genome.fa.s17.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  130  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41230798--41230822	4	6.2	4	100	0	50	76	0	0	24	0.80
41232288--41232323	18	1.9	19	88	5	56	22	5	11	61	1.50
41232663--41232707	22	2.0	22	95	0	81	31	15	24	28	1.96
41232671--41232712	22	1.9	22	85	0	57	35	16	23	23	1.95
41233578--41233610	16	2.1	16	94	5	59	18	6	6	69	1.30
41235967--41235993	14	1.9	14	100	0	54	22	11	14	51	1.73
41237793--41237830	19	2.0	19	85	10	51	50	7	7	34	1.61
41241929--41241961	16	2.1	16	94	5	59	18	6	6	69	1.30
41243572--41243642	37	2.0	35	81	15	83	39	4	2	53	1.35
41244589--41244719	41	3.2	41	85	2	165	22	29	19	29	1.98
41244623--41244742	41	2.9	41	85	4	127	25	28	18	27	1.98
41245331--41245411	40	2.0	40	100	0	162	40	7	4	46	1.53
41246675--41246712	11	3.5	11	82	7	51	44	0	0	55	0.99
41249192--41249243	25	2.0	26	85	3	70	40	9	11	38	1.74
41252998--41253061	30	2.2	29	83	10	78	28	17	4	50	1.66
41261099--41261147	11	4.5	10	82	10	53	55	4	0	40	1.19
41261106--41261144	20	2.0	20	85	10	53	56	2	0	41	1.13
41261166--41261196	15	2.1	14	94	5	53	54	3	0	41	1.16
41275023--41275971	44	21.5	44	76	5	785	28	15	25	30	1.96
41275023--41275919	133	6.8	133	90	1	1284	28	16	25	30	1.96
41277696--41277734	20	2.1	19	85	9	53	25	2	5	66	1.25
41278120--41278165	17	2.6	18	86	6	58	13	8	6	71	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41281421--41281471	23	2.2	23	85	0	66	41	5	1	50	1.37
41281404--41281450	14	3.1	15	84	9	51	42	2	2	53	1.25
41291577--41291622	18	2.6	18	96	0	83	26	15	34	23	1.94
41296159--41296348	97	2.0	96	83	3	238	26	17	9	46	1.78
41296821--41297553	44	17.1	44	69	9	422	30	21	21	26	1.98
41296768--41297079	131	2.4	129	87	3	446	31	19	21	27	1.98
41296923--41297199	85	3.3	85	94	0	473	27	21	20	30	1.98
41297008--41297548	128	4.2	126	87	2	525	30	21	21	26	1.99
41296923--41297249	85	3.8	82	83	7	375	28	21	21	28	1.99
41296923--41297249	170	1.9	170	86	2	469	28	21	21	28	1.99
41297096--41297577	128	3.8	128	92	0	795	30	22	21	25	1.99
41298958--41298986	6	4.8	6	100	0	58	31	0	34	34	1.58
41299386--41299425	20	2.0	21	85	5	55	57	0	5	37	1.21
41299513--41299565	17	3.0	17	83	5	70	58	0	1	39	1.09
41299488--41299565	36	2.2	35	84	13	97	57	1	1	39	1.15
41299538--41299674	72	1.9	72	90	3	222	48	2	3	44	1.35
41299673--41299712	20	2.0	20	90	0	62	40	0	0	60	0.97
41299781--41299820	8	4.8	8	82	11	53	50	0	0	50	1.00
41302200--41302243	6	7.7	6	85	10	65	34	2	15	47	1.58
41302200--41302243	16	2.6	16	89	7	61	34	2	15	47	1.58
41307991--41308084	23	4.1	23	85	0	134	22	25	4	47	1.69
41312498--41312591	23	4.1	23	85	0	134	22	25	4	47	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41316977--41317067	17	5.2	19	69	29	69	29	1	13	56	1.45
41317044--41317261	76	2.8	77	74	9	201	34	4	10	50	1.57
41317243--41317273	3	10.3	3	92	0	53	29	0	3	67	1.06
41320825--41320862	18	2.1	18	90	0	58	26	28	23	21	1.99
41322480--41323684	159	7.6	159	93	2	1941	28	10	7	52	1.64
41323627--41323736	51	2.2	48	82	10	132	24	9	3	62	1.41
41323670--41323736	16	4.2	15	79	9	71	20	7	2	68	1.28
41323670--41323736	17	4.1	16	74	14	66	20	7	2	68	1.28
41323918--41323954	18	2.0	19	89	5	58	67	5	0	27	1.12
41324071--41324099	13	2.2	13	100	0	58	0	37	0	62	0.96
41324132--41324203	27	2.7	27	84	0	99	8	34	33	23	1.85
41325418--41325548	69	1.9	69	82	0	163	36	16	25	22	1.94
41327919--41327976	26	2.3	25	85	8	82	44	3	17	34	1.65
41329484--41329532	24	2.0	24	100	0	98	26	16	40	16	1.89
41331425--41331465	21	1.9	22	85	5	57	26	26	19	26	1.99
41331423--41331675	106	2.3	108	87	3	339	26	20	14	38	1.91
