genome.fa.s17.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  114  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35969086--35969118	16	2.1	16	88	11	50	21	24	3	51	1.62
35969958--35969991	13	2.6	13	85	0	50	32	32	26	8	1.87
35971257--35971342	45	1.9	45	90	0	136	40	24	9	25	1.85
35971857--35971893	19	2.0	18	89	5	56	51	13	27	8	1.69
35985423--35985454	16	2.0	16	93	0	55	37	0	15	46	1.46
35988683--35988784	50	2.0	50	100	0	204	29	9	22	38	1.86
35996319--35996526	67	3.2	64	76	10	188	32	17	27	22	1.96
36000268--36000355	45	2.0	45	95	0	158	38	22	12	26	1.90
36002424--36002491	28	2.4	28	85	0	91	29	29	13	27	1.94
36002496--36002580	40	2.1	40	82	0	98	40	23	14	22	1.90
36004349--36004373	13	1.9	13	100	0	50	0	24	44	32	1.54
36004443--36004481	20	2.0	20	84	0	51	20	38	23	17	1.93
36005537--36005607	34	2.1	34	94	0	124	47	15	9	26	1.76
36008277--36008340	31	2.1	31	90	0	101	25	23	15	35	1.94
36008532--36008641	25	4.6	23	87	6	114	29	21	20	28	1.98
36008553--36008644	46	2.0	48	87	8	136	30	20	20	28	1.98
36008532--36008644	24	4.7	25	87	9	139	29	22	21	27	1.99
36008684--36008740	9	5.9	9	73	15	51	35	21	8	35	1.84
36008680--36008742	20	3.2	20	95	0	117	31	19	12	36	1.89
36026067--36026311	55	4.6	54	80	8	256	35	16	24	22	1.95
36026074--36026275	108	1.9	110	88	4	311	33	17	25	23	1.96
36031507--36031531	13	1.9	13	100	0	50	8	40	36	16	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36037480--36037541	31	2.0	32	87	3	90	35	19	22	22	1.96
36043266--36043489	79	2.8	78	83	6	272	25	27	22	24	2.00
36043266--36043489	40	5.7	40	86	6	271	25	27	22	24	2.00
36058434--36058536	43	2.4	43	98	0	197	23	15	34	26	1.94
36058518--36058591	29	2.6	29	86	4	96	27	16	31	25	1.96
36058886--36059073	40	4.7	42	79	9	162	26	20	28	24	1.99
36058886--36059073	80	2.3	80	78	8	197	26	20	28	24	1.99
36059007--36059083	40	1.9	40	86	0	109	22	22	29	25	1.99
36060631--36060916	150	1.9	150	99	0	563	36	23	10	29	1.89
36062630--36062929	150	2.0	150	98	0	582	40	11	23	25	1.88
36063287--36063598	47	6.6	47	87	2	419	32	7	29	30	1.85
36063287--36063598	96	3.3	96	87	3	427	32	7	29	30	1.85
36063287--36063598	143	2.2	143	90	2	486	32	7	29	30	1.85
36063719--36063794	37	2.1	37	87	0	107	22	18	34	25	1.96
36066876--36066967	42	2.2	42	96	0	166	39	21	11	27	1.89
36067112--36067208	26	3.8	25	93	1	158	28	22	22	25	1.99
36067258--36067312	20	2.8	20	86	10	71	34	18	9	38	1.82
36067839--36067907	27	2.6	28	82	13	83	26	21	20	31	1.98
36067851--36067914	27	2.4	27	84	5	85	23	21	17	37	1.94
36067969--36068054	27	3.1	27	75	17	86	36	9	16	38	1.81
36068056--36068159	27	3.9	27	74	3	111	30	8	20	40	1.82
36068060--36068198	27	5.1	27	73	5	93	29	9	20	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36068177--36068414	27	8.8	27	89	0	217	39	8	22	29	1.84
36068195--36068414	54	4.1	54	90	0	323	39	8	23	28	1.84
36068176--36068414	81	3.0	81	87	2	338	38	8	23	29	1.84
36073009--36073069	30	2.0	30	83	0	77	32	22	6	37	1.80
36075277--36075355	31	2.5	31	93	0	140	29	26	17	26	1.98
36075379--36075470	42	2.2	42	94	0	157	41	22	11	23	1.87
36075615--36075685	25	2.8	25	93	2	115	26	23	23	25	2.00
36075735--36075809	20	3.8	20	91	6	111	34	18	9	37	1.83
36075735--36075790	11	5.5	11	71	16	57	32	19	10	37	1.86
36075752--36075808	9	5.8	10	76	15	57	35	19	8	36	1.83
36076507--36076608	27	3.8	27	70	10	73	23	18	19	38	1.93
36076688--36076892	27	7.7	27	80	3	191	28	8	21	41	1.83
36076687--36076892	80	2.6	79	82	5	218	28	8	21	41	1.83
36076713--36076892	53	3.4	54	82	3	204	28	10	21	40	1.85
36076602--36076906	27	11.3	27	74	5	186	30	9	20	39	1.85
