genome.fa.s17.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  159  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50404547--50404581	17	2.0	17	88	5	52	25	42	20	11	1.85
50407800--50407824	11	2.3	11	100	0	50	32	16	24	28	1.96
50408055--50408161	54	2.0	54	87	3	153	28	23	30	16	1.96
50410615--50410805	35	5.4	35	72	8	134	22	22	24	30	1.99
50410612--50410848	74	3.3	74	73	5	259	22	23	23	30	1.99
50410615--50410918	143	2.1	143	89	1	457	23	23	22	30	1.99
50410612--50410879	74	3.7	74	71	7	217	21	24	23	30	1.99
50413103--50413137	6	5.8	6	89	0	52	51	0	28	20	1.47
50413102--50413145	18	2.4	18	92	0	70	52	2	27	18	1.57
50413270--50413321	25	2.0	26	92	3	88	36	11	17	34	1.86
50415055--50415099	23	2.0	23	91	4	74	37	4	17	40	1.70
50415065--50415109	23	2.0	23	86	4	65	33	4	15	46	1.66
50420956--50420998	15	2.9	14	82	6	50	86	2	4	6	0.79
50421910--50421988	24	3.3	24	90	0	131	34	12	22	30	1.92
50422393--50423045	45	14.6	45	73	6	344	32	18	21	27	1.97
50422399--50423051	178	3.6	177	80	4	580	32	18	21	27	1.96
50422892--50423059	44	3.9	44	81	3	171	32	19	20	27	1.97
50422930--50423116	89	2.1	89	83	5	234	33	20	18	27	1.96
50423265--50423678	131	3.1	132	87	2	600	28	20	25	24	1.99
50424115--50424159	23	2.0	23	86	4	65	40	8	17	33	1.81
50424125--50424170	23	2.0	23	87	4	67	32	8	15	43	1.77
50426714--50426854	70	2.0	70	100	0	282	29	15	14	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50429294--50429318	9	2.8	9	100	0	50	8	0	24	68	1.16
50429474--50429521	21	2.3	21	78	3	53	29	25	14	31	1.95
50429470--50429522	26	2.0	26	81	0	61	30	24	13	32	1.93
50433277--50433312	18	2.0	18	100	0	72	27	16	38	16	1.90
50435975--50436015	20	2.0	20	100	0	82	26	19	14	39	1.90
50439353--50439397	18	2.5	18	85	0	63	31	0	20	48	1.49
50445530--50445578	20	2.5	20	93	0	80	34	0	4	61	1.15
50445542--50445589	20	2.4	19	80	13	51	45	0	2	52	1.12
50445684--50445729	23	1.9	25	86	8	69	50	2	0	47	1.13
50447938--50448000	20	3.3	19	73	22	69	68	3	3	25	1.19
50447938--50448000	10	6.6	10	73	14	53	68	3	3	25	1.19
50452834--50452876	13	3.1	13	83	10	50	53	13	23	9	1.69
50452849--50452876	8	3.5	8	100	0	56	53	10	25	10	1.67
50467644--50467704	24	2.7	21	76	18	59	45	18	9	26	1.80
50468202--50468316	42	2.8	41	78	4	131	17	37	25	20	1.94
50472964--50473577	78	7.7	78	72	13	331	34	8	21	35	1.83
50473135--50473166	16	2.0	16	93	0	55	46	6	28	18	1.73
50473063--50473244	94	1.9	94	90	0	292	37	7	22	32	1.81
50472979--50473589	156	3.7	171	79	11	624	35	8	21	35	1.83
50473151--50473589	78	5.6	78	88	0	601	34	7	20	36	1.82
50473151--50473589	234	1.9	234	89	0	682	34	7	20	36	1.82
50478086--50478124	18	2.2	18	85	0	51	2	17	0	79	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50492292--50492344	14	3.6	14	80	9	70	62	0	3	33	1.13
50492311--50492363	12	4.5	11	78	21	54	64	1	1	32	1.15
50492277--50492412	30	4.8	29	75	18	133	65	1	2	30	1.13
50492311--50492363	11	4.5	11	80	13	61	64	1	1	32	1.15
50492287--50492393	53	2.0	52	87	8	155	65	0	2	30	1.13
50494925--50495003	12	6.7	12	73	11	56	49	10	13	26	1.74
50494924--50494979	23	2.4	24	78	3	60	51	7	14	26	1.67
50495034--50495071	18	2.1	18	85	9	51	60	7	15	15	1.57
50504421--50504461	17	2.3	18	80	12	50	31	17	2	48	1.60
50504780--50504850	25	2.9	25	77	4	74	33	19	25	21	1.97
50504897--50505000	25	4.2	25	71	12	72	37	18	22	22	1.94
50506781--50506834	22	2.3	24	84	9	67	61	7	0	31	1.24
50508618--50508713	42	2.3	42	79	0	111	17	22	17	41	1.90
50508694--50508734	21	2.0	21	90	0	64	12	29	19	39	1.88
50508646--50508776	63	2.1	63	84	2	165	16	22	16	44	1.86
50509681--50509745	30	2.2	30	85	0	94	16	29	29	24	1.97
