genome.fa.s17.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  122  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38672769--38672888	9	14.2	9	75	13	112	34	0	17	47	1.54
38672773--38672888	25	4.6	25	86	0	160	34	0	18	46	1.55
38672769--38672888	50	2.4	50	90	0	186	34	0	17	47	1.54
38672769--38672915	50	2.9	49	79	7	145	31	1	17	50	1.54
38672937--38672981	12	3.8	12	84	0	63	28	2	15	53	1.54
38672937--38672988	24	2.2	24	89	6	79	26	1	17	53	1.54
38673167--38673241	29	2.6	29	97	0	141	28	2	22	46	1.65
38673135--38673244	16	7.1	16	65	15	70	30	3	22	43	1.70
38675623--38675666	22	2.0	23	86	13	65	18	9	0	72	1.10
38675997--38676648	83	7.9	83	99	0	1288	29	8	4	57	1.49
38676076--38676114	19	2.1	18	90	4	60	15	2	2	79	0.95
38676159--38676197	19	2.1	18	90	4	60	15	2	2	79	0.95
38676242--38676280	19	2.1	18	90	4	60	15	2	2	79	0.95
38676325--38676363	19	2.1	18	90	4	60	15	2	2	79	0.95
38676408--38676446	19	2.1	18	90	4	60	15	2	2	79	0.95
38676491--38676529	19	2.1	18	90	4	60	15	2	2	79	0.95
38676574--38676612	19	2.1	18	90	4	60	15	2	2	79	0.95
38677027--38677200	41	4.2	40	83	3	204	31	23	22	22	1.99
38677027--38677200	83	2.1	81	84	4	224	31	23	22	22	1.99
38678620--38678685	23	2.8	24	73	19	66	40	0	1	57	1.08
38681757--38681824	25	2.6	26	95	4	120	41	10	0	48	1.37
38681947--38682096	4	37.0	4	72	16	105	67	0	32	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38681991--38682143	43	3.7	43	77	18	171	67	0	32	0	0.91
38681948--38682121	44	4.1	45	72	21	155	67	0	31	0	0.95
38682023--38682153	29	4.8	29	70	22	97	69	0	30	0	0.89
38681947--38682156	82	2.6	80	85	8	250	67	0	31	0	0.94
38682860--38682911	21	2.4	21	93	3	86	51	0	38	9	1.35
38688542--38688572	12	2.6	12	94	0	53	61	19	0	19	1.35
38689086--38689129	22	2.0	21	86	8	61	50	0	11	38	1.39
38689130--38689187	16	3.4	16	71	17	53	43	18	0	37	1.51
38691469--38691512	21	2.2	20	88	12	63	54	9	0	36	1.32
38696654--38696696	21	2.0	21	91	8	70	76	11	11	0	1.02
38697678--38697742	23	3.0	23	80	11	82	15	18	24	41	1.89
38706995--38707035	19	2.1	20	86	4	57	31	9	2	56	1.45
38707331--38707356	13	2.0	13	100	0	52	30	23	23	23	1.99
38707529--38707577	26	1.9	25	83	4	62	36	6	0	57	1.24
38709721--38709756	18	2.0	18	89	10	56	19	8	11	61	1.54
38739799--38739858	25	2.4	25	97	0	111	48	20	8	23	1.76
38749129--38749209	20	4.0	20	77	9	83	45	20	23	9	1.81
38753246--38753305	26	2.3	27	82	8	79	28	11	16	43	1.83
38753258--38753306	26	1.9	26	91	4	82	26	14	16	42	1.86
38757494--38757731	131	1.8	131	87	1	361	25	27	23	23	2.00
38759179--38759296	41	3.0	40	80	8	127	31	30	21	16	1.96
38763674--38763698	6	4.2	6	100	0	50	16	16	0	68	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38765519--38765545	11	2.5	11	100	0	54	44	25	0	29	1.54
38765593--38765653	32	1.9	32	96	0	113	39	16	16	27	1.90
38769242--38769281	21	1.9	21	89	0	62	65	17	12	5	1.44
38769722--38769758	18	2.1	18	94	0	65	48	16	8	27	1.74
38769728--38769758	9	3.4	9	90	0	53	48	16	9	25	1.76
38773524--38773553	14	2.2	13	94	5	51	30	0	6	63	1.20
38791161--38791199	14	2.7	15	84	11	55	33	30	2	33	1.72
38792579--38792735	56	2.8	56	90	0	242	31	7	17	43	1.77
38794566--38794596	12	2.6	12	94	0	53	6	29	41	22	1.78
38798399--38798520	27	4.6	27	88	1	158	34	19	20	25	1.96
38798402--38798539	26	5.3	26	85	3	154	32	20	22	24	1.98
38798399--38798539	53	2.7	53	87	5	189	32	19	22	24	1.97
38798583--38798641	24	2.5	24	86	5	84	25	8	20	45	1.79
38798715--38798767	27	2.0	27	85	7	72	22	24	18	33	1.97
38798787--38799004	32	6.8	32	81	0	238	22	18	19	38	1.93
38798787--38799004	96	2.3	96	85	1	276	22	18	19	38	1.93
