genome.fa.s17.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  161  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51043075--51043143	30	2.2	32	77	10	81	47	17	10	24	1.78
51047176--51047223	15	2.9	16	77	17	53	43	0	2	54	1.12
51054217--51054255	18	2.1	18	85	9	51	51	10	0	38	1.36
51055906--51056297	67	5.8	67	88	0	568	37	2	18	41	1.64
51056444--51056584	23	6.0	23	72	13	101	21	24	19	34	1.96
51056444--51056584	45	3.0	45	78	12	142	21	24	19	34	1.96
51065984--51066068	45	1.9	45	85	7	120	36	27	5	30	1.80
51066046--51066078	16	2.1	16	100	0	66	18	33	6	42	1.75
51069166--51069791	316	2.0	316	98	0	1209	32	14	28	24	1.95
51075442--51075534	23	4.1	23	79	6	91	34	11	16	37	1.85
51076037--51076293	72	3.6	70	81	4	275	20	23	21	34	1.97
51076061--51076244	36	5.1	35	68	7	100	21	24	20	33	1.97
51079156--51079199	22	1.9	24	86	9	65	56	2	20	20	1.52
51079447--51079493	24	2.0	23	84	12	60	51	0	14	34	1.43
51081533--51081582	21	2.3	22	82	6	66	44	18	14	24	1.86
51082389--51082427	20	2.0	20	95	5	71	35	15	23	25	1.94
51082642--51082668	11	2.5	11	100	0	54	74	0	18	7	1.05
51083266--51083319	21	2.7	20	86	11	74	64	1	0	33	1.04
51084749--51084797	21	2.4	21	89	3	73	20	28	8	42	1.80
51084969--51085036	21	3.3	21	85	4	86	45	16	23	14	1.84
51086790--51086946	41	3.8	41	83	3	190	31	26	19	21	1.97
51090051--51090093	19	2.3	19	84	4	52	34	4	4	55	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51090063--51090170	10	11.5	10	74	12	77	33	2	0	62	1.15
51090064--51090171	29	3.9	26	78	12	99	33	2	0	62	1.15
51090063--51090168	19	5.7	18	74	12	63	33	2	0	62	1.16
51090082--51090168	37	2.3	38	82	7	106	33	3	0	63	1.11
51090097--51090174	28	2.8	28	83	7	97	32	2	0	65	1.06
51090222--51090248	14	1.9	14	100	0	54	29	0	7	62	1.22
51090602--51090662	30	2.0	30	84	6	79	37	11	13	37	1.80
51090772--51090822	18	2.7	19	85	8	61	78	1	5	13	1.02
51090788--51090820	12	2.6	13	85	9	50	81	0	3	15	0.80
51090801--51090836	15	2.2	16	90	9	56	77	0	2	19	0.88
51090782--51090836	18	3.1	18	82	7	51	78	0	5	16	0.93
51090817--51090874	22	2.5	24	75	8	66	63	3	1	31	1.21
51098052--51098094	15	2.8	16	79	10	54	37	0	2	60	1.10
51103111--51103153	6	7.5	6	87	7	63	72	11	0	16	1.13
51103104--51103153	12	4.5	11	85	11	66	72	12	0	16	1.13
51103104--51103153	18	2.9	17	82	8	66	72	12	0	16	1.13
51103155--51103203	19	2.5	19	87	12	64	67	10	14	8	1.42
51104894--51105030	43	3.2	42	63	20	104	27	24	24	24	2.00
51104847--51105143	85	3.5	86	89	1	452	28	23	24	23	1.99
51105248--51105360	44	2.6	44	78	2	120	32	18	27	21	1.97
51106977--51107018	15	2.8	16	79	13	54	38	0	0	61	0.96
51109683--51109805	58	2.1	59	89	4	187	33	18	30	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51111285--51111327	22	1.9	23	90	4	70	30	27	0	41	1.56
51113219--51113258	18	2.2	18	90	0	62	20	30	7	42	1.79
51113851--51113907	22	2.6	22	75	2	53	47	31	3	17	1.65
51113851--51113948	50	2.0	50	91	0	160	47	31	2	18	1.60
51113897--51114360	22	21.4	22	78	11	336	45	34	0	19	1.54
51113897--51114280	21	18.0	21	79	9	320	45	34	0	19	1.55
51113890--51114351	7	65.4	7	66	22	114	45	34	0	19	1.54
51114266--51114357	43	2.1	43	93	0	157	44	36	0	18	1.50
51114336--51114366	15	2.1	15	93	0	53	48	29	0	22	1.51
51118721--51119096	126	3.0	124	85	2	529	29	23	16	30	1.96
51120418--51120452	9	3.8	9	96	3	61	54	0	2	42	1.15
51120413--51120455	9	5.0	8	86	8	50	55	0	2	41	1.12
51120413--51120455	18	2.5	17	85	14	61	55	0	2	41	1.12
51125461--51125506	21	2.3	19	82	14	56	26	21	8	43	1.81
51126129--51126232	38	2.7	38	92	0	163	32	11	18	37	1.87
51126369--51126670	43	7.0	43	75	5	182	26	17	18	37	1.93
