genome.fa.s17.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  100  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31603071--31603247	51	3.5	51	77	0	192	33	16	23	26	1.96
31603071--31603305	102	2.3	102	89	0	362	31	17	24	27	1.97
31603121--31603289	51	3.3	51	78	3	196	31	15	26	26	1.96
31603065--31603302	51	4.7	51	73	6	185	31	16	25	26	1.96
31608439--31608480	22	1.9	22	95	0	75	30	2	0	66	1.04
31608439--31608494	22	2.5	22	85	2	67	32	1	5	60	1.29
31608781--31608919	48	3.0	48	79	3	149	44	33	1	20	1.60
31608754--31608919	23	7.1	23	73	6	100	45	34	1	19	1.58
31608781--31608918	25	5.9	23	74	8	98	44	33	1	20	1.60
31611730--31611771	20	2.2	19	87	12	59	16	21	4	57	1.58
31613913--31613980	21	3.2	21	70	0	64	45	17	22	14	1.85
31613857--31613985	42	3.1	42	80	2	125	44	16	23	15	1.85
31618634--31618803	25	6.8	25	76	6	96	25	24	19	30	1.98
31618970--31619022	21	2.5	20	76	8	52	50	11	1	35	1.49
31619307--31619336	11	2.6	11	94	5	51	60	0	3	36	1.14
31623506--31623551	23	2.0	23	83	8	58	43	0	26	30	1.55
31623680--31623812	69	1.9	70	90	1	214	32	14	16	36	1.89
31626242--31626654	47	8.7	47	95	1	709	32	7	30	29	1.86
31629676--31629713	20	1.9	20	94	0	67	68	0	7	23	1.16
31663688--31663743	29	1.9	29	82	7	69	53	16	10	19	1.71
31677401--31677654	124	2.0	124	99	0	499	38	14	9	36	1.79
31679258--31679300	18	2.5	17	82	10	52	39	2	2	55	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31684438--31684548	41	2.7	41	91	0	177	17	22	28	31	1.96
31684987--31685026	7	5.9	7	82	5	55	15	2	52	30	1.55
31685083--31685114	7	4.6	7	92	0	55	12	0	53	34	1.39
31685083--31685122	21	1.9	21	84	0	53	17	0	50	32	1.47
31685717--31685770	27	2.0	27	96	0	99	55	3	20	20	1.58
31688872--31688966	43	2.2	43	90	0	145	33	11	9	45	1.73
31689237--31689399	43	3.8	43	86	6	222	23	15	32	28	1.95
31692213--31692268	26	2.0	29	86	10	82	46	1	0	51	1.11
31693319--31693352	16	2.1	16	100	0	68	17	11	5	64	1.45
31702309--31702367	29	2.0	29	100	0	118	33	13	15	37	1.86
31706363--31706412	25	2.0	26	88	4	75	12	12	12	64	1.51
31706367--31706422	25	2.2	25	80	0	67	14	10	12	62	1.55
31709211--31709243	17	1.9	17	93	0	57	87	6	6	0	0.65
31719202--31719431	113	2.0	113	97	0	433	37	14	12	35	1.84
31720086--31720373	56	5.1	57	79	4	255	42	15	12	30	1.83
31720094--31720373	113	2.5	114	81	2	307	41	15	12	30	1.83
31724362--31724546	79	2.3	81	83	7	227	24	22	27	24	2.00
31724363--31724546	40	4.6	40	82	9	207	25	22	27	24	2.00
31724363--31724579	79	2.7	79	80	7	192	26	22	27	23	1.99
31731416--31731826	47	8.7	47	97	0	750	32	8	30	29	1.86
31731945--31732023	37	2.1	37	90	0	122	24	18	31	25	1.98
31735165--31735209	22	2.0	22	87	8	65	11	11	11	66	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31735165--31735200	11	3.4	11	92	3	56	11	8	11	69	1.37
31739888--31739930	20	2.2	19	87	4	59	58	4	16	20	1.56
31740378--31740407	16	1.9	16	93	6	53	30	0	20	50	1.49
31746657--31746712	21	2.7	21	85	0	76	28	17	19	33	1.95
31771515--31771807	47	6.1	47	97	0	514	29	29	8	32	1.86
31776904--31776942	13	3.1	13	85	3	53	30	28	28	12	1.93
31778170--31778303	41	3.4	39	73	9	103	32	24	16	26	1.96
31778463--31778509	24	2.0	24	84	16	62	51	14	0	34	1.43
31785482--31785676	42	4.8	41	85	6	236	34	3	0	62	1.11
31785482--31785676	82	2.4	82	86	5	252	34	3	0	62	1.11
31786389--31786426	19	2.0	20	84	5	51	44	18	0	36	1.50
31793605--31793644	20	2.0	20	90	0	62	30	2	0	67	1.04
31797906--31797951	24	1.9	24	86	0	65	45	17	26	10	1.81
31806061--31806876	44	18.8	43	74	13	480	30	20	22	26	1.98
31806061--31806832	89	8.9	85	69	13	364	29	20	23	26	1.98
31805979--31806963	217	4.5	217	92	2	1523	29	20	22	27	1.98