41353884--41353933	20	2.5	20	83	3	64	38	4	2	56	1.30
41353884--41353926	19	2.3	19	84	11	54	39	2	0	58	1.11
41363819--41363928	34	3.2	34	78	10	118	30	13	15	40	1.86
41364005--41364157	45	3.4	44	80	8	173	26	16	14	42	1.87
41364082--41364153	23	3.1	23	66	18	58	22	15	15	47	1.82
41366920--41366962	21	2.0	21	100	0	86	58	4	9	27	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41370171--41370473	40	7.6	40	89	2	396	27	27	20	24	1.99
41384733--41384786	19	2.8	19	97	0	99	37	11	14	37	1.82
41385353--41385404	25	2.1	25	85	7	70	32	3	5	57	1.40
41385970--41386009	19	2.0	20	85	4	55	32	5	10	52	1.56
41386250--41386444	98	2.0	98	95	0	354	28	9	24	37	1.87
41390141--41390180	20	2.0	20	90	0	62	72	0	22	5	1.04
41391379--41391896	132	3.9	132	96	0	930	30	20	24	24	1.99
41391391--41391838	44	10.2	44	63	8	151	30	20	24	25	1.98
41392049--41392180	19	6.8	19	89	3	210	37	10	14	37	1.81
41392049--41392187	59	2.4	57	88	6	210	38	10	14	37	1.80
41393268--41393462	98	2.0	98	96	0	363	28	10	24	36	1.88
41413457--41413500	8	5.4	8	97	2	79	38	11	25	25	1.89
41419948--41419997	26	1.9	26	95	0	91	16	20	34	30	1.94
41419907--41420038	67	2.0	68	86	4	187	23	18	28	28	1.98
41419977--41420122	42	3.5	42	82	6	170	21	18	26	34	1.96
41425915--41425963	20	2.5	20	83	12	66	22	26	0	51	1.49
41427568--41427795	42	5.4	42	74	5	156	21	21	19	37	1.94
41429253--41429298	21	2.2	20	81	7	56	69	2	2	26	1.11
41435198--41435302	44	2.4	44	91	3	167	32	23	13	30	1.93
41438487--41438535	24	1.9	27	84	12	68	22	20	8	48	1.75
41443172--41443346	92	1.9	91	85	3	244	21	20	32	26	1.97
41449926--41449974	25	2.0	24	84	4	62	24	30	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41453843--41453872	15	2.0	15	93	0	51	46	10	0	43	1.37
41454276--41454414	42	3.3	41	88	5	181	27	20	19	32	1.97
41454747--41454817	21	3.4	21	80	7	90	2	45	19	32	1.65
41455367--41455677	113	2.8	111	85	2	412	27	21	23	28	1.99
41455987--41456075	35	2.5	35	79	1	97	26	2	24	46	1.65
41455993--41456039	14	3.4	14	81	0	58	23	2	27	46	1.63
41465308--41465376	21	3.3	21	87	0	93	39	18	39	2	1.66
41465819--41466142	42	7.6	42	85	4	172	25	19	21	34	1.96
41465893--41466144	84	3.0	84	90	1	398	23	19	21	35	1.96
41465851--41466143	126	2.3	126	88	4	419	23	19	21	34	1.97
41469939--41469969	7	4.3	7	92	8	53	45	38	0	16	1.47
41469939--41469969	15	2.1	14	94	5	53	45	38	0	16	1.47
41470000--41470039	21	2.0	20	85	5	53	47	45	2	5	1.38
41470418--41470467	22	2.3	22	89	0	73	48	38	0	14	1.44
41470409--41470468	14	4.2	14	74	4	57	46	40	0	13	1.43
41470611--41470718	49	2.2	47	75	6	108	50	26	1	21	1.59
41470797--41471547	114	6.6	113	79	5	726	26	23	18	31	1.97
41470820--41471548	227	3.2	228	83	4	893	26	23	18	31	1.97
41470797--41471547	341	2.2	340	81	5	827	26	23	18	31	1.97
41471554--41471764	112	1.9	112	80	5	248	27	22	21	28	1.99
41476917--41476959	16	2.6	16	85	3	50	34	0	0	65	0.93
41479390--41479437	18	2.8	17	78	6	60	72	2	20	4	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41481327--41481366	21	1.9	21	85	10	55	47	2	5	45	1.38
41482864--41483052	40	4.8	39	80	3	157	29	24	15	30	1.96
41482866--41483055	80	2.4	80	83	3	222	28	25	15	30	1.96
41491378--41491418	18	2.3	18	84	12	50	24	39	19	17	1.92
41492353--41492382	12	2.5	12	100	0	60	70	13	16	0	1.18
41495474--41495525	21	2.5	21	87	0	77	28	7	32	30	1.85
41498855--41498889	16	2.2	16	90	10	54	77	0	5	17	0.96
41507573--41507611	19	2.1	18	90	4	60	38	2	0	58	1.12
41514828--41514866	12	3.2	12	88	3	51	48	0	0	51	1.00
41518766--41518804	12	3.2	12	88	3	51	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203