genome.fa.s17.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  136  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43333162--43333198	18	2.1	18	100	0	74	27	10	32	29	1.90
43334791--43334917	20	6.3	20	74	4	121	11	31	21	36	1.88
43334794--43334912	60	2.0	60	83	3	150	10	32	21	35	1.87
43337153--43337338	50	3.7	50	81	7	202	27	22	26	23	2.00
43340172--43340226	25	2.2	25	80	6	67	20	34	12	32	1.90
43343077--43343105	14	2.1	14	100	0	58	58	0	6	34	1.25
43344763--43344796	16	2.1	16	88	0	50	50	17	8	23	1.74
43351907--43351962	25	2.2	25	83	0	76	44	16	17	21	1.86
43351918--43351966	25	2.0	25	95	0	89	40	18	18	22	1.91
43352871--43353206	50	6.6	50	79	6	286	25	27	18	28	1.98
43352870--43353252	50	7.6	50	79	5	254	25	27	18	28	1.98
43357291--43357408	49	2.4	49	78	7	123	29	19	27	23	1.98
43357620--43357658	20	2.0	20	90	10	62	56	5	23	15	1.59
43361005--43361149	50	2.9	50	86	2	193	28	20	28	22	1.99
43361113--43361247	49	2.8	49	88	0	198	34	19	20	25	1.96
43361437--43361476	20	2.0	20	90	9	64	55	5	25	15	1.60
43369029--43369067	20	2.0	20	90	10	62	56	5	23	15	1.59
43371991--43372167	54	3.3	54	89	1	248	40	15	12	31	1.85
43372056--43372148	19	5.1	19	68	12	68	44	16	11	27	1.82
43376968--43377075	25	4.3	25	87	0	153	25	28	14	31	1.95
43385563--43385644	41	2.0	41	100	0	164	31	17	2	48	1.60
43393526--43393563	18	2.2	18	85	4	51	10	23	47	18	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43401926--43401973	22	2.2	21	82	14	53	50	4	10	35	1.56
43421558--43421632	23	3.3	23	90	0	114	14	20	24	41	1.89
43428459--43428536	20	3.9	20	77	9	79	14	29	15	41	1.86
43435629--43435727	24	4.1	24	85	0	135	42	25	16	16	1.88
43438560--43438623	34	1.9	33	84	6	85	20	23	23	32	1.98
43438661--43438703	23	1.9	23	90	4	70	25	51	4	18	1.66
43438909--43439083	27	6.5	27	80	2	190	36	14	15	33	1.88
43438909--43439081	54	3.2	54	89	0	256	36	14	15	33	1.88
43439176--43439249	23	3.4	21	82	8	60	22	31	29	16	1.96
43439184--43439258	23	3.3	23	90	0	114	22	30	29	17	1.97
43440137--43440189	26	2.0	26	81	0	61	32	18	30	18	1.96
43440681--43441025	27	12.6	27	79	9	254	22	21	19	36	1.95
43440681--43441025	54	6.3	54	78	8	295	22	21	19	36	1.95
43440662--43440877	114	1.9	112	85	7	294	23	23	19	33	1.97
43440768--43440985	80	2.7	80	80	4	251	22	22	19	36	1.95
43448800--43448862	28	2.2	28	82	0	72	33	23	22	20	1.97
43448808--43448864	28	2.0	28	86	0	78	31	24	24	19	1.98
43449017--43449079	22	2.8	22	76	11	67	42	17	22	17	1.89
43449071--43449336	32	8.4	31	73	5	151	38	20	19	21	1.94
43449072--43449336	64	4.2	63	75	8	198	38	20	19	21	1.94
43449377--43449540	27	6.1	27	76	9	131	23	21	18	35	1.95
43449446--43449552	27	4.0	26	78	8	108	21	21	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43450991--43451024	17	2.0	17	88	0	50	50	14	20	14	1.78
43451708--43451909	100	2.0	100	94	0	350	29	13	15	42	1.85
43463531--43463587	28	2.0	28	82	0	69	26	26	22	24	2.00
43474081--43474110	6	4.8	6	92	8	51	30	0	0	70	0.88
43482107--43482199	27	3.4	27	82	5	107	27	16	25	30	1.96
43484003--43484056	20	2.7	21	77	8	67	38	16	22	22	1.93
43488159--43488201	21	2.0	21	82	8	52	39	25	6	27	1.81
43494128--43494300	87	2.0	86	98	0	328	31	17	22	27	1.96
43501824--43501925	33	3.1	33	86	5	145	41	7	23	27	1.82
43508176--43508443	114	2.4	114	83	4	312	20	31	10	37	1.87
43512011--43512149	63	2.2	61	83	9	167	29	9	19	41	1.82
43517171--43517257	38	2.3	38	84	6	104	51	6	4	36	1.49
43519076--43519158	42	2.0	42	97	0	157	39	9	18	32	1.83
43523193--43523331	63	2.2	61	81	9	158	29	8	19	42	1.81
43524100--43524146	18	2.7	18	83	12	62	68	4	21	6	1.30
