genome.fa.s17.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  166  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52513602--52513628	5	5.4	5	100	0	54	22	0	0	77	0.76
52514601--52514675	9	7.3	10	72	23	50	57	1	1	40	1.16
52514661--52514705	21	2.1	21	91	0	72	64	0	2	33	1.06
52514693--52514717	9	2.8	9	100	0	50	76	0	0	24	0.80
52528118--52528150	11	3.1	11	86	8	50	30	0	0	69	0.88
52530515--52530561	22	2.1	23	88	4	69	51	10	4	34	1.56
52530857--52530889	14	2.3	15	89	5	50	42	0	3	54	1.15
52531463--52531505	20	2.0	21	86	8	61	39	0	4	55	1.20
52535577--52536053	236	2.0	237	92	0	794	39	10	15	34	1.82
52537343--52537433	25	3.8	24	68	15	62	19	23	16	40	1.91
52541328--52541362	15	2.2	16	90	5	54	42	14	0	42	1.45
52543257--52543294	19	2.0	19	100	0	76	26	0	21	52	1.47
52549953--52549998	21	2.2	21	88	0	65	28	2	23	45	1.65
52549980--52550042	28	2.2	28	75	10	67	28	6	23	41	1.79
52552496--52553675	590	2.0	590	100	0	2360	21	27	24	25	2.00
52556859--52556884	6	4.3	6	100	0	52	30	0	0	69	0.89
52556958--52556987	7	4.3	7	95	0	51	40	0	0	60	0.97
52556981--52557024	21	2.1	21	87	4	63	52	2	2	43	1.26
52562912--52562948	11	3.5	11	88	7	58	81	0	0	18	0.70
52562912--52562947	5	6.8	5	90	9	54	80	0	0	19	0.71
52570759--52570872	59	1.9	59	96	0	210	25	13	28	32	1.93
52571128--52571161	9	3.7	9	88	4	50	67	2	0	29	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52572822--52572871	26	1.9	26	84	8	66	44	2	2	52	1.24
52575881--52575939	30	2.0	30	90	6	93	28	1	6	62	1.30
52576371--52576623	125	2.0	124	95	3	434	43	21	2	32	1.66
52577176--52577237	25	2.4	25	84	7	81	35	17	25	20	1.95
52577175--52577286	25	4.5	25	74	8	68	33	21	25	19	1.97
52577323--52577387	25	2.6	25	90	0	103	43	20	18	18	1.89
52579102--52579154	19	2.7	19	77	16	54	43	11	7	37	1.69
52599247--52599286	18	2.2	19	90	4	64	45	5	15	35	1.68
52621098--52621124	3	9.0	3	100	0	54	0	33	0	66	0.92
52630819--52630857	20	2.0	20	84	0	51	69	2	17	10	1.28
52631823--52631909	21	4.0	21	80	8	86	33	8	3	55	1.46
52638481--52638527	22	2.1	23	88	4	69	48	0	4	46	1.21
52639932--52639973	17	2.6	17	81	7	52	64	2	0	33	1.07
52641044--52641082	3	13.0	3	100	0	78	33	0	0	66	0.92
52644936--52645087	10	15.9	10	70	24	73	46	0	0	53	1.05
52644929--52644993	30	2.2	30	94	0	112	43	1	0	55	1.09
52644909--52645066	73	2.2	72	94	3	280	41	0	0	57	1.03
52645002--52645096	30	3.2	30	96	0	172	45	1	0	53	1.07
52644929--52645139	103	2.1	100	95	2	377	42	1	0	55	1.08
52645019--52645083	13	3.8	18	69	26	61	47	0	0	52	1.00
52645039--52645156	41	2.9	39	79	12	130	40	2	0	56	1.13
52645131--52645192	31	2.0	30	81	9	72	33	1	3	61	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52645069--52645172	52	2.0	51	92	5	174	38	2	0	58	1.13
52646493--52646528	3	12.0	3	87	0	54	61	0	38	0	0.96
52647147--52647181	18	1.9	19	88	11	56	71	11	8	8	1.31
52647319--52647387	29	2.4	28	74	11	68	21	17	18	42	1.90
52647685--52647924	125	1.9	125	90	0	381	34	16	19	29	1.94
52651222--52651294	35	2.1	35	100	0	146	39	16	16	27	1.90
52652161--52652353	105	1.8	105	82	6	248	43	11	9	35	1.74
52659633--52659668	15	2.4	15	90	0	54	69	2	2	25	1.15
52668062--52668099	2	19.0	2	100	0	76	50	0	50	0	1.00
52669646--52669670	9	2.8	9	100	0	50	12	0	0	88	0.53
52670381--52670434	24	2.2	24	90	0	81	37	29	3	29	1.75
52670804--52670834	15	2.1	15	100	0	62	61	6	6	25	1.45
52672992--52673024	17	1.9	17	93	0	57	60	0	0	39	0.97
52674047--52674125	33	2.4	32	83	4	95	44	17	11	26	1.83
52674127--52674166	20	2.0	20	90	0	62	55	12	5	27	1.58
52680939--52680979	21	2.0	21	90	0	64	19	29	21	29	1.98
