genome.fa.s17.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  38  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12458406--12458676	55	4.8	54	79	10	269	11	10	22	56	1.64
12466142--12466448	151	2.0	151	94	1	535	33	13	22	30	1.93
12468147--12468250	23	5.0	22	73	21	107	33	17	13	35	1.89
12468130--12468250	60	2.0	60	100	0	242	33	18	13	35	1.89
12469300--12469357	28	2.1	28	100	0	116	24	18	12	44	1.84
12469085--12469575	246	2.0	245	90	1	777	37	20	15	27	1.92
12475635--12475669	15	2.2	16	90	5	54	68	8	5	17	1.35
12475850--12475888	3	13.0	3	94	0	69	69	0	30	0	0.89
12484590--12484632	22	2.0	21	81	4	50	23	34	30	11	1.90
12485102--12485133	14	2.4	13	90	10	55	9	0	0	90	0.45
12485331--12485368	15	2.5	16	87	8	53	28	0	5	65	1.14
12485388--12485431	16	2.8	16	78	0	52	34	2	2	61	1.21
12493380--12493434	28	2.0	28	96	0	101	40	21	23	14	1.90
12497102--12497280	45	3.9	45	71	5	137	31	18	24	25	1.98
12497104--12497280	89	2.0	91	92	3	295	31	19	23	25	1.98
12497104--12497315	92	2.3	89	86	4	255	30	20	23	25	1.99
12497480--12497592	44	2.5	45	82	2	138	30	15	28	24	1.96
12499134--12499174	15	2.8	14	85	10	55	29	0	7	63	1.21
12503568--12503934	197	1.9	198	81	6	458	45	15	11	27	1.81
12507811--12507855	23	1.9	24	90	4	74	53	0	2	44	1.13
12508456--12508512	25	2.2	25	84	3	69	52	1	1	43	1.21
12512504--12512548	20	2.3	19	88	3	63	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12513604--12513652	20	2.5	20	86	3	64	38	2	2	57	1.22
12516648--12516715	34	2.0	34	100	0	136	44	5	23	26	1.76
12534934--12534974	16	2.7	15	85	7	55	48	12	7	31	1.68
12534941--12534976	16	2.2	16	95	0	63	50	11	8	30	1.67
12540065--12540107	23	1.9	23	85	4	61	58	4	6	30	1.45
12542049--12542075	9	3.0	9	100	0	54	66	0	0	33	0.92
12543014--12543051	13	2.8	14	84	15	53	31	0	2	65	1.06
12545155--12545234	29	2.7	30	78	9	83	52	12	1	33	1.47
12546282--12546314	15	2.1	17	88	11	52	18	15	12	54	1.71
12551338--12551374	3	12.3	3	100	0	74	67	0	0	32	0.91
12558216--12558256	20	2.0	20	86	9	57	73	4	7	14	1.22
12559128--12559159	13	2.5	13	94	0	55	28	0	9	62	1.26
12564878--12564908	14	2.2	14	94	0	53	58	6	6	29	1.48
12580578--12580643	26	2.6	25	81	11	71	39	1	6	53	1.35
12581788--12581833	21	2.2	21	84	7	58	43	28	6	21	1.77
12581795--12581834	21	1.9	21	90	10	64	42	25	7	25	1.80
12582063--12582125	27	2.3	28	80	2	65	30	4	1	63	1.24
12583449--12583501	24	2.2	24	86	0	70	39	3	7	49	1.49
12583466--12583511	24	1.9	24	86	8	67	41	6	4	47	1.49
12588613--12588804	50	3.8	50	81	0	213	28	21	28	21	1.99
12589372--12589500	50	2.6	50	77	1	132	28	21	26	23	1.99
12596021--12596062	14	2.8	15	85	7	50	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12607043--12607068	3	8.7	3	100	0	52	69	30	0	0	0.89
12626383--12626540	79	2.0	79	97	0	298	30	18	18	31	1.96
12642195--12642645	232	1.9	231	92	1	751	38	20	13	27	1.90
12647750--12647783	16	2.1	16	88	0	50	64	2	2	29	1.22
12648004--12648060	23	2.6	21	75	17	62	45	0	1	52	1.11
12648047--12648083	10	3.7	10	88	0	56	40	2	0	56	1.13
12650087--12650113	6	4.5	6	100	0	54	14	0	0	85	0.61
12659137--12659271	40	3.4	40	78	7	159	33	25	16	24	1.96
12659137--12659272	37	3.5	40	75	9	145	33	25	16	24	1.95
12659137--12659272	41	3.5	39	74	12	127	33	25	16	24	1.95
12660231--12660321	35	2.6	36	79	10	98	45	5	2	47	1.38
12681817--12681871	3	19.0	3	75	14	53	34	0	3	61	1.13
12681994--12682036	21	2.0	21	86	8	61	76	9	4	9	1.14
12682939--12683047	38	2.8	39	75	6	105	22	19	25	32	1.97
12684198--12684264	34	2.1	33	83	8	84	44	19	11	23	1.84
12684208--12684275	34	2.0	34	85	0	91	44	19	11	25	1.84
