genome.fa.s17.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  111  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35138749--35138801	18	2.9	18	86	8	63	18	3	1	75	1.05
35139417--35139535	62	1.9	62	86	5	170	36	13	13	36	1.84
35151268--35151354	44	2.0	44	97	0	165	25	21	31	21	1.98
35155105--35155135	15	2.1	15	93	0	53	19	32	0	48	1.49
35159855--35159906	24	2.2	24	85	0	68	53	9	3	32	1.51
35161626--35161781	81	1.9	81	83	8	201	50	7	3	38	1.50
35167128--35167376	124	2.0	123	96	0	462	20	19	18	41	1.90
35177380--35177524	73	2.0	73	91	0	236	41	17	5	35	1.73
35177577--35177648	13	5.5	13	73	15	58	40	16	2	40	1.63
35177718--35177746	12	2.4	12	100	0	58	37	10	6	44	1.65
35178039--35178191	45	3.4	45	82	4	159	22	21	16	39	1.92
35178073--35178243	45	3.8	45	81	5	141	23	22	14	40	1.90
35179757--35179806	26	2.0	27	88	11	79	44	6	4	46	1.47
35180148--35180233	23	3.6	23	70	21	59	40	1	3	54	1.25
35180333--35180408	39	2.0	38	85	12	102	44	1	1	52	1.17
35201922--35201964	18	2.5	17	79	20	54	32	11	16	39	1.84
35202007--35202045	16	2.5	16	87	4	53	38	15	7	38	1.76
35206490--35206529	21	1.9	21	100	0	80	30	15	17	37	1.90
35210796--35210838	17	2.5	17	82	14	52	62	4	0	32	1.15
35210874--35210909	17	2.1	18	89	5	56	44	0	0	55	0.99
35211173--35211230	21	2.7	22	84	5	66	24	0	6	68	1.13
35211182--35211252	22	3.3	22	77	15	67	22	1	9	66	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35218269--35218627	91	3.9	91	93	0	556	33	24	16	25	1.95
35223335--35223383	22	2.1	24	81	7	57	57	18	10	14	1.65
35229090--35229384	51	5.8	51	80	5	312	29	15	24	29	1.96
35229099--35229181	26	3.2	26	65	21	66	28	13	25	32	1.93
35229095--35229389	102	2.9	102	89	1	441	29	15	24	29	1.96
35230521--35230561	13	3.2	12	83	10	55	24	2	2	70	1.11
35236607--35236654	17	2.6	18	83	12	62	10	0	45	43	1.38
35236732--35236850	52	2.2	52	92	2	193	36	14	23	26	1.93
35236813--35236922	37	3.0	37	89	2	170	35	15	23	25	1.94
35238692--35238743	14	4.2	13	76	14	56	65	1	1	30	1.14
35238724--35238765	20	2.2	20	86	4	59	59	0	4	35	1.19
35243551--35243598	17	2.9	17	90	6	73	33	0	12	54	1.38
35243955--35244202	123	2.0	123	100	0	496	42	12	10	34	1.78
35258451--35258500	26	1.9	26	91	0	82	48	36	4	12	1.59
35261521--35261553	12	2.8	12	90	4	50	39	3	0	57	1.14
35262245--35262283	12	3.2	12	82	7	51	66	0	33	0	0.92
35262248--35262285	19	2.1	19	90	5	60	63	0	36	0	0.95
35264615--35264823	115	1.9	111	86	6	298	44	11	17	26	1.83
35264853--35264973	57	2.1	57	98	0	233	32	9	9	48	1.68
35265699--35265740	19	2.2	19	86	0	57	52	14	4	28	1.62
35266752--35266951	108	1.9	106	88	2	301	37	19	15	28	1.92
35267620--35267656	17	2.1	18	90	5	58	45	5	5	43	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35274223--35274426	108	1.9	106	87	4	302	36	20	16	26	1.94
35275206--35275257	3	17.0	3	76	4	50	63	0	5	30	1.18
35275206--35275269	15	4.4	15	76	13	62	62	1	6	29	1.29
35278480--35278535	15	3.9	14	76	23	62	30	12	0	57	1.36
35278480--35278516	14	2.6	14	91	4	56	27	13	0	59	1.35
35278676--35278705	15	1.9	16	93	6	53	20	0	0	80	0.72
35278769--35278802	3	11.3	3	100	0	68	35	0	0	64	0.94
35278920--35278964	21	2.1	22	83	4	56	15	2	11	71	1.24
35279494--35279529	19	1.9	19	94	5	65	25	8	5	61	1.46
35297106--35297164	10	6.0	10	75	16	52	50	5	0	44	1.24
35297077--35297140	8	7.9	8	75	13	51	54	1	0	43	1.09
35297109--35297170	30	2.0	31	87	3	90	51	4	0	43	1.23
35297199--35297280	25	3.4	25	79	6	105	45	0	0	54	0.99
35299106--35299156	23	2.2	23	89	0	75	43	21	7	27	1.80
35301422--35301598	48	3.5	48	79	14	221	29	19	26	24	1.99
35301422--35301753	104	3.2	104	89	4	464	28	18	28	24	1.98
