genome.fa.s17.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  112  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35451546--35451602	9	6.1	10	75	19	52	54	1	0	43	1.10
35451548--35451603	19	3.1	17	76	19	60	57	1	0	41	1.09
35451550--35451601	27	1.9	27	88	7	79	57	1	0	40	1.10
35451547--35451602	8	6.1	9	80	17	62	55	1	0	42	1.10
35468064--35468103	13	3.0	13	82	7	53	0	7	7	85	0.76
35469068--35469099	14	2.2	15	94	5	57	53	0	0	46	1.00
35472806--35472903	28	3.4	28	76	12	92	29	6	2	62	1.31
35472878--35472931	18	2.9	18	86	5	72	27	5	0	66	1.13
35473020--35473244	88	2.5	89	81	5	251	36	7	17	37	1.79
35476634--35476713	41	2.0	40	90	2	124	32	25	17	25	1.97
35476863--35477145	30	9.3	30	82	4	316	43	18	8	30	1.78
35480894--35480927	14	2.4	14	95	5	59	20	44	8	26	1.81
35484207--35484252	21	2.2	21	84	0	56	10	23	41	23	1.86
35498155--35498185	16	1.9	16	93	0	53	9	6	0	83	0.79
35500437--35500539	53	1.9	53	86	3	145	36	7	11	43	1.70
35502423--35502577	77	2.0	76	96	1	283	34	10	23	32	1.88
35502578--35502621	23	1.9	23	85	0	61	38	13	15	31	1.87
35502675--35502700	9	2.9	9	100	0	52	57	19	0	23	1.40
35502807--35502849	19	2.2	20	84	12	54	55	4	2	37	1.33
35503200--35503239	21	1.9	21	90	10	64	55	10	12	22	1.67
35504088--35504129	13	3.3	13	78	18	52	61	2	0	35	1.09
35504247--35504292	23	2.0	23	91	0	74	30	8	13	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35511366--35511469	18	5.6	18	73	23	58	43	11	12	32	1.78
35511312--35511500	93	2.0	95	84	10	246	43	10	11	34	1.75
35511381--35511427	24	2.0	24	91	4	78	38	10	6	44	1.65
35511406--35511597	17	11.2	17	71	17	114	42	9	12	35	1.76
35511405--35511598	35	5.7	33	72	18	105	42	9	12	35	1.76
35511302--35511590	17	16.4	18	67	19	96	44	10	12	32	1.76
35511412--35511512	52	1.9	52	80	11	118	46	10	11	30	1.75
35511717--35511755	20	2.0	20	94	0	69	43	10	7	38	1.67
35512079--35512115	16	2.3	16	90	0	56	2	10	0	86	0.67
35512101--35512174	13	5.4	13	71	16	60	1	16	5	77	1.03
35512492--35512552	15	4.2	15	73	19	58	4	18	0	77	0.95
35512508--35512559	15	3.2	15	79	15	59	3	21	0	75	0.97
35512499--35512555	21	2.7	20	75	8	60	3	19	0	77	0.92
35513203--35513326	30	4.2	29	76	11	101	39	7	19	33	1.79
35513221--35513355	30	4.6	29	83	6	155	40	7	19	33	1.79
35513743--35514329	75	7.8	74	81	7	585	34	19	16	28	1.94
35513702--35514329	226	2.8	223	83	6	730	35	19	16	28	1.93
35513743--35514326	150	3.9	149	84	6	687	34	19	16	28	1.94
35526218--35526500	17	16.4	17	70	19	144	42	10	13	33	1.78
35526218--35526402	92	2.0	91	82	8	223	43	10	12	33	1.77
35526307--35526500	32	5.7	33	69	19	132	39	10	14	35	1.81
35526620--35526658	20	2.0	19	90	5	60	38	10	10	41	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35526986--35527037	15	3.4	15	80	17	54	0	17	0	82	0.66
35526987--35527064	33	2.6	31	81	16	85	1	14	3	80	0.91
35526986--35527037	16	3.0	17	80	11	61	0	17	0	82	0.66
35526986--35527064	12	6.8	12	72	10	58	1	15	3	79	0.93
35527393--35527482	12	7.2	12	74	15	60	2	23	0	74	0.93
35527598--35527654	19	3.0	18	80	10	60	3	8	17	70	1.28
35528158--35528251	29	3.2	30	75	13	88	40	8	18	32	1.80
35529468--35529497	14	2.1	14	93	0	51	16	3	33	46	1.64
35532888--35532952	20	3.2	20	70	8	60	15	33	23	27	1.95
35532888--35532976	41	2.2	42	89	4	137	15	35	21	26	1.94
35535442--35535486	15	3.0	15	80	0	54	37	15	2	44	1.59
35542687--35542712	6	4.3	6	100	0	52	15	0	0	84	0.62
35558219--35558261	20	2.2	20	83	8	52	41	0	2	55	1.12
35560417--35560455	19	2.1	19	95	0	69	35	15	12	35	1.86
35568390--35568431	18	2.3	18	95	0	75	64	11	14	9	1.50
35570465--35570531	33	2.1	33	82	2	82	25	32	23	17	1.97
