295	36	3.6	36	76	11	103	34	8	10	46	1.70
20507909--20507959	23	2.2	23	89	0	75	25	9	23	41	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203