genome.fa.s17.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  192  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61205270--61205315	24	1.9	24	86	0	65	28	0	15	56	1.39
61206578--61206705	63	2.0	64	96	1	240	37	10	16	35	1.82
61214617--61214681	22	3.0	21	82	10	69	47	0	3	49	1.17
61216044--61216107	17	3.6	17	74	15	67	29	12	10	46	1.76
61216036--61216106	36	2.0	36	97	0	133	28	12	12	46	1.78
61216035--61216091	19	3.1	19	71	19	66	28	12	14	45	1.80
61216309--61216405	48	2.0	48	85	0	131	18	18	19	43	1.89
61221180--61221243	17	3.6	17	74	15	67	26	12	14	46	1.79
61221172--61221242	36	2.0	36	97	0	133	25	12	15	46	1.81
61221171--61221227	19	3.1	19	71	19	66	26	12	15	45	1.82
61221448--61221542	49	1.9	49	93	0	163	16	15	23	44	1.86
61221666--61221722	27	2.2	26	81	12	64	50	7	7	35	1.56
61229222--61229273	26	2.0	27	88	3	79	42	38	3	15	1.65
61236413--61236483	25	2.8	25	76	4	63	39	23	14	22	1.91
61243462--61243487	5	5.2	5	100	0	52	42	57	0	0	0.98
61243671--61243705	13	2.5	14	90	9	54	48	17	2	31	1.61
61245013--61245046	6	5.7	6	96	0	59	55	14	0	29	1.40
61245013--61245052	18	2.2	18	86	0	53	57	12	2	27	1.48
61245117--61245155	19	2.0	20	85	5	53	15	20	0	64	1.30
61245403--61245447	22	2.0	23	82	4	56	46	13	20	20	1.83
61245453--61245507	21	2.7	20	80	8	65	38	14	18	29	1.90
61250571--61250609	20	1.9	21	89	5	62	56	0	5	38	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61258452--61258499	25	2.0	24	88	12	71	41	8	0	50	1.33
61258768--61258797	10	3.0	10	100	0	60	70	20	10	0	1.16
61262296--61262384	44	2.0	44	88	0	133	41	13	21	23	1.88
61267050--61267096	24	2.0	24	95	0	85	40	19	14	25	1.90
61267216--61267303	44	2.0	44	95	0	158	52	22	13	11	1.72
61267480--61267529	19	2.6	19	93	0	82	22	10	48	20	1.79
61268096--61268131	18	1.9	19	88	5	56	69	0	5	25	1.10
61268153--61268183	15	2.0	16	93	6	55	64	0	0	35	0.94
61268103--61268205	49	2.0	52	85	9	142	54	0	0	43	1.13
61274296--61274481	90	2.0	91	91	2	302	24	17	21	36	1.95
61275443--61275712	102	2.7	100	82	10	309	31	21	18	29	1.97
61276109--61276147	18	2.2	17	86	13	53	33	2	2	61	1.23
61277444--61277494	23	2.2	23	92	0	84	41	21	9	27	1.84
61280446--61280484	20	2.0	20	100	0	78	51	20	0	28	1.48
61287594--61287649	26	2.2	26	80	6	60	75	5	3	16	1.13
61288733--61288791	28	2.1	28	90	6	93	30	22	6	40	1.79
61289440--61289490	3	16.7	3	95	4	93	66	0	31	1	1.03
61290350--61290384	17	2.0	18	88	5	54	11	14	5	68	1.37
61297344--61297386	20	2.2	20	100	0	86	34	4	13	46	1.65
61299194--61299265	25	2.9	25	80	0	90	20	30	18	30	1.96
61303829--61303908	25	3.2	25	78	5	65	32	16	28	22	1.95
61303845--61303916	25	2.9	25	85	0	99	31	18	31	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61310882--61310969	25	3.6	24	75	7	79	31	14	31	21	1.94
61316276--61316330	24	2.3	23	79	11	67	30	3	5	60	1.37
61321711--61322213	88	5.7	87	79	4	467	35	14	16	33	1.90
61321713--61322213	264	1.9	264	83	4	652	35	14	16	33	1.90
61338627--61338659	3	11.0	3	100	0	66	66	0	33	0	0.92
61346871--61346906	18	2.0	18	88	0	54	52	19	13	13	1.74
61348458--61348529	25	2.9	24	80	12	58	31	25	16	26	1.96
61359871--61359956	37	2.3	37	87	2	118	25	18	16	39	1.91
61360567--61360599	3	11.3	3	87	6	50	72	0	27	0	0.85
61360567--61360609	20	2.2	20	83	8	52	69	4	25	0	1.07
61360629--61360685	21	2.6	21	81	13	62	59	0	29	10	1.31
61376491--61376834	102	3.4	101	84	2	442	29	14	25	30	1.95
61376491--61376828	51	6.7	50	79	5	331	29	14	25	30	1.95
61379594--61379641	21	2.3	21	88	0	69	29	22	33	14	1.94
61380189--61380255	33	2.0	33	94	0	116	62	4	1	31	1.24
61380189--61380264	33	2.3	33	88	0	98	63	7	1	27	1.30
