genome.fa.s17.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  177  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56298233--56298264	14	2.3	14	94	0	55	84	0	12	3	0.74
56315631--56315663	12	2.8	12	90	0	57	45	6	18	30	1.73
56317876--56317912	19	1.9	19	100	0	74	48	0	24	27	1.51
56320165--56320194	6	5.0	6	91	0	51	36	13	33	16	1.88
56330548--56330587	20	2.0	20	95	0	71	27	10	10	52	1.66
56349560--56349615	28	1.9	30	82	7	71	32	1	21	44	1.63
56350115--56350213	37	2.6	37	83	1	117	16	13	30	40	1.86
56350165--56350346	75	2.4	76	79	4	181	14	16	30	37	1.89
56350279--56350365	38	2.3	38	83	0	120	18	20	28	32	1.96
56350367--56350473	41	2.6	41	77	0	106	15	17	28	38	1.91
56357565--56357648	41	2.0	41	88	0	123	20	25	22	32	1.98
56357576--56357687	41	2.7	41	83	0	125	20	23	22	33	1.97
56363477--56363571	41	2.3	41	81	0	109	22	22	22	33	1.97
56363498--56363597	37	2.5	40	80	6	107	23	18	23	36	1.95
56368396--56368452	21	2.7	21	81	5	62	24	24	38	12	1.90
56372250--56372303	24	2.2	24	80	6	65	12	14	0	72	1.13
56372588--56372633	20	2.2	21	85	11	60	19	2	4	73	1.10
56372918--56373008	29	3.3	29	65	22	77	29	10	8	50	1.68
56372898--56373007	54	2.0	54	98	0	211	29	10	10	49	1.72
56387241--56387366	43	3.0	42	79	4	110	27	26	16	29	1.97
56400335--56400387	24	2.2	24	83	6	63	37	13	0	49	1.42
56405116--56405221	40	2.6	41	86	5	137	72	7	11	8	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56405173--56405206	13	2.8	12	86	8	50	76	8	2	11	1.12
56407422--56407704	44	6.2	44	73	13	205	33	17	20	27	1.95
56407829--56408554	100	7.2	100	80	5	766	34	23	19	23	1.97
56407826--56408586	201	3.8	201	83	4	881	33	23	18	23	1.97
56407884--56408570	50	13.7	48	69	12	276	34	23	18	23	1.96
56412375--56412493	43	2.8	43	83	5	125	27	21	20	30	1.98
56412932--56413000	21	3.3	21	89	0	102	1	43	20	34	1.61
56415033--56415283	9	29.8	9	72	12	158	31	3	19	46	1.67
56415022--56415330	25	12.2	25	76	6	216	31	3	18	47	1.64
56415144--56415241	16	6.0	16	79	11	101	31	2	18	47	1.60
56415144--56415258	41	2.8	40	89	5	160	31	1	18	48	1.58
56415218--56415388	93	1.8	92	86	7	247	29	2	15	52	1.57
56415600--56415632	15	2.2	15	94	0	57	54	3	3	39	1.31
56416810--56416888	39	2.0	39	87	2	113	35	5	43	16	1.70
56416841--56416893	23	2.3	23	83	9	63	35	3	41	18	1.69
56418052--56418852	259	3.0	266	91	2	1357	28	18	19	32	1.96
56418826--56419066	113	2.1	113	80	5	261	29	20	21	28	1.98
56418905--56419196	113	2.6	113	79	4	311	30	18	22	28	1.97
56425965--56426044	38	2.1	38	86	4	108	36	20	17	26	1.94
56431683--56431860	27	6.6	27	84	3	205	29	28	15	26	1.96
56431704--56431859	82	1.9	81	88	3	233	29	28	15	26	1.96
56439218--56439341	66	1.9	66	88	3	187	28	20	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56439478--56439549	36	2.0	36	97	0	135	26	19	20	33	1.97
56442156--56442193	16	2.5	15	87	12	51	39	0	2	57	1.12
56442204--56442320	60	1.9	61	85	1	164	39	4	14	41	1.65
56443549--56443587	18	2.2	18	86	13	55	28	0	0	71	0.86
56443778--56443823	21	2.2	20	85	11	58	39	4	4	52	1.41
56444194--56444221	6	4.7	6	100	0	56	85	0	0	14	0.59
56467820--56467869	21	2.4	21	80	6	57	32	14	28	26	1.94
56471059--56471084	13	2.0	13	100	0	52	15	30	30	23	1.95
56471898--56472020	40	3.0	40	91	1	192	33	16	29	21	1.95
56471898--56471961	21	3.1	21	65	13	60	37	17	25	20	1.93
56471881--56472016	40	3.4	40	88	1	191	32	15	30	21	1.94
56472136--56472161	13	2.0	13	100	0	52	15	30	30	23	1.95
56472975--56473038	21	3.1	21	65	13	60	37	17	25	20	1.93
56472975--56473132	40	3.9	40	91	0	244	32	15	30	21	1.95
56472999--56473104	21	5.2	21	65	13	69	30	16	33	20	1.94
