genome.fa.s17.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  139  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44181719--44182376	85	7.7	85	79	2	586	18	30	32	18	1.95
44181591--44181878	128	2.3	128	86	0	398	20	33	30	15	1.94
44181564--44181951	213	1.8	213	84	4	532	20	32	30	17	1.95
44181723--44182376	170	3.8	171	78	3	656	18	30	32	18	1.95
44181719--44182376	255	2.6	254	82	2	793	18	30	32	18	1.95
44181719--44182461	255	2.9	252	77	5	717	19	30	32	18	1.95
44181534--44182785	85	14.7	85	75	6	346	18	29	32	18	1.96
44184116--44184294	40	4.5	39	79	7	157	26	26	20	26	1.99
44184495--44184621	64	2.0	64	98	0	245	18	24	19	37	1.94
44185961--44186144	85	2.2	86	84	1	235	20	30	31	17	1.95
44186099--44186260	43	3.8	42	79	6	173	18	27	33	20	1.96
44186084--44186246	86	1.9	86	83	2	211	19	27	33	19	1.96
44187445--44187943	249	2.0	249	100	0	998	30	21	26	21	1.98
44201005--44201113	54	2.0	54	98	0	209	44	16	14	24	1.86
44201027--44201113	29	3.1	29	62	18	76	43	14	14	26	1.85
44214218--44214363	40	3.6	41	82	9	176	23	22	28	25	2.00
44214219--44214382	40	4.1	40	80	9	120	25	22	28	23	1.99
44214218--44214396	80	2.2	80	79	6	177	25	21	27	24	1.99
44218785--44218917	43	3.1	43	86	4	187	15	27	36	21	1.93
44219384--44219488	43	2.5	43	79	1	122	21	24	32	20	1.98
44220331--44223463	85	36.8	85	77	6	2125	19	30	32	18	1.95
44220312--44223421	128	24.3	128	70	11	1111	19	30	32	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44220414--44223203	213	13.1	211	71	10	837	19	30	32	18	1.95
44220314--44223463	298	10.6	295	74	7	1742	19	30	32	18	1.95
44220331--44223418	383	8.1	380	75	8	2122	19	30	32	18	1.95
44232366--44232452	43	2.0	43	86	0	120	16	33	34	16	1.91
44232924--44233217	43	6.9	42	73	10	177	18	25	32	22	1.97
44238641--44239783	85	13.4	84	77	6	796	18	30	32	18	1.95
44238648--44240300	128	13.0	126	71	9	724	18	30	32	18	1.95
44238828--44240297	85	17.3	85	73	8	610	18	30	32	18	1.95
44238696--44239997	213	6.1	213	77	5	1071	18	30	32	18	1.95
44240235--44240320	43	2.0	43	84	8	113	16	27	34	20	1.94
44244233--44244525	43	6.9	42	84	5	338	19	27	32	21	1.97
44244231--44244517	85	3.4	83	84	4	349	18	27	33	21	1.96
44244791--44245591	85	9.4	85	78	5	710	19	30	30	18	1.96
44244890--44245680	43	18.6	41	69	11	273	18	30	31	18	1.95
44245444--44245692	128	1.9	128	83	1	320	19	30	30	19	1.96
44245572--44246093	85	6.1	85	75	4	433	17	30	32	19	1.95
44245444--44245721	128	2.2	128	81	3	310	19	30	31	19	1.96
44245274--44245862	298	2.0	298	81	5	708	19	30	30	19	1.96
44245169--44245975	383	2.1	383	78	5	833	18	30	31	19	1.96
44245597--44246081	255	1.9	256	82	3	618	18	30	31	19	1.96
44246044--44246215	43	4.0	43	78	6	177	17	27	34	20	1.95
44249258--44249353	43	2.2	43	83	1	111	17	32	30	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44252930--44253034	23	4.8	23	71	16	73	17	16	26	40	1.90
44255952--44256055	50	2.0	52	83	3	131	26	35	19	18	1.95
44257519--44257558	21	2.0	21	90	5	64	65	2	12	20	1.38
44260007--44260045	19	2.0	20	95	5	71	12	30	15	41	1.85
44260050--44260088	20	2.0	20	94	0	69	25	25	15	33	1.95
44262615--44262762	25	6.0	24	72	17	106	32	21	23	22	1.98
44262615--44262749	49	2.7	50	84	5	168	31	21	24	22	1.98
44267151--44267289	50	2.8	49	77	10	147	20	30	23	25	1.99
44276352--44276393	19	2.2	19	86	0	57	38	0	47	14	1.44
44276358--44276404	15	3.1	16	82	17	64	36	0	46	17	1.48
44281906--44281984	37	2.1	37	88	4	115	25	30	18	25	1.98
44282103--44283627	47	32.4	47	97	0	2798	29	28	10	31	1.90
44285919--44285968	20	2.5	20	80	0	64	32	6	36	26	1.81
44287390--44287500	29	3.9	28	76	10	93	59	1	7	31	1.35
44287815--44287871	9	6.3	9	78	8	53	57	1	8	31	1.39