36076901--36077121	27	8.2	27	87	1	291	41	8	22	28	1.83
36076884--36077105	107	2.1	107	85	0	291	40	8	21	28	1.83
36076884--36077121	81	3.0	81	87	0	334	40	8	21	28	1.83
36076856--36077121	81	3.3	81	84	1	318	38	8	22	30	1.84
36080132--36080188	9	5.9	9	73	15	51	35	8	21	35	1.84
36080130--36080192	20	3.2	20	95	0	117	36	12	19	31	1.89
36080246--36080389	24	6.0	24	90	8	222	29	20	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36084015--36084045	16	1.9	16	93	0	53	54	19	19	6	1.65
36084292--36084354	26	2.4	26	81	10	74	33	26	11	28	1.91
36088490--36088537	20	2.4	20	96	0	87	14	31	33	20	1.93
36097478--36097509	15	2.1	15	100	0	64	34	0	31	34	1.58
36103563--36103733	60	2.8	60	78	11	170	28	24	19	28	1.98
36106464--36107382	47	19.6	47	98	0	1721	31	8	30	29	1.87
36110418--36110483	33	2.0	33	96	0	123	30	21	19	28	1.98
36111487--36111518	14	2.4	13	90	10	55	18	6	12	62	1.50
36116379--36116525	27	5.4	27	83	0	141	27	15	27	29	1.96
36128827--36129210	192	2.0	193	93	1	655	32	15	25	27	1.96
36133131--36133191	30	2.0	30	90	0	95	13	32	14	39	1.85
36138682--36138707	3	8.7	3	100	0	52	34	65	0	0	0.93
36140629--36140680	18	2.9	18	94	0	86	40	9	13	36	1.77
36144254--36144448	50	3.7	50	80	13	219	28	25	15	29	1.96
36144316--36144432	60	2.0	60	88	6	175	29	23	13	33	1.93
36147635--36147681	19	2.2	22	82	17	55	38	2	6	53	1.39
36147709--36147755	20	2.3	20	85	7	60	17	2	8	72	1.19
36152350--36152410	9	6.8	9	90	0	86	36	13	39	11	1.80
36152901--36152953	9	6.1	9	91	8	92	56	11	0	32	1.35
36152901--36152953	25	2.0	25	92	7	56	56	11	0	32	1.35
36152910--36153190	84	3.4	84	98	1	539	47	8	4	39	1.54
36152994--36153037	9	5.1	9	89	10	74	56	11	0	31	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36153003--36153040	16	2.4	16	95	0	67	55	10	0	34	1.34
36153078--36153121	9	5.1	9	89	10	74	56	11	0	31	1.35
36153087--36153124	16	2.4	16	95	0	67	55	10	0	34	1.34
36153194--36153235	16	2.6	16	92	0	66	42	7	2	47	1.43
36156031--36156060	14	2.1	14	100	0	60	50	23	6	20	1.71
36159695--36159876	54	3.2	53	65	18	143	44	5	8	41	1.59
36159808--36159875	17	3.8	17	71	16	57	48	1	5	44	1.36
36159695--36160052	115	3.1	116	95	1	648	44	6	9	38	1.64
36160258--36160297	18	2.2	18	95	0	71	40	7	30	22	1.81
36160948--36160972	7	3.6	7	100	0	50	60	12	0	28	1.32
36161143--36161180	20	1.9	20	84	10	51	55	7	2	34	1.43
36162154--36162184	11	2.9	11	95	4	55	45	0	35	19	1.51
36167460--36167599	50	2.8	50	85	0	181	27	21	28	22	1.99
36167866--36167904	20	2.0	20	89	0	60	58	2	25	12	1.47
36171845--36171922	3	26.3	3	87	7	115	64	1	1	33	1.10
36172230--36172352	44	2.9	43	79	7	135	34	9	8	47	1.68
36173577--36173608	16	1.9	17	93	6	57	50	15	0	34	1.45
36182953--36182981	14	2.0	15	93	6	51	51	27	0	20	1.47
36186704--36186780	40	1.9	39	82	10	93	32	24	20	22	1.98
36189762--36189882	52	2.3	52	88	4	174	27	12	31	28	1.93
36195860--36195895	5	6.8	5	90	9	54	44	0	0	55	0.99
36195847--36195895	23	2.3	20	82	10	53	40	0	4	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36195860--36195900	15	2.5	17	84	15	59	46	0	2	51	1.14
36197638--36197665	10	2.8	10	100	0	56	28	10	28	32	1.90
36198394--36198448	26	2.1	26	96	0	101	30	14	10	43	1.80
36204915--36205012	37	2.6	39	76	20	104	42	3	3	51	1.33
36205051--36205075	12	2.1	12	100	0	50	52	0	0	48	1.00
36209222--36209384	73	2.2	75	80	6	190	27	15	22	34	1.95
36209732--36209830	35	2.8	35	83	4	119	19	1	44	35	1.57
36209727--36209812	21	4.0	22	70	11	70	20	0	43	36	1.53
36209746--36209827	7	11.7	7	74	10	51	17	1	47	34	1.55
36214037--36214152	58	2.0	58	98	0	223	25	25	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203