56472975--56473118	21	7.1	20	63	19	57	33	15	29	21	1.95
56481401--56481455	26	2.1	26	96	0	101	30	23	12	32	1.92
56485902--56485956	22	2.5	22	100	0	110	27	25	21	25	2.00
56495654--56495790	38	3.6	38	84	2	123	39	25	17	17	1.91
56515827--56515894	30	2.2	31	84	2	84	47	7	19	26	1.75
56518013--56518037	13	1.9	13	100	0	50	40	12	16	32	1.84
56518325--56518371	22	2.1	22	88	0	67	48	27	8	14	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56518539--56518612	37	2.0	38	84	7	98	33	10	22	32	1.89
56521525--56521572	25	1.9	25	83	8	62	25	22	20	31	1.98
56521478--56521587	50	2.2	49	82	4	132	23	21	21	32	1.98
56521525--56521592	25	2.7	25	74	17	61	26	22	20	30	1.98
56534692--56534769	34	2.3	32	80	18	88	60	0	0	39	0.97
56534760--56534787	9	3.1	9	100	0	56	35	0	0	64	0.94
56535502--56535551	25	2.0	25	88	0	73	4	36	6	54	1.44
56535502--56535561	25	2.5	24	79	12	70	3	36	5	55	1.38
56535771--56535798	8	3.5	8	100	0	56	25	0	39	35	1.56
56538473--56538529	30	1.9	30	92	0	96	42	8	15	33	1.78
56539924--56539981	29	2.0	30	83	10	75	32	12	12	43	1.79
56549615--56549647	14	2.3	15	89	5	50	30	0	0	69	0.88
56550599--56550644	22	2.1	22	100	0	92	13	13	17	56	1.67
56550668--56550723	26	2.2	26	90	0	85	23	8	7	60	1.51
56552765--56552835	34	2.1	34	100	0	142	42	14	12	30	1.82
56554081--56554109	14	2.0	15	93	6	51	75	0	0	24	0.80
56554481--56555214	376	1.9	379	82	6	898	37	10	7	44	1.66
56557176--56557214	20	2.0	20	90	5	62	30	23	2	43	1.67
56562211--56562284	13	5.8	13	73	13	73	77	8	2	12	1.09
56562199--56562284	26	3.4	25	81	9	95	79	6	2	11	1.02
56562297--56562339	13	3.4	13	81	15	54	79	0	18	2	0.85
56562466--56562501	16	2.2	16	100	0	72	16	13	25	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56564587--56564991	44	9.2	44	92	0	650	27	21	24	27	1.99
56565440--56565481	17	2.5	17	76	3	50	45	35	4	14	1.66
56566504--56566539	16	2.2	16	90	0	54	22	2	5	69	1.22
56566636--56566683	3	15.3	3	81	12	53	31	4	2	62	1.26
56574701--56574742	20	2.1	21	86	8	61	35	9	4	50	1.56
56585821--56586088	40	6.7	40	97	0	482	22	27	19	30	1.98
56592553--56592721	27	6.2	27	84	4	196	30	26	15	27	1.96
56592565--56592720	82	1.9	81	88	3	233	29	28	15	26	1.96
56598967--56598991	11	2.3	11	100	0	50	24	0	0	76	0.80
56598970--56599059	18	5.6	18	64	24	56	41	1	0	57	1.06
56598969--56599007	19	2.1	19	85	0	51	38	0	0	61	0.96
56598979--56599059	30	2.6	31	92	5	128	41	1	0	56	1.07
56598999--56599059	15	3.6	18	72	19	67	42	1	0	55	1.09
56598988--56599038	11	4.9	11	73	22	56	43	1	0	54	1.11
56622176--56622297	42	2.9	42	78	9	131	22	14	28	33	1.94
56629828--56629872	21	2.3	19	80	7	54	31	0	17	51	1.46
56629324--56630236	457	2.0	459	94	1	1598	35	5	21	38	1.77
56637164--56637206	6	6.8	6	91	2	59	53	2	27	16	1.55
56637175--56637207	7	5.0	7	96	3	52	54	0	30	15	1.41
56644190--56644337	26	5.6	26	86	1	170	24	25	12	38	1.90
56644190--56644339	52	2.8	53	88	2	212	24	25	12	38	1.89
56644190--56644339	27	5.7	26	86	2	176	24	25	12	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56644190--56644339	54	2.8	52	87	4	203	24	25	12	38	1.89
56650881--56650918	12	3.2	12	78	14	51	63	13	10	13	1.53
56657227--56657259	17	1.9	17	93	0	57	66	9	3	21	1.33
56658782--56658818	18	2.0	19	85	15	51	56	8	0	35	1.29
56659624--56659697	20	3.6	20	82	7	94	27	20	21	31	1.98
56664078--56664130	19	2.7	19	80	11	54	24	3	0	71	1.02
56668839--56668932	47	2.0	47	97	0	179	31	10	9	47	1.70
56669120--56669155	18	1.9	19	88	5	56	5	19	2	72	1.17
56673598--56673784	51	3.7	51	72	9	159	26	16	25	31	1.96
56673795--56673882	45	2.0	45	95	0	158	25	18	23	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203