43527809--43527999	40	4.8	40	89	0	292	37	18	30	14	1.90
43527825--43527996	20	8.6	20	69	10	118	36	18	30	15	1.91
43529269--43529845	43	13.3	43	79	4	496	38	23	17	20	1.93
43531937--43532172	115	2.0	117	95	2	431	44	17	13	25	1.85
43534366--43534498	23	5.8	23	89	0	194	31	27	21	18	1.97
43534366--43534498	69	1.9	69	92	0	221	31	27	21	18	1.97
43536287--43536366	38	2.1	38	97	0	151	58	10	3	27	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43541614--43541671	24	2.3	26	82	8	66	31	6	10	51	1.62
43546556--43546592	9	4.1	9	92	0	65	45	8	10	35	1.69
43546605--43546661	29	1.9	30	82	3	71	31	15	1	50	1.54
43548644--43548675	17	1.9	17	93	6	57	43	0	3	53	1.16
43548608--43548654	5	9.4	5	100	0	94	40	0	0	59	0.97
43548691--43548730	17	2.3	17	91	4	62	75	7	12	5	1.18
43549120--43549166	22	2.0	23	84	12	60	42	0	27	29	1.56
43549420--43549456	18	2.1	18	89	0	56	37	0	16	45	1.47
43549428--43549468	6	6.8	6	94	0	64	34	2	9	53	1.47
43549428--43549483	6	9.3	6	92	0	58	33	3	7	55	1.45
43549592--43549625	17	1.9	18	88	5	52	35	0	26	38	1.57
43551103--43551158	22	2.5	22	82	0	58	66	14	8	10	1.45
43563902--43563941	14	2.9	14	84	0	53	32	7	17	42	1.77
43563925--43563964	20	2.0	20	90	0	62	27	10	12	50	1.72
43563910--43563976	34	1.9	35	90	3	109	31	8	13	46	1.74
43563904--43563980	14	5.0	15	71	20	52	32	9	15	42	1.78
43564965--43565004	14	2.9	14	84	0	53	32	7	17	42	1.77
43564988--43565027	20	2.0	20	90	0	62	25	10	15	50	1.74
43564973--43565039	34	1.9	35	87	3	100	29	8	14	46	1.76
43573741--43573768	12	2.3	12	100	0	56	32	17	14	35	1.90
43574418--43574702	139	2.1	139	92	0	473	44	5	8	41	1.58
43574678--43574826	74	2.0	75	90	3	239	29	14	9	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43575436--43575493	27	2.1	27	100	0	116	32	22	6	37	1.81
43580545--43580578	17	2.0	17	88	11	52	52	0	23	23	1.47
43582781--43582811	14	2.2	14	94	0	53	38	0	9	51	1.35
43584099--43584128	10	3.0	10	90	0	51	10	0	26	63	1.26
43584382--43584419	20	1.9	20	100	0	76	42	5	5	47	1.48
43588326--43588458	40	3.4	40	72	7	110	27	17	23	32	1.96
43594504--43594533	10	3.0	10	90	0	51	10	0	26	63	1.26
43597538--43597788	27	9.4	27	84	4	305	20	17	19	43	1.88
43597538--43597788	53	4.7	54	91	1	357	20	17	19	43	1.88
43601543--43601591	17	2.6	19	84	12	57	51	0	2	46	1.12
43604124--43604152	12	2.3	13	94	5	51	20	6	6	65	1.40
43612606--43612721	43	2.7	43	82	1	144	31	24	18	25	1.98
43618530--43618682	41	3.7	42	78	6	132	30	16	24	28	1.96
43621058--43621111	23	2.3	23	90	0	81	38	31	3	25	1.74
43628762--43628811	23	2.2	24	80	20	63	58	6	0	36	1.23
43630147--43630444	31	9.7	31	87	2	424	43	18	9	28	1.81
43630147--43630455	61	5.0	61	90	0	465	44	18	9	28	1.80
43636501--43636538	7	5.4	7	100	0	76	13	0	0	86	0.56
43637740--43638231	61	8.0	61	95	0	842	43	18	9	28	1.81
43637740--43638231	31	16.1	31	89	3	730	43	18	9	28	1.81
43640506--43640607	42	2.4	43	83	1	125	24	17	25	32	1.97
43645443--43645483	14	2.9	15	78	7	50	36	7	14	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43645452--43645518	34	1.9	35	87	3	100	32	8	11	46	1.72
43645499--43645583	32	2.6	31	76	9	89	25	10	18	44	1.82
43645616--43645643	14	2.0	14	100	0	56	42	0	0	57	0.99
43645856--43645977	39	3.3	39	66	21	116	42	22	9	25	1.83
43645834--43645977	72	2.0	72	98	0	279	43	21	9	26	1.82
43648188--43648243	17	3.1	17	72	18	58	21	12	25	41	1.88
43650457--43650554	25	4.1	25	69	12	80	43	10	18	27	1.82
43650472--43650565	46	2.0	46	100	0	188	42	10	15	30	1.81
43655743--43655776	17	2.0	17	100	0	68	35	17	0	47	1.48
43656508--43656540	13	2.5	13	100	0	66	39	33	21	6	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203