genome.fa.s17.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  153  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48694984--48695134	58	2.7	57	89	7	222	28	20	8	42	1.81
48694984--48695151	52	3.1	52	85	7	178	26	20	7	45	1.78
48699336--48699361	12	2.2	12	100	0	52	42	15	15	26	1.87
48707014--48707098	34	2.5	34	80	14	97	64	3	3	28	1.26
48708019--48708343	170	1.9	169	94	0	569	37	14	12	36	1.83
48717209--48717256	25	1.9	25	91	0	78	62	22	4	10	1.44
48726653--48726870	79	2.7	82	79	10	220	24	26	22	26	2.00
48726667--48726870	40	5.1	40	81	8	220	24	26	23	25	2.00
48734627--48734729	52	2.0	52	100	0	206	38	23	7	30	1.83
48734926--48735110	79	2.3	82	82	7	220	24	27	23	24	2.00
48734907--48735110	40	5.1	39	78	11	209	24	27	23	25	2.00
48745692--48745740	26	2.0	25	84	8	64	44	4	0	51	1.20
48748048--48748076	2	14.5	2	100	0	58	0	0	48	51	1.00
48750566--48750591	13	2.0	13	100	0	52	15	15	0	69	1.20
48758864--48758989	41	3.0	43	76	11	134	30	26	17	24	1.97
48759728--48759753	10	2.6	10	100	0	52	61	19	7	11	1.53
48759861--48759906	25	1.9	23	83	16	58	39	13	0	47	1.42
48763863--48763888	2	13.0	2	100	0	52	50	0	0	50	1.00
48771769--48771831	24	2.6	24	73	12	65	36	20	17	25	1.94
48779735--48779793	3	19.3	3	86	10	84	67	28	3	0	1.06
48780376--48780421	23	2.0	23	86	0	65	23	4	0	71	1.03
48780611--48780635	5	5.0	5	100	0	50	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48780675--48780735	20	2.8	22	78	14	63	37	6	0	55	1.26
48785136--48785372	41	5.3	41	66	21	145	40	5	3	49	1.45
48785152--48785390	42	5.1	51	62	25	166	39	6	3	49	1.47
48785107--48785390	92	3.1	92	100	0	568	39	6	4	49	1.49
48790596--48790766	66	2.6	65	84	4	209	40	19	27	12	1.87
48790757--48790845	21	4.2	21	85	0	124	32	17	44	4	1.69
48790748--48790836	42	2.1	42	80	0	97	34	19	41	4	1.71
48791199--48791451	43	5.9	42	76	8	215	21	17	31	29	1.96
48791174--48791432	87	3.0	86	84	2	295	22	17	31	28	1.97
48791219--48791456	87	2.8	86	87	2	325	23	17	31	27	1.97
48791199--48791451	130	2.0	129	83	3	321	21	17	31	29	1.96
48798374--48798409	7	5.1	7	96	0	63	44	2	27	25	1.68
48798319--48798453	65	2.1	65	85	2	182	34	12	22	30	1.91
48798384--48798497	44	2.6	44	94	0	192	35	14	21	28	1.93
48798433--48798603	58	3.1	57	72	13	185	35	14	23	26	1.94
48798317--48798604	109	2.7	106	82	6	312	34	14	22	29	1.93
48804645--48804708	14	4.4	14	71	24	51	56	1	0	42	1.09
48808643--48809084	125	3.5	125	92	0	713	31	17	20	29	1.96
48811163--48811215	22	2.5	21	90	6	88	18	1	33	45	1.61
48811199--48811229	7	4.6	7	92	8	55	12	0	41	45	1.42
48811248--48811287	7	5.9	7	83	16	57	52	0	0	47	1.00
48811245--48811287	12	3.3	12	78	15	50	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48811163--48811454	138	2.1	138	95	1	523	31	1	20	47	1.57
48811386--48811425	7	5.9	7	83	16	57	52	0	0	47	1.00
48811383--48811425	12	3.3	12	78	15	50	53	0	0	46	1.00
48813787--48813882	22	4.4	22	70	12	72	48	2	25	23	1.61
48813774--48813863	45	2.0	45	84	4	119	47	2	23	26	1.63
48817458--48817501	21	2.1	21	83	8	54	65	4	0	29	1.12
48826367--48827138	114	6.8	113	76	9	687	32	18	20	28	1.97
48826475--48827138	228	2.9	227	93	1	1105	31	19	20	28	1.97
48827619--48827658	15	2.7	15	92	3	64	17	0	37	45	1.49
48828036--48828071	14	2.3	17	86	13	51	55	0	2	41	1.14
48830516--48830608	17	5.9	17	71	19	67	39	4	6	49	1.48
48830509--48830626	30	3.9	30	70	12	98	36	5	7	50	1.53
48830509--48830561	13	3.8	13	77	18	52	33	7	3	54	1.46
48830557--48830595	16	2.5	16	83	4	53	46	0	7	46	1.31
48830527--48830674	61	2.4	61	82	10	178	40	4	7	47	1.53
48830775--48830824	15	3.5	15	81	15	61	62	10	0	28	1.27