61384103--61384152	21	2.4	21	89	0	73	34	20	10	36	1.86
61390094--61390128	3	11.7	3	100	0	70	68	0	0	31	0.90
61390232--61390261	14	2.1	14	100	0	60	20	0	13	66	1.24
61390280--61390321	19	2.3	18	80	15	50	47	9	0	42	1.36
61393193--61393228	19	1.9	19	88	5	56	72	2	16	8	1.21
61394087--61394271	44	4.3	42	75	10	142	27	20	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61394092--61394325	128	1.8	128	84	3	319	29	19	19	31	1.97
61394117--61394325	44	4.9	42	72	16	135	27	20	20	32	1.97
61394779--61394830	24	2.2	24	96	0	95	28	28	11	30	1.92
61399156--61399232	38	2.0	38	100	0	154	25	20	12	40	1.89
61403525--61403556	13	2.5	13	100	0	64	15	15	0	68	1.21
61407552--61407812	130	2.0	130	96	1	488	47	16	14	22	1.82
61410747--61410849	24	4.5	22	73	17	75	60	3	3	32	1.33
61411117--61411150	17	1.9	18	88	5	52	61	0	14	23	1.33
61416847--61416908	24	2.6	24	72	10	63	53	1	1	43	1.20
61425237--61425549	110	2.8	112	82	3	342	31	23	19	25	1.98
61425346--61425564	117	1.9	113	86	3	312	31	23	20	24	1.98
61431790--61431828	19	2.1	19	85	9	53	38	7	12	41	1.72
61432062--61432107	19	2.3	20	78	14	51	80	10	2	6	0.98
61435504--61435829	51	6.3	51	69	20	221	32	13	25	28	1.94
61435695--61435731	7	5.3	7	90	0	56	37	5	29	27	1.79
61435499--61435895	210	1.9	210	96	0	731	31	14	26	27	1.95
61436553--61436672	57	2.1	59	87	3	172	12	18	11	57	1.64
61436689--61436871	80	2.3	81	80	5	201	32	9	2	55	1.44
61436914--61436954	20	2.1	19	86	4	55	29	9	0	60	1.28
61441362--61441544	80	2.3	81	80	5	201	32	9	2	55	1.45
61471045--61471214	48	3.9	42	73	13	128	32	22	14	30	1.94
61471118--61471241	48	2.6	48	89	1	178	30	23	14	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61471131--61471256	48	2.6	48	89	0	189	32	22	15	30	1.94
61471248--61471342	32	3.1	30	72	13	93	47	16	5	30	1.69
61471248--61471342	30	3.1	32	73	18	85	47	16	5	30	1.69
61477686--61477715	14	2.1	14	93	0	51	13	10	23	53	1.69
61482702--61482888	51	3.7	49	75	5	178	31	26	16	26	1.96
61482693--61482918	101	2.2	101	79	6	253	30	27	15	26	1.96
61488349--61488434	45	1.9	45	90	0	136	33	23	15	27	1.94
61488518--61488603	45	1.9	45	90	0	136	34	24	13	26	1.93
61488333--61488669	169	2.0	168	93	2	579	31	25	17	26	1.97
61492275--61492307	15	2.3	15	89	5	50	42	12	12	33	1.79
61496196--61496317	44	2.8	44	88	5	149	27	26	18	27	1.98
61496328--61496546	88	2.5	88	92	0	348	21	24	26	27	1.99
61497873--61497905	14	2.3	15	89	5	50	27	33	12	27	1.92
61500448--61500513	22	3.1	22	62	33	54	18	19	12	50	1.78
61500429--61500513	41	2.1	41	97	0	161	17	17	15	49	1.80
61502966--61503006	3	13.7	3	94	0	73	68	0	0	31	0.90
61503486--61503539	19	2.8	19	91	0	90	37	14	9	38	1.79
61504547--61504625	23	3.2	24	71	8	70	58	1	2	37	1.20
61507716--61508037	161	2.0	161	99	0	635	24	18	14	43	1.87
61515147--61515184	17	2.2	19	86	13	55	44	2	10	42	1.52
61518978--61519017	20	2.0	20	90	0	62	32	17	7	42	1.77
61519191--61519299	41	2.8	40	79	6	125	35	22	14	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61519172--61519299	41	3.2	40	73	11	122	35	21	14	28	1.93
61519452--61519498	24	2.0	24	84	16	62	51	17	0	31	1.46
61520015--61520106	4	22.5	4	72	16	64	3	21	2	72	1.09
61520120--61520211	35	2.5	36	81	10	89	44	2	2	51	1.25
61524856--61524991	37	3.5	40	76	7	143	34	25	14	25	1.94
61525149--61525195	24	2.0	24	84	16	62	51	17	0	31	1.46
61526684--61526713	16	1.9	15	93	6	51	50	0	0	50	1.00
61530014--61530054	22	2.0	22	85	9	59	36	0	2	60	1.10
61531520--61531555	18	1.9	19	88	5	56	30	2	2	63	1.22
61531808--61531862	28	2.0	28	81	0	65	38	3	1	56	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203