31806278--31806832	261	2.1	262	78	11	577	29	20	23	26	1.99
31806801--31806885	44	2.0	43	88	2	125	34	21	18	25	1.96
31808319--31808365	23	2.0	23	100	0	94	21	17	4	57	1.56
31808361--31808422	26	2.2	28	81	15	76	19	4	1	74	1.09
31808889--31808959	35	2.0	35	100	0	142	14	5	16	63	1.48
31808994--31809026	15	2.2	15	94	0	57	24	0	12	63	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31810488--31810529	2	21.0	2	100	0	84	0	50	0	50	1.00
31814427--31814499	29	2.7	27	75	14	71	52	5	2	39	1.39
31816646--31816788	11	13.8	11	75	12	97	54	0	2	42	1.15
31816637--31816813	41	4.2	41	88	7	241	56	0	2	40	1.18
31816667--31816786	52	2.3	51	78	16	129	56	0	3	40	1.16
31816637--31816794	30	5.2	30	72	14	110	56	0	3	39	1.20
31818544--31818641	49	2.0	49	97	0	187	41	16	19	22	1.90
31819413--31819448	19	1.9	18	88	5	54	63	22	11	2	1.39
31825855--31825896	20	2.0	21	86	13	61	45	16	7	30	1.74
31826960--31827372	30	13.8	30	83	2	517	30	9	17	42	1.81
31834645--31834761	49	2.4	49	95	0	207	36	18	23	21	1.95
31834672--31834855	49	3.8	49	80	7	160	38	17	24	19	1.93
31836355--31836393	21	1.9	19	85	10	51	46	23	0	30	1.53
31838523--31838565	19	2.2	20	84	12	63	32	18	0	48	1.48
31839324--31839367	22	1.9	24	90	9	74	25	20	0	54	1.45
31839692--31839722	11	2.9	11	95	4	55	0	25	0	74	0.82
31840065--31840126	31	2.0	31	81	6	72	41	11	0	46	1.39
31840045--31840308	130	2.0	128	79	10	275	37	9	2	50	1.49
31840833--31840875	21	2.0	21	90	0	68	39	18	0	41	1.51
31842853--31842890	19	2.1	19	95	5	69	55	5	0	39	1.23
31845896--31846037	71	2.0	71	91	0	230	28	18	18	35	1.94
31848753--31848836	30	2.7	30	80	12	98	63	0	3	33	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31848772--31848831	11	5.6	11	74	25	58	58	0	3	38	1.15
31848771--31848836	30	2.2	31	94	5	118	62	0	3	34	1.11
31850834--31850867	15	2.2	16	89	5	52	64	0	2	32	1.08
31864336--31864373	16	2.4	16	90	0	58	47	2	7	42	1.46
31864307--31864362	22	2.5	23	82	2	69	53	1	1	42	1.21
31864366--31864491	59	2.1	59	98	0	243	41	5	8	44	1.59
31864557--31864602	24	1.9	24	86	8	67	63	2	0	34	1.07
31865900--31865946	14	3.7	12	83	13	58	70	6	0	23	1.10
31867254--31867579	90	3.6	90	86	0	456	26	7	14	51	1.68
31876885--31876925	20	2.0	20	95	0	73	43	4	36	14	1.67
31896702--31896879	27	6.6	27	84	3	205	29	28	15	26	1.96
31896723--31896878	82	1.9	81	88	3	233	29	28	15	26	1.96
31904884--31904997	43	2.6	43	73	15	117	42	3	6	47	1.45
31906928--31907047	44	2.8	44	82	13	142	29	28	20	22	1.98
31906928--31907058	43	3.0	42	82	12	158	29	28	19	23	1.98
31912398--31912437	20	2.0	21	95	5	73	77	0	17	5	0.94
31912656--31912731	38	2.0	38	100	0	152	47	34	10	7	1.67
31918110--31918151	17	2.5	17	84	3	59	30	0	2	66	1.04
31920631--31920662	16	1.9	17	93	6	57	78	0	0	21	0.76
31921147--31921200	19	2.8	19	94	0	99	37	16	9	37	1.81
31921124--31921200	38	1.9	40	87	10	113	38	16	7	36	1.78
31921711--31922216	44	11.6	44	73	11	305	26	22	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31921751--31921952	45	4.7	43	79	7	142	25	25	21	27	1.99
31921699--31922231	217	2.4	218	87	2	725	25	23	21	30	1.99
31922419--31922528	50	2.2	50	81	0	130	29	24	20	25	1.99
31922582--31922747	44	3.8	44	91	3	255	28	26	19	25	1.99
31922758--31923324	88	6.4	88	89	1	823	19	22	27	29	1.98
31922873--31923011	44	3.2	43	62	11	102	23	21	26	28	1.99
31924644--31924676	14	2.3	15	89	5	50	27	33	12	27	1.92
31925500--31925560	26	2.3	26	83	10	72	59	4	13	22	1.53
31929793--31929825	15	2.1	16	94	5	59	60	0	9	30	1.27
31930096--31930149	19	2.8	19	91	0	90	37	14	9	38	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203