51126424--51126624	87	2.3	86	79	5	201	27	16	16	39	1.90
51126907--51126976	16	4.4	16	90	0	86	34	0	32	32	1.58
51126955--51127064	45	2.6	43	80	9	129	34	5	28	31	1.80
51127210--51127244	18	2.0	17	88	5	52	54	0	0	45	0.99
51127238--51127424	61	3.1	61	69	20	183	49	6	2	41	1.42
51127309--51127360	15	3.6	15	80	12	56	53	1	0	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51127196--51127489	59	4.9	58	67	18	174	50	4	2	42	1.35
51127196--51127485	120	2.4	120	94	1	501	50	4	2	43	1.36
51127524--51127607	39	2.2	39	93	4	143	59	11	5	22	1.54
51131991--51132215	110	2.1	109	99	0	441	40	16	10	33	1.82
51137186--51137268	19	4.2	19	75	14	62	43	2	0	54	1.13
51137201--51137271	18	3.6	19	71	17	56	40	1	0	57	1.07
51143701--51143741	18	2.2	19	87	12	59	73	2	0	24	0.96
51146940--51147037	42	2.3	41	76	11	99	25	18	28	27	1.98
51151600--51151880	31	8.6	31	69	20	166	46	1	3	47	1.29
51151560--51151897	100	3.4	100	98	0	649	48	1	3	46	1.31
51155843--51155886	13	3.3	13	93	3	70	45	6	0	47	1.29
51160151--51160192	18	2.4	17	88	7	66	38	0	0	61	0.96
51160136--51160231	28	3.4	28	71	16	90	37	1	0	61	1.03
51175937--51175996	23	2.5	24	78	8	68	63	0	1	35	1.05
51175939--51175997	8	7.4	8	74	14	59	62	0	1	35	1.05
51175941--51176030	17	5.3	17	72	13	69	61	2	2	34	1.21
51175974--51176043	35	2.0	36	88	2	106	62	4	2	30	1.28
51177965--51178008	19	2.3	19	84	7	54	52	0	2	45	1.13
51178618--51178657	21	1.9	21	85	10	55	50	2	5	42	1.37
51179635--51179694	21	2.8	22	73	14	61	51	11	15	21	1.74
51188360--51188384	7	3.6	7	100	0	50	24	28	16	32	1.96
51192895--51192935	21	2.0	21	90	0	64	19	29	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51202045--51202085	20	2.0	20	95	0	73	43	7	14	34	1.73
51206922--51206981	25	2.4	25	81	8	79	16	25	26	31	1.96
51208133--51208163	12	2.6	12	94	0	53	25	38	25	9	1.86
51219367--51219394	9	3.1	9	100	0	56	35	0	0	64	0.94
51222267--51222308	18	2.2	20	87	8	61	50	0	9	40	1.35
51223373--51223433	24	2.5	25	79	10	74	50	8	0	40	1.32
51226274--51226321	18	2.7	18	71	12	53	64	0	4	31	1.12
51226519--51226566	3	16.0	3	100	0	96	66	0	0	33	0.92
51241185--51241256	5	13.4	5	77	18	56	80	1	4	13	0.92
51241178--51241257	12	6.7	12	77	11	83	80	1	3	15	0.92
51241178--51241217	17	2.4	16	88	12	62	77	0	0	22	0.77
51241178--51241244	22	3.1	22	77	14	68	79	1	4	14	0.97
51241181--51241256	18	4.2	18	78	9	75	80	1	3	14	0.92
51241177--51241258	25	3.3	24	77	11	78	78	1	3	17	0.97
51244367--51244901	270	2.0	270	90	2	851	32	19	19	28	1.96
51245446--51245481	15	2.5	14	86	8	54	44	8	0	47	1.33
51247748--51247826	24	3.3	23	74	15	70	16	24	21	37	1.93
51255058--51255105	17	2.8	17	78	6	53	8	14	31	45	1.74
51260765--51260812	24	2.0	24	95	0	87	60	0	22	16	1.36
51263223--51263320	23	4.3	23	90	2	162	31	26	21	20	1.98
51263230--51263318	45	2.0	45	95	0	160	31	26	22	19	1.97
51270595--51270692	23	4.3	23	90	2	162	31	26	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51270602--51270690	45	2.0	45	95	0	160	31	26	22	19	1.97
51276283--51276738	190	2.5	182	82	9	489	42	12	19	25	1.86
51276756--51276820	14	4.5	14	70	14	51	47	16	10	24	1.79
51280224--51280329	11	10.4	11	70	20	52	58	0	3	37	1.16
51280256--51280318	29	2.1	30	83	13	78	60	0	3	36	1.13
51280212--51280337	40	3.1	40	89	7	193	61	0	3	34	1.12
51280727--51280794	25	2.7	25	83	0	82	29	17	22	30	1.97
51281518--51281623	11	10.4	11	70	20	52	58	0	3	37	1.16
51281550--51281612	29	2.1	30	83	13	78	60	0	3	36	1.13
51281506--51281631	40	3.1	40	89	7	193	61	0	3	34	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203