genome.fa.s17.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  128  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40623029--40623074	23	2.0	23	91	0	74	41	28	15	15	1.87
40624998--40625039	17	2.4	18	76	4	50	42	0	0	57	0.99
40638703--40638734	15	2.0	17	88	11	50	34	0	18	46	1.49
40653152--40653182	11	2.8	11	95	0	53	32	19	12	35	1.90
40660150--40660267	26	4.5	26	85	0	137	30	13	22	33	1.93
40660416--40660533	54	2.2	55	78	4	132	38	11	26	24	1.89
40660692--40660725	18	1.9	17	94	5	59	44	2	35	17	1.64
40660730--40660767	18	2.0	21	85	15	55	39	2	42	15	1.61
40661144--40661185	16	2.7	16	88	3	59	33	16	11	38	1.86
40662568--40662626	21	2.8	21	85	10	68	57	3	1	37	1.25
40662877--40662920	20	2.2	20	100	0	88	27	9	18	45	1.79
40663852--40663909	29	2.2	27	82	17	77	51	1	1	44	1.21
40675566--40675603	13	3.2	12	88	7	51	0	21	5	73	1.02
40678127--40678246	43	2.8	43	80	12	147	33	30	18	18	1.95
40681477--40681607	43	3.1	43	83	1	156	29	22	17	30	1.97
40681545--40681763	114	1.9	113	90	2	350	27	16	13	41	1.87
40682091--40682141	21	2.4	21	86	0	66	1	43	19	35	1.63
40682026--40682194	87	1.9	87	86	2	241	12	28	20	38	1.89
40683597--40684760	582	2.0	582	98	0	2247	32	17	15	34	1.91
40688193--40688290	16	6.0	16	74	17	94	33	0	17	48	1.47
40688184--40688290	41	2.6	41	82	11	128	33	0	17	48	1.48
40688183--40688290	25	4.3	25	88	4	130	34	0	17	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40690901--40690980	41	2.0	40	83	16	103	21	18	20	40	1.92
40691367--40691407	14	2.7	15	85	7	57	41	39	0	19	1.52
40691829--40691954	63	2.0	63	95	0	225	34	29	7	28	1.85
40691844--40691944	31	3.2	30	67	18	80	32	28	8	29	1.88
40692240--40692324	21	4.0	20	72	11	53	45	31	1	21	1.59
40692248--40692327	14	5.6	14	70	14	56	47	31	0	21	1.51
40692384--40692941	115	4.9	114	75	5	464	25	22	18	32	1.97
40695342--40695621	68	4.1	68	78	8	207	27	20	14	37	1.92
40695411--40695584	67	2.6	67	85	6	226	25	22	16	35	1.94
40701872--40701919	24	2.0	24	87	0	69	33	10	37	18	1.85
40702001--40702060	29	2.1	29	100	0	120	36	10	0	53	1.35
40708124--40708268	66	2.2	66	92	1	236	43	22	13	20	1.86
40710962--40710997	7	5.0	7	89	3	54	58	13	16	11	1.63
40716899--40716964	27	2.4	27	77	7	71	24	18	28	28	1.98
40729220--40729322	28	3.6	27	73	10	82	31	14	26	28	1.95
40729196--40729377	29	6.4	28	70	11	102	32	16	24	26	1.96
40729254--40729422	86	2.0	85	86	1	239	30	18	25	26	1.98
40729254--40729377	29	4.3	29	77	10	119	30	18	25	25	1.98
40729197--40729350	57	2.7	57	86	2	211	32	15	25	26	1.95
40739630--40740040	47	8.7	47	97	0	750	32	8	30	29	1.86
40740159--40740237	37	2.1	37	90	0	122	24	18	31	25	1.98
40741000--40741110	55	2.0	55	100	0	222	43	7	16	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40742147--40742246	43	2.3	43	98	0	191	23	15	36	26	1.93
40742555--40742815	40	6.5	40	82	3	287	24	22	27	24	2.00
40746294--40746516	47	4.7	47	96	1	392	30	8	30	30	1.88
40746634--40746712	37	2.1	37	90	0	122	24	18	31	25	1.98
40747747--40747842	48	2.0	48	97	0	183	30	15	33	20	1.94
40748652--40748721	29	2.4	29	85	4	88	28	14	31	25	1.95
40749036--40749336	40	7.5	40	84	1	354	25	22	26	25	2.00
40750178--40750277	50	2.0	50	100	0	200	30	8	20	42	1.80
40752806--40752884	25	3.3	25	64	10	74	32	5	27	34	1.79
40752793--40753015	47	4.7	47	94	1	383	30	9	29	30	1.89
40753133--40753211	37	2.1	37	88	0	113	24	17	31	26	1.97
40755077--40755179	43	2.4	43	98	0	197	22	15	36	25	1.93
40755161--40755234	29	2.6	29	89	4	105	25	16	32	25	1.96
40755547--40755902	40	8.9	40	83	2	369	24	22	27	25	2.00
40755547--40755897	120	2.9	120	82	3	413	24	22	27	25	2.00
40761553--40761699	45	3.2	45	64	11	111	41	23	4	29	1.75