44290842--44291441	89	6.8	89	88	0	853	28	25	18	28	1.98
44290842--44291441	177	3.4	177	90	0	932	28	25	18	28	1.98
44291011--44291415	45	9.1	45	65	9	220	27	24	17	30	1.97
44293686--44293724	6	6.8	6	88	8	55	2	15	0	82	0.79
44293736--44293771	16	2.2	16	95	0	63	11	2	8	77	1.08
44293736--44293773	9	4.4	9	83	12	53	10	2	7	78	1.04
44298026--44298070	18	2.7	16	83	16	56	6	2	35	55	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44299018--44299094	30	2.5	31	75	12	88	37	15	19	27	1.92
44299354--44299410	26	2.4	24	85	11	73	36	7	3	52	1.46
44299928--44299992	26	2.4	26	89	5	94	61	0	7	30	1.24
44313454--44313498	21	2.1	21	83	0	54	44	0	2	53	1.13
44314213--44322121	617	12.3	617	80	11	5504	34	24	11	29	1.91
44316817--44318468	138	12.0	138	99	0	3268	34	26	10	29	1.89
44328962--44329042	9	8.6	9	81	10	65	61	4	0	33	1.17
44328962--44329004	10	4.5	10	94	2	63	65	6	0	27	1.18
44328962--44329004	19	2.2	20	88	8	63	65	6	0	27	1.18
44328964--44329042	10	8.2	10	77	10	58	62	5	0	32	1.17
44329523--44329598	10	7.9	10	80	5	86	34	0	7	57	1.28
44329511--44329598	19	4.7	18	78	13	72	35	0	9	55	1.32
44329653--44329731	10	8.1	9	76	14	68	32	0	0	67	0.91
44329655--44329721	20	3.3	21	89	8	104	34	0	0	65	0.93
44329653--44329733	20	4.2	19	86	7	94	33	0	0	66	0.92
44329669--44329732	9	6.8	9	78	15	67	32	0	0	67	0.91
44329670--44329741	29	2.4	29	86	13	94	31	0	0	68	0.90
44329652--44329757	10	10.3	11	72	20	63	33	0	0	65	1.00
44344976--44345069	47	2.0	47	91	0	152	30	9	30	28	1.89
44345047--44345090	21	2.1	21	100	0	88	34	4	27	34	1.77
44345000--44345137	68	2.0	68	95	0	249	31	7	29	31	1.84
44345068--44345160	47	2.0	47	100	0	186	31	10	30	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44351746--44351797	23	2.3	23	89	0	77	50	9	1	38	1.46
44351756--44351803	23	2.1	23	100	0	96	43	12	0	43	1.42
44360574--44360838	40	6.7	40	85	5	286	26	27	21	24	1.99
44360541--44360838	80	3.7	80	79	9	263	25	27	21	25	1.99
44360770--44360847	40	1.9	41	82	10	97	26	28	20	24	1.99
44364144--44364323	90	2.0	90	95	0	324	33	14	16	35	1.89
44366652--44366769	54	2.2	54	81	3	139	25	22	33	19	1.97
44372272--44372317	14	3.3	14	80	17	51	52	17	0	30	1.45
44373483--44373554	31	2.3	31	85	0	90	18	20	19	41	1.90
44374176--44374206	16	1.9	16	100	0	62	45	22	19	12	1.84
44383501--44383562	28	2.2	29	82	5	83	30	19	17	32	1.95
44383709--44383892	60	3.1	60	79	6	203	28	23	11	35	1.91
44390524--44390550	13	2.1	13	100	0	54	62	0	0	37	0.95
44390537--44390579	17	2.5	18	77	11	54	55	0	4	39	1.20
44391100--44391128	6	4.8	6	100	0	58	34	0	51	13	1.42
44396642--44396694	25	2.1	25	96	0	97	52	16	3	26	1.61
44399816--44399964	53	2.8	53	91	0	244	44	9	23	22	1.82
44421764--44421971	104	2.0	104	96	0	380	33	15	25	25	1.95
44430870--44431177	40	7.7	40	97	0	562	30	20	26	22	1.98
44435710--44435781	29	2.5	29	77	4	83	43	12	13	30	1.82
44441899--44442005	29	3.7	29	82	5	126	40	23	16	19	1.91
44445302--44445488	32	5.9	32	78	5	148	39	19	18	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44445298--44445488	64	3.0	63	76	4	179	40	19	18	21	1.92
44445302--44445486	95	1.9	95	82	4	230	39	20	18	21	1.93
44445659--44445716	24	2.4	24	91	0	89	48	22	8	20	1.77
44445706--44445758	26	2.0	27	88	3	81	35	22	16	24	1.95
44445791--44446071	27	10.4	27	77	3	235	23	20	20	35	1.96
44445752--44445940	80	2.3	79	88	2	261	23	18	20	37	1.94
44445742--44446071	81	4.1	80	79	3	279	23	20	20	36	1.96
44453107--44453143	19	1.9	19	88	0	56	54	0	5	40	1.24
44454285--44454322	13	2.9	13	88	0	58	26	13	13	47	1.79
44455697--44455774	25	3.1	25	86	0	120	26	19	23	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203