38798787--38799042	32	8.0	32	79	1	163	23	19	17	39	1.93
38798853--38799042	96	2.0	96	82	0	236	23	20	16	38	1.92
38807694--38807732	12	3.2	12	85	0	51	20	23	5	51	1.67
38815864--38815963	31	3.1	31	70	13	103	47	8	2	43	1.44
38815864--38815993	65	2.0	65	98	0	251	48	6	2	43	1.40
38815864--38815975	31	3.5	31	70	11	100	46	7	2	43	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38816173--38816202	3	10.0	3	100	0	60	66	0	0	33	0.92
38818232--38818278	21	2.3	21	89	7	71	44	2	6	46	1.40
38824454--38824494	12	3.5	12	83	6	57	58	17	9	14	1.62
38842161--38842206	21	2.2	21	100	0	92	30	0	26	43	1.55
38848898--38848928	16	1.9	16	100	0	62	19	16	6	58	1.59
38858987--38859028	21	2.0	21	100	0	84	47	14	14	23	1.80
38861879--38861938	30	2.0	31	86	3	86	36	25	11	26	1.90
38861734--38861925	89	2.1	94	80	6	225	31	20	10	36	1.88
38868820--38868859	20	1.9	22	90	10	66	42	12	5	40	1.64
38874232--38874273	21	2.0	22	81	13	52	47	28	4	19	1.69
38876316--38876411	31	3.0	32	92	1	158	43	15	15	25	1.86
38877493--38877539	20	2.3	20	82	13	53	34	2	0	63	1.06
38877922--38877983	31	2.0	31	100	0	124	45	29	9	16	1.79
38883108--38883199	46	2.0	46	97	0	175	28	20	19	31	1.97
38884539--38884568	2	15.0	2	100	0	60	50	0	50	0	1.00
38888256--38888359	49	2.1	49	90	0	163	32	8	10	48	1.68
38891304--38892130	41	20.1	41	98	0	1582	27	21	28	22	1.99
38898655--38898762	31	3.2	31	65	25	83	43	2	18	35	1.65
38898659--38898768	33	3.2	33	67	20	98	42	2	18	36	1.64
38898648--38898789	71	2.0	71	98	0	275	44	4	19	32	1.70
38901160--38901202	21	2.0	21	86	8	61	37	2	6	53	1.41
38901294--38901325	10	2.8	12	86	13	50	46	3	0	50	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38905725--38905860	69	2.0	69	88	0	200	41	5	8	43	1.60
38911318--38911429	54	2.1	54	83	3	136	27	24	12	35	1.91
38911387--38911422	18	1.9	18	88	5	54	22	27	16	33	1.95
38911388--38911427	18	2.2	18	86	0	53	30	27	12	30	1.93
38918606--38918657	24	2.2	24	85	0	68	36	3	5	53	1.43
38920277--38920325	19	2.6	19	93	0	89	24	14	42	18	1.87
38920742--38920770	12	2.5	12	94	5	51	75	0	24	0	0.80
38923237--38923269	8	4.1	8	100	0	66	24	24	0	51	1.48
38927101--38927347	50	4.8	50	80	3	235	23	28	20	27	1.99
38927100--38927336	99	2.3	105	80	7	263	24	28	20	27	1.99
38932936--38932970	16	2.1	17	89	10	54	71	2	0	25	1.00
38947015--38947047	7	4.9	7	85	7	50	0	3	12	84	0.72
38947015--38947044	13	2.3	13	94	0	51	0	3	10	86	0.67
38951005--38951059	28	2.0	28	100	0	110	25	23	18	32	1.97
38963370--38963509	42	3.3	42	79	5	120	32	24	17	25	1.96
38967571--38967602	13	2.5	13	100	0	64	21	37	12	28	1.90
38971562--38971603	21	2.0	21	86	9	59	14	11	33	40	1.82
38979701--38979786	24	3.5	24	82	7	102	22	23	23	31	1.98
38979715--38979806	25	3.8	24	78	13	80	21	25	23	29	1.99
38987640--38987679	7	5.6	7	96	3	71	0	12	0	87	0.54
39008325--39008411	36	2.4	36	100	0	174	43	20	9	26	1.82
39009033--39009139	49	2.2	49	100	0	214	25	26	16	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39009596--39009677	41	2.0	42	90	2	130	47	8	3	40	1.52
39010433--39010466	6	5.7	6	85	0	50	79	0	0	20	0.73
39024670--39024860	96	2.0	96	97	0	364	19	28	16	35	1.94
39025201--39025241	21	2.0	21	90	0	64	19	29	21	29	1.98
39031762--39031847	42	2.0	42	97	0	163	38	26	6	27	1.82
39050241--39051220	500	2.0	500	100	0	1960	38	11	13	36	1.80
39059889--39059950	32	1.9	32	87	6	90	24	19	25	30	1.98
39070756--39070780	10	2.5	10	100	0	50	16	32	0	52	1.44
39077442--39077924	27	17.9	27	83	0	563	41	21	18	18	1.91
39078275--39078449	28	6.3	28	87	0	235	24	25	23	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203