12686868--12686930	27	2.4	25	75	15	63	58	4	9	26	1.49
12691684--12691731	22	2.2	22	84	0	60	66	4	4	25	1.27
12694961--12695289	175	1.9	177	83	5	441	26	12	15	46	1.81
12700363--12700409	22	2.1	22	84	0	58	36	4	21	38	1.73
12700315--12700448	53	2.5	51	81	9	144	38	3	20	37	1.71
12703063--12703090	5	5.6	5	100	0	56	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12705267--12705440	95	1.8	96	84	2	242	40	14	14	29	1.87
12708434--12708488	28	2.0	27	85	3	74	20	18	10	50	1.76
12709430--12709463	18	1.9	18	88	5	52	70	2	0	26	1.01
12717365--12717401	7	5.3	7	93	0	56	62	0	0	37	0.96
12720013--12720050	6	6.3	6	93	0	67	18	31	0	50	1.47
12720018--12720058	18	2.3	18	86	0	55	21	31	0	46	1.52
12721136--12721377	130	1.9	130	87	1	360	39	21	9	30	1.84
12721379--12721404	3	8.7	3	100	0	52	69	30	0	0	0.89
12731546--12731574	9	3.2	9	100	0	58	58	0	0	41	0.98
12732227--12732266	20	2.0	20	85	0	53	22	35	15	27	1.94
12735814--12735908	47	2.0	47	93	0	163	43	21	8	27	1.81
12740601--12740631	16	1.9	16	93	0	53	83	3	12	0	0.75
12741611--12741684	32	2.3	32	85	0	103	50	13	16	20	1.78
12746493--12746520	8	3.5	8	100	0	56	89	0	0	10	0.49
12748829--12748886	26	2.2	26	96	0	107	67	5	5	22	1.31
12751524--12751566	18	2.4	19	80	11	54	55	2	2	39	1.25
12761763--12761813	18	2.8	18	74	14	59	66	5	0	27	1.14
12762580--12762623	23	2.0	23	86	8	65	36	0	2	61	1.09
12762582--12762662	29	2.8	28	83	12	92	39	0	1	59	1.05
12764257--12764313	29	2.0	29	82	0	69	45	8	10	35	1.70
12765072--12765151	36	2.2	36	80	8	83	61	7	2	28	1.36
12768467--12768506	21	2.0	20	95	5	71	30	5	0	65	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12772244--12772307	29	2.2	29	94	0	119	40	9	3	46	1.52
12774389--12774712	163	2.0	164	91	0	524	27	11	20	40	1.87
12780689--12780796	47	2.3	46	84	9	137	41	11	9	37	1.73
12788666--12789088	208	2.0	208	98	0	819	18	21	16	44	1.87
12791957--12792016	30	2.0	30	93	0	102	33	10	30	26	1.89
12793510--12793552	22	2.0	22	85	0	59	25	4	9	60	1.47
12797271--12797334	30	2.1	31	85	8	87	60	3	1	34	1.22
12800205--12800229	6	4.2	6	100	0	50	16	0	0	84	0.63
12807832--12807900	36	1.9	36	87	0	102	31	21	11	34	1.89
12809636--12809674	20	2.0	20	85	10	53	41	5	5	48	1.47
12817216--12817278	31	2.1	31	84	3	83	47	4	1	46	1.33
12817215--12817280	30	2.2	30	81	5	80	45	4	1	48	1.32
12822848--12823176	59	5.7	59	77	6	305	42	15	17	24	1.88
12822840--12823161	116	2.8	115	80	7	348	42	14	18	24	1.87
12837858--12838013	42	3.7	42	77	16	169	30	26	18	24	1.98
12842908--12842959	23	2.3	23	93	0	95	28	26	21	23	1.99
12843367--12843399	17	1.9	17	100	0	66	36	18	0	45	1.49
12848231--12848328	41	2.3	45	84	8	132	25	18	24	31	1.97
12852969--12852998	14	2.1	14	93	0	51	60	6	3	30	1.39
12864638--12864690	19	2.7	19	78	18	56	56	5	1	35	1.34
12865218--12865740	180	2.9	181	82	4	615	43	12	10	33	1.76
12869290--12869317	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12871977--12872063	21	4.1	21	80	12	106	37	24	19	18	1.94
12871977--12872063	44	2.0	41	82	10	104	37	24	19	18	1.94
12873213--12873250	14	2.4	17	87	12	55	52	0	0	47	1.00
12873212--12873275	23	2.7	24	80	9	78	46	1	0	51	1.10
12904751--12904799	20	2.4	21	77	12	57	16	8	0	75	1.03
12904770--12904842	26	2.9	25	76	13	69	13	13	1	71	1.22
12905111--12905152	10	3.8	11	85	14	52	35	0	0	64	0.94
12905111--12905160	22	2.3	22	80	16	59	36	0	0	64	0.94
12905120--12905161	11	3.7	11	84	12	50	33	0	0	66	0.92
12906140--12906211	35	2.1	35	91	0	117	41	26	11	20	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203