35570476--35570540	33	2.0	33	84	0	85	26	33	21	18	1.96
35572960--35573014	19	3.1	18	75	10	60	3	16	5	74	1.15
35577460--35577545	23	3.7	23	75	17	97	17	17	15	50	1.79
35583263--35583470	91	2.3	91	90	0	317	46	3	3	46	1.37
35583385--35583445	28	2.2	28	85	5	81	45	0	3	50	1.17
35583303--35583445	44	3.2	43	69	20	121	46	2	3	48	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35583497--35583805	66	5.2	57	66	20	184	42	2	4	50	1.37
35583486--35583898	120	3.4	120	97	0	756	42	2	5	50	1.37
35583611--35583662	15	3.6	15	80	12	56	44	0	1	53	1.11
35583731--35583782	15	3.6	15	80	12	56	44	0	1	53	1.11
35583860--35583901	15	2.7	16	82	14	52	45	0	2	52	1.13
35583851--35583892	15	2.9	15	82	10	52	47	0	0	52	1.00
35589849--35589908	3	20.3	3	96	3	113	68	0	0	31	0.90
35591492--35592060	44	12.9	43	64	14	149	28	23	18	29	1.98
35591417--35592934	132	11.5	132	91	1	2109	28	24	18	28	1.98
35594138--35594249	42	2.7	42	92	2	190	24	28	14	33	1.94
35596897--35597499	301	2.0	301	97	0	1125	17	25	19	37	1.93
35597442--35598256	404	2.0	407	91	4	1342	26	19	19	35	1.95
35610631--35610669	10	4.0	10	83	3	53	76	2	7	12	1.09
35610633--35610706	29	2.6	28	76	18	71	78	5	9	6	1.09
35611139--35611189	13	4.1	13	82	12	63	76	1	19	1	0.98
35612169--35612688	100	5.2	100	87	3	690	29	21	22	26	1.99
35612169--35612688	200	2.6	203	89	2	762	29	21	22	26	1.99
35612183--35612542	50	7.2	50	66	1	200	28	21	24	26	1.99
35612702--35613193	40	11.7	40	68	13	247	30	22	20	25	1.98
35612692--35613246	127	4.4	127	92	0	903	31	22	20	25	1.98
35612702--35613347	44	15.0	43	67	15	178	31	22	20	25	1.98
35617887--35617935	25	2.0	25	87	0	71	46	10	4	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35622472--35623000	128	4.1	128	89	0	792	25	24	20	29	1.99
35622972--35623083	44	2.5	44	89	0	170	25	26	21	26	1.99
35633853--35633965	58	1.9	58	91	3	183	49	8	2	38	1.48
35635123--35635284	38	4.3	38	98	0	297	31	36	11	20	1.88
35643944--35643986	23	1.9	23	90	4	70	27	4	23	44	1.73
35644058--35644082	13	1.9	13	100	0	50	16	28	16	40	1.89
35646288--35646350	34	1.9	32	93	6	108	44	9	4	41	1.58
35646423--35646565	72	2.0	71	98	1	277	57	6	4	31	1.45
35646651--35646690	20	2.0	20	95	0	71	47	15	10	27	1.77
35646639--35646705	34	1.9	35	90	3	109	43	16	8	31	1.79
35659748--35659784	19	2.0	19	85	15	51	45	0	0	54	1.00
35659949--35660039	45	2.0	45	85	2	121	37	28	6	27	1.82
35660020--35660088	16	4.2	16	96	3	129	37	37	0	24	1.56
35660020--35660088	33	2.1	32	97	2	129	37	37	0	24	1.56
35660966--35661003	20	1.9	20	89	10	60	39	0	0	60	0.97
35660952--35661014	23	2.8	23	78	7	67	42	1	0	55	1.09
35662968--35663011	11	4.2	10	85	8	61	18	0	4	77	0.94
35662968--35663011	5	8.4	5	85	9	61	18	0	4	77	0.94
35662968--35663008	16	2.6	16	92	0	64	17	0	4	78	0.93
35663109--35663141	13	2.3	15	90	10	52	18	6	24	51	1.68
35664961--35664989	2	14.5	2	100	0	58	0	0	48	51	1.00
35670425--35670690	86	3.1	87	84	3	358	36	16	16	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35678508--35678537	5	5.8	5	92	7	51	20	0	0	80	0.72
35678504--35678537	11	3.2	11	87	8	52	20	0	0	79	0.73
35681520--35681626	54	2.0	54	96	0	196	42	9	16	30	1.80
35681520--35681825	135	2.3	135	87	3	447	42	9	15	33	1.79
35684495--35684534	19	2.2	19	86	8	57	22	5	17	55	1.61
35699320--35699395	39	1.9	39	91	0	125	21	3	18	56	1.57
35700272--35700304	15	2.3	15	94	5	59	6	6	12	75	1.16
35701192--35701270	31	2.5	31	75	15	83	30	0	5	64	1.15
35701212--35701261	19	2.6	19	81	6	57	30	0	2	68	1.01
35701718--35701752	15	2.3	15	95	0	61	22	0	11	65	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203