48830820--48830877	21	2.8	20	79	7	71	43	15	3	37	1.64
48830799--48830954	84	1.9	84	94	1	278	46	14	2	35	1.59
48830962--48831843	9	97.1	9	72	11	568	48	15	2	33	1.59
48830980--48831703	109	6.8	109	94	3	1190	49	14	3	32	1.59
48831450--48831741	94	3.1	94	88	5	421	47	15	2	33	1.59
48831775--48831834	16	3.6	16	84	8	84	45	20	1	33	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48834971--48835054	41	2.0	41	95	0	150	27	11	26	34	1.91
48837422--48837448	12	2.2	12	100	0	54	40	18	40	0	1.51
48837882--48838174	85	3.5	84	83	5	281	26	22	19	32	1.97
48837886--48838194	127	2.4	126	86	5	390	25	22	19	31	1.98
48837886--48838194	42	7.3	42	85	4	347	25	22	19	31	1.98
48837948--48838177	85	2.7	85	87	1	336	23	21	19	34	1.96
48838787--48838897	25	4.4	25	72	8	82	26	22	18	32	1.97
48844117--48844181	32	2.0	32	100	0	130	30	20	9	40	1.83
48852551--48852585	3	11.7	3	100	0	70	68	0	0	31	0.90
48857753--48858016	50	5.3	50	73	8	259	21	19	24	34	1.97
48857706--48858024	100	3.2	100	90	1	505	21	20	23	33	1.97
48858337--48858564	44	5.2	44	67	10	160	24	26	25	24	2.00
48858403--48858540	45	3.1	45	72	4	145	21	25	25	27	1.99
48858309--48858967	87	7.5	87	84	3	795	24	24	23	28	2.00
48860995--48861025	14	2.3	14	94	5	55	0	16	0	83	0.64
48862057--48862626	285	2.0	285	97	0	1088	22	26	15	34	1.94
48871797--48871848	22	2.4	22	75	12	52	26	17	0	55	1.42
48879098--48879149	5	10.6	5	76	12	54	40	0	0	59	0.97
48879097--48879158	25	2.5	24	79	7	70	41	1	0	56	1.09
48882857--48882910	26	2.1	26	100	0	108	38	14	11	35	1.82
48885699--48885728	14	2.1	14	93	0	51	43	13	10	33	1.77
48888031--48888060	5	5.8	5	96	4	51	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48889056--48889098	20	2.2	20	87	8	61	18	11	2	67	1.32
48889507--48889543	17	2.2	17	100	0	74	51	0	0	48	1.00
48894048--48894090	21	2.0	21	95	0	77	13	30	18	37	1.90
48897968--48898007	20	2.1	19	95	4	71	35	7	10	47	1.65
48899385--48899458	32	2.5	29	87	10	98	50	18	2	28	1.61
48900859--48900919	27	2.3	27	82	0	77	49	8	4	37	1.54
48902825--48902879	25	2.2	24	78	9	58	50	3	27	18	1.63
48902865--48902904	18	2.2	18	86	8	55	70	0	27	2	1.01
48904553--48904610	29	2.0	29	93	0	98	37	13	12	36	1.82
48905326--48905372	22	2.1	23	88	4	69	27	21	8	42	1.81
48907954--48908034	30	2.8	28	83	10	99	45	2	2	49	1.28
48919727--48919765	3	13.0	3	100	0	78	66	0	0	33	0.92
48919741--48919832	34	2.6	34	84	6	103	59	3	4	32	1.33
48920936--48921001	30	2.2	30	80	0	78	10	6	39	43	1.64
48925598--48925632	18	1.9	18	88	11	54	40	11	22	25	1.88
48931754--48931780	2	13.5	2	100	0	54	48	0	0	51	1.00
48935031--48935075	20	2.2	20	88	0	63	26	13	15	44	1.83
48935976--48936133	23	7.1	22	68	5	93	34	30	4	30	1.77
48935970--48936133	45	3.6	45	86	1	213	34	30	4	30	1.77
48936002--48936113	22	5.0	23	72	4	93	35	32	4	27	1.77
48940053--48940235	79	2.3	81	84	7	232	24	22	27	25	2.00
48940054--48940237	40	4.6	40	83	9	216	23	22	28	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48940106--48940270	79	2.1	79	84	6	210	25	21	27	25	1.99
48942009--48942094	38	2.2	38	83	10	102	67	2	19	10	1.31
48946335--48946449	22	5.1	22	76	4	122	38	31	3	26	1.73
48946286--48946449	45	3.6	45	90	1	231	37	31	2	29	1.70
48946325--48946449	23	5.5	22	75	4	115	39	31	3	26	1.72
48946325--48946481	45	3.5	44	84	4	138	40	30	3	25	1.71
48948318--48948476	43	3.7	42	70	13	128	25	18	27	29	1.98
48950420--48950535	34	3.3	35	80	11	132	21	28	31	18	1.97
48953883--48953921	20	2.0	20	84	0	51	33	30	23	12	1.92
48961393--48961443	17	3.1	16	81	15	52	43	1	0	54	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203