50511235--50511302	32	2.1	32	83	5	84	32	11	10	45	1.74
50515664--50515738	37	2.0	40	87	10	113	61	0	4	34	1.15
50518345--50518371	2	13.5	2	100	0	54	48	0	0	51	1.00
50519579--50519611	15	2.3	15	89	5	50	21	3	18	57	1.53
50519965--50520031	29	2.3	29	79	2	82	32	11	19	35	1.88
50525447--50525496	19	2.6	18	87	9	64	40	24	0	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50530691--50530796	41	2.6	41	95	0	185	21	21	25	31	1.98
50533755--50533896	57	2.5	57	87	5	189	24	12	13	49	1.77
50535263--50535290	13	2.2	13	100	0	56	64	0	14	21	1.29
50536195--50536242	25	2.0	25	87	4	71	14	22	20	41	1.89
50536318--50536385	26	2.7	25	77	6	66	19	25	20	35	1.96
50541044--50541114	36	2.0	36	88	0	106	47	15	11	25	1.78
50545886--50545980	48	2.0	48	95	0	172	43	21	15	20	1.88
50546174--50546237	17	3.6	17	74	15	67	46	14	12	26	1.79
50546192--50546245	17	2.9	19	71	20	60	46	16	12	24	1.82
50546175--50546245	36	2.0	36	97	0	133	46	15	12	25	1.81
50558819--50558848	13	2.4	13	94	5	53	60	0	0	40	0.97
50558819--50558862	22	2.0	23	82	13	56	59	2	0	38	1.10
50559113--50559143	9	3.4	9	90	0	53	12	0	25	61	1.32
50559107--50559143	18	2.1	18	94	0	65	18	0	24	56	1.41
50559339--50559798	126	3.7	126	91	1	647	32	17	21	28	1.96
50562546--50563210	22	30.8	21	84	5	783	24	0	28	46	1.58
50562546--50563218	43	15.6	43	85	4	836	24	0	28	46	1.58
50562546--50563218	65	10.4	65	85	5	837	24	0	28	46	1.58
50564451--50564476	7	3.7	7	100	0	52	57	15	0	26	1.38
50564643--50564681	20	2.0	20	85	10	53	53	7	2	35	1.43
50565620--50565720	52	2.0	51	80	5	114	45	1	26	25	1.64
50565698--50565755	11	5.2	11	82	2	62	46	1	29	22	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50567704--50567737	12	2.8	12	95	0	59	35	8	32	23	1.86
50567704--50567741	15	2.5	15	95	0	67	34	10	31	23	1.89
50576314--50576344	2	15.5	2	100	0	62	0	48	0	51	1.00
50576884--50576939	27	2.1	26	86	3	76	17	10	17	53	1.72
50576884--50576946	27	2.4	25	82	12	72	19	9	17	53	1.70
50577695--50577774	27	3.0	27	83	7	74	15	10	17	57	1.64
50578631--50578665	16	2.2	16	89	0	52	5	25	0	68	1.11
50580930--50580981	27	1.9	27	88	0	77	11	11	11	65	1.48
50583567--50583613	16	3.0	16	78	3	51	10	36	19	34	1.86
50590806--50590868	13	4.8	14	77	11	62	31	7	23	36	1.84
50590806--50590870	26	2.5	27	80	7	80	33	7	23	35	1.83
50591267--50591303	18	2.1	18	100	0	74	43	10	5	40	1.63
50609741--50609795	16	3.4	16	82	0	65	32	27	3	36	1.74
50615833--50615873	21	2.0	21	90	0	64	29	21	29	19	1.98
50625625--50625670	21	2.3	21	81	7	60	36	23	13	26	1.91
50626718--50626767	16	3.0	17	82	8	59	54	2	2	42	1.23
50635106--50635176	35	2.0	35	100	0	142	22	22	14	40	1.89
50640350--50640383	17	2.0	17	88	0	50	64	0	0	35	0.94
50640313--50640456	40	3.5	40	84	10	184	59	0	2	36	1.17
50640373--50640434	30	2.1	29	82	14	74	58	0	3	38	1.15
50644119--50644189	15	4.7	14	78	18	63	47	1	8	42	1.42
50644136--50644178	19	2.3	19	84	8	52	46	2	6	44	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50645809--50645843	11	3.1	12	88	12	56	80	0	20	0	0.72
50647543--50647593	25	2.0	25	100	0	102	27	25	11	35	1.91
50654146--50654188	22	2.0	22	81	9	52	32	9	4	53	1.53
50654872--50654961	43	2.1	43	87	4	128	25	28	18	26	1.98
50654935--50655016	44	1.9	43	82	5	103	19	18	19	42	1.89
50656186--50656222	12	3.1	12	100	0	74	48	16	16	18	1.81
50659123--50659163	22	1.9	21	85	14	57	56	24	0	19	1.42
50659187--50659256	16	4.4	16	67	16	56	50	21	1	27	1.57
50659190--50659265	23	3.3	23	73	23	86	48	22	1	27	1.58
50659692--50659887	41	4.8	40	86	7	259	39	26	16	17	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203