40761552--40761733	91	2.0	91	90	4	287	40	22	4	31	1.75
40761671--40761987	69	4.6	69	77	7	320	39	21	5	33	1.77
40761599--40761981	206	1.9	206	93	0	658	38	22	5	32	1.78
40761595--40761987	23	17.2	23	72	9	284	39	21	5	33	1.77
40763877--40763915	21	2.0	18	85	14	51	43	10	10	35	1.73
40765562--40765774	40	5.3	40	82	1	239	23	21	16	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40765562--40765767	80	2.6	80	84	1	270	24	22	16	37	1.93
40765782--40765809	13	2.2	13	100	0	56	50	21	14	14	1.78
40779670--40779887	111	2.0	110	79	2	240	30	13	20	35	1.91
40780472--40780516	20	2.2	20	84	0	54	42	0	17	40	1.50
40783217--40783389	41	4.2	41	88	1	224	36	24	17	20	1.94
40783410--40783516	54	2.0	54	81	3	126	49	29	0	20	1.49
40783661--40783803	71	2.0	71	98	0	277	42	11	21	24	1.85
40796480--40796611	49	2.7	49	79	6	142	21	24	23	31	1.98
40796670--40796795	46	2.8	45	84	8	166	23	29	19	27	1.98
40801919--40802056	48	2.8	49	80	4	154	23	24	23	28	2.00
40801919--40802060	49	2.9	49	82	2	169	23	24	23	28	1.99
40822514--40822711	91	2.2	92	83	0	254	45	18	19	16	1.85
40823162--40823201	10	4.0	10	81	12	55	57	2	0	40	1.12
40823167--40823207	20	2.0	20	95	0	73	56	2	0	41	1.13
40830018--40830045	14	2.0	14	100	0	56	64	14	0	21	1.29
40830343--40830381	14	2.7	14	84	4	51	64	2	0	33	1.08
40837990--40838293	151	2.0	150	97	1	574	41	14	20	24	1.89
40839358--40839527	40	4.3	40	90	0	216	24	21	28	25	1.99
40839305--40839529	80	2.8	79	82	3	236	24	21	28	25	1.99
40839380--40839562	79	2.3	80	82	1	226	25	21	27	25	1.99
40847293--40847542	40	6.3	40	90	3	292	24	21	28	26	1.99
40847240--40847542	80	3.8	79	84	3	342	25	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40847240--40847542	120	2.5	119	83	3	358	25	21	27	26	1.99
40858881--40858919	20	2.0	20	90	5	62	38	2	0	58	1.12
40864780--40864813	17	2.1	17	88	5	52	47	0	0	52	1.00
40878003--40878097	45	2.1	45	92	0	163	26	18	24	30	1.98
40878141--40878184	23	1.9	22	82	17	54	38	0	25	36	1.56
40880428--40880562	24	5.6	25	76	8	127	37	18	25	19	1.94
40880438--40880549	48	2.3	48	96	0	206	34	20	26	17	1.95
40881680--40881707	13	2.2	13	100	0	56	21	14	0	64	1.29
40887759--40888001	124	2.0	124	92	1	407	39	21	11	27	1.89
40904353--40904382	16	1.9	16	93	6	53	26	0	20	53	1.46
40907045--40907070	13	2.0	13	100	0	52	30	30	23	15	1.95
40917127--40917215	43	2.1	43	89	0	133	44	22	16	15	1.86
40922725--40922791	25	2.7	25	88	0	98	25	19	23	31	1.98
40929076--40929167	46	2.0	46	100	0	184	23	28	6	41	1.79
40930013--40930088	27	2.9	26	75	12	75	43	7	14	34	1.74
40936142--40936234	29	3.2	28	68	17	66	31	20	22	25	1.98
40937996--40938165	57	3.0	56	80	3	180	30	15	27	27	1.96
40944970--40945180	47	4.4	47	82	7	244	32	9	29	28	1.88
40944972--40945128	51	3.2	50	85	10	218	31	7	29	31	1.85
40944972--40945165	98	2.0	98	86	2	273	31	9	30	28	1.88
40945299--40945376	36	2.1	37	88	2	113	24	19	32	24	1.98
40947355--40947394	20	2.0	20	90	0	62	30	10	25	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40950487--40950858	40	9.3	39	81	5	431	26	28	20	23	1.99
40950487--40950848	80	4.5	80	96	0	645	27	28	20	23	1.99
40953798--40953920	62	2.0	63	93	1	212	21	22	21	33	1.97
40954909--40955196	145	2.0	145	99	0	567	33	25	18	22	1.97
40958208--40958410	47	4.3	47	84	5	261	32	8	30	28	1.87
40958230--40958305	25	3.2	25	63	24	63	31	6	31	30	1.83
40958244--40958318	22	3.3	22	68	23	64	30	9	32	28	1.88
40958337--40958399	22	2.8	23	71	20	69	34	6	30	28	1.82
40958319--40958376	31	1.9	30	82	10	73	34	6	29	29	1.83
40958352--40958391	15	2.6	16	81	18	50	37	0	27	35	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203