35301422--35301857	50	8.6	50	77	10	325	28	18	27	24	1.98
35301422--35301808	104	3.8	100	87	5	388	28	19	28	24	1.98
35303335--35303385	23	2.2	23	92	0	84	41	21	9	27	1.84
35305693--35305732	16	2.5	16	87	0	53	42	5	2	50	1.37
35305706--35305766	22	2.8	22	84	0	77	47	0	1	50	1.10
35308151--35308322	37	4.5	37	81	5	155	32	25	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35316388--35316426	17	2.4	16	84	16	53	61	0	7	30	1.24
35319786--35320060	141	2.0	141	86	4	394	28	15	33	22	1.95
35325595--35325653	26	2.2	28	84	6	77	49	0	1	49	1.11
35325611--35325653	14	3.1	14	80	10	52	44	0	2	53	1.13
35332038--35332089	24	2.2	24	85	0	68	50	7	3	38	1.50
35336426--35336477	24	2.2	24	89	0	77	50	9	3	36	1.54
35340926--35341085	85	1.9	83	84	3	205	35	12	5	47	1.63
35343144--35343531	164	2.4	164	92	0	625	37	7	26	28	1.83
35348498--35348525	6	4.7	6	100	0	56	17	32	0	50	1.47
35352342--35352451	45	2.4	45	89	0	157	42	20	18	19	1.89
35354320--35354346	11	2.5	11	100	0	54	59	7	0	33	1.25
35356758--35356801	3	14.7	3	100	0	88	34	0	0	65	0.93
35359526--35359572	24	1.9	24	86	4	67	36	0	38	25	1.56
35359938--35360008	35	2.0	35	100	0	142	28	11	14	46	1.78
35369214--35369325	27	4.1	27	90	0	161	41	21	18	18	1.91
35369235--35369339	54	1.9	54	90	0	165	38	20	20	20	1.94
35372298--35372356	26	2.3	26	96	0	109	32	23	5	38	1.77
35375928--35375966	20	2.0	20	89	0	60	25	25	5	43	1.75
35375927--35375972	20	2.2	20	80	3	56	23	32	6	36	1.81
35379767--35380001	100	2.3	103	85	4	305	22	29	20	27	1.98
35379756--35380001	50	4.8	51	84	4	273	22	29	20	27	1.98
35381115--35381151	13	2.9	13	80	19	51	29	0	5	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35381417--35381607	51	3.8	50	83	4	215	25	17	28	28	1.98
35384492--35384606	50	2.3	50	83	0	140	32	17	26	24	1.97
35384492--35384578	25	3.5	25	91	0	138	29	17	29	22	1.97
35385670--35385712	20	2.2	20	82	0	50	62	9	11	16	1.53
35386954--35386988	18	1.9	18	88	0	52	22	8	40	28	1.84
35402389--35402439	24	2.1	24	92	0	84	31	1	17	49	1.58
35409589--35409628	16	2.4	16	83	4	53	62	0	7	30	1.23
35410079--35410646	296	1.9	293	81	6	682	40	10	13	35	1.79
35411710--35411736	3	9.0	3	100	0	54	66	0	0	33	0.92
35412653--35412712	19	2.9	19	82	9	66	40	16	6	36	1.75
35412679--35412721	19	2.4	19	84	7	54	41	11	11	34	1.78
35413268--35413375	44	2.5	44	77	4	121	32	20	17	29	1.96
35413369--35413596	44	5.2	44	75	6	165	28	23	17	29	1.97
35413393--35413685	88	3.3	87	70	7	259	26	24	19	29	1.98
35413387--35413752	176	2.1	176	90	2	565	26	25	17	30	1.98
35413473--35413741	88	3.1	88	66	10	217	26	25	18	30	1.98
35415106--35415138	14	2.3	15	89	5	50	6	15	0	78	0.93
35415121--35415158	20	1.9	20	88	0	58	15	5	5	73	1.19
35421069--35421113	22	2.0	22	86	4	63	37	17	6	37	1.76
35421092--35421128	19	1.9	19	100	0	74	35	16	10	37	1.83
35421095--35421136	19	2.3	19	88	8	61	38	11	14	35	1.83
35424799--35424837	19	2.1	19	85	0	51	28	2	5	64	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35424844--35424902	31	1.9	31	100	0	118	27	3	5	64	1.30
35424849--35424909	17	3.8	17	68	24	51	27	3	3	65	1.24
35424935--35424982	21	2.2	21	85	3	60	43	2	4	50	1.33
35424943--35424983	21	2.0	21	95	0	73	41	0	7	51	1.30
35424950--35424993	21	2.1	21	82	0	52	52	0	9	38	1.33
35435235--35435331	51	1.9	51	82	0	122	35	14	27	22	1.93
35435283--35435434	58	2.6	58	80	0	178	38	13	27	19	1.90
35435484--35435545	32	1.9	32	93	0	106	41	17	24	16	1.89
35449620--35449649	12	2.6	11	90	10	51	16	3	0	80	0.85
35451382--35451435	21	2.5	22	82	8	76	29	9	31	29	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203