52684572--52684623	6	8.3	6	85	8	61	78	1	1	17	0.93
52686972--52687007	15	2.5	14	86	8	54	44	8	0	47	1.33
52690223--52690276	22	2.5	21	76	8	54	38	20	1	38	1.63
52691260--52691313	22	2.5	23	80	17	62	59	3	0	37	1.15
52693829--52693876	25	1.9	25	100	0	96	37	25	12	25	1.91
52695060--52695117	28	2.1	28	100	0	116	37	12	17	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52699295--52699335	19	2.2	19	86	4	57	60	7	0	31	1.24
52699557--52699603	22	2.1	23	88	4	69	36	2	2	59	1.21
52708791--52708864	34	2.1	35	82	2	87	21	17	21	39	1.93
52713804--52713872	20	3.2	21	75	21	63	44	2	1	50	1.25
52713935--52713961	7	3.9	7	100	0	54	44	11	0	44	1.39
52714018--52714069	16	3.2	16	94	0	95	36	0	34	28	1.58
52714007--52714069	32	2.0	32	93	0	108	36	1	34	26	1.67
52714048--52714157	45	2.6	43	80	9	129	33	5	29	31	1.80
52714283--52714324	15	2.7	16	82	14	52	52	2	0	45	1.13
52714292--52714333	15	2.9	15	82	10	52	52	0	0	47	1.00
52714363--52714431	33	2.1	33	91	0	111	52	11	1	34	1.47
52716679--52716711	16	2.1	16	94	0	57	63	15	15	6	1.49
52750851--52750901	22	2.5	20	84	9	59	17	5	0	76	0.98
52750851--52750901	19	2.5	20	80	17	61	17	5	0	76	0.98
52754394--52754446	28	1.9	28	84	3	72	43	7	3	45	1.50
52761358--52761411	19	2.8	19	91	0	90	37	7	16	38	1.77
52761358--52761434	42	1.9	40	84	10	104	36	6	16	40	1.75
52767807--52768494	44	15.5	44	76	5	605	27	16	25	30	1.97
52767807--52768482	133	5.1	133	93	0	1145	28	15	26	30	1.96
52767807--52768494	89	7.8	90	76	5	522	27	16	25	30	1.97
52767807--52768868	266	4.0	263	81	6	796	27	20	25	26	1.99
52768659--52768866	43	4.8	44	63	9	111	25	29	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52768475--52768866	175	2.2	176	90	0	606	26	28	24	20	1.99
52768650--52768863	45	4.9	44	64	10	123	26	28	24	20	1.99
52768475--52768879	88	4.6	88	88	0	596	26	28	24	20	1.99
52768879--52769044	44	3.8	44	86	1	226	27	17	25	28	1.98
52770076--52770133	19	2.7	22	79	10	59	36	6	17	39	1.76
52772450--52772501	24	2.2	24	85	0	68	55	11	1	30	1.46
52774659--52774725	18	3.7	19	74	20	72	46	0	0	53	1.00
52774708--52774743	14	2.6	14	91	8	56	55	0	0	44	0.99
52782041--52782153	55	2.1	55	94	0	199	37	5	15	41	1.70
52782696--52783631	128	7.3	128	99	0	1854	22	12	20	44	1.85
52783601--52783863	43	6.1	43	82	5	207	21	13	20	44	1.85
52782822--52783857	85	12.1	85	70	12	371	22	12	20	44	1.85
52782690--52783863	128	9.2	130	93	3	298	22	12	20	44	1.85
52786494--52786518	11	2.3	11	100	0	50	0	8	0	92	0.40
52791349--52791386	7	5.4	7	93	0	67	86	0	10	2	0.66
52797162--52797295	42	3.1	43	79	8	139	23	15	26	34	1.95
52800035--52800507	134	3.5	133	76	5	409	34	16	11	37	1.85
52812529--52812566	15	2.5	15	87	12	51	50	0	2	47	1.15
52826699--52826846	43	3.5	43	84	9	178	29	25	19	25	1.98
52826726--52826895	43	4.0	43	84	8	181	34	26	18	20	1.96
52832684--52832795	41	2.7	41	80	2	118	38	17	16	26	1.92
52837900--52837945	21	2.1	22	88	4	67	65	0	2	32	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52846871--52846896	7	3.7	7	100	0	52	26	0	26	46	1.53
52850556--52850661	45	2.4	43	80	9	108	42	5	23	28	1.77
52854780--52855095	67	4.7	67	79	3	316	26	24	14	35	1.93
52854809--52855095	133	2.1	134	81	1	326	27	24	13	34	1.92
52868477--52869115	67	9.6	67	81	3	678	24	21	15	38	1.93
52880467--52880496	13	2.3	13	100	0	60	40	43	0	16	1.48
52880639--52880713	9	8.2	9	82	8	80	21	10	25	42	1.85
52880872--52880896	12	2.1	12	100	0	50	16	24	36	24	1.94
52882080--52882131	28	1.9	26	88	7	77	48	0	7	44	1.31
52882551--52882753	41	4.9	41	83	0	217	22	19	23	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203