genome.fa.s17.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  157  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49880815--49880894	28	2.8	28	79	9	74	32	5	5	57	1.42
49880815--49880894	30	2.8	27	80	12	81	32	5	5	57	1.42
49900503--49900541	19	1.9	19	85	10	51	53	7	2	35	1.43
49901109--49901166	24	2.4	24	82	0	62	17	8	55	18	1.67
49907745--49907791	22	2.1	23	84	11	62	19	10	0	70	1.16
49917413--49917444	10	3.2	10	90	0	55	40	6	0	53	1.26
49917382--49917437	29	1.9	29	88	0	85	32	19	3	44	1.68
49920975--49921008	16	2.1	16	100	0	68	44	0	11	44	1.40
49921189--49921290	52	2.0	52	98	0	195	35	12	26	25	1.92
49921256--49921324	34	2.0	34	97	0	129	30	21	27	20	1.98
49921490--49921530	16	2.6	16	88	0	64	43	4	4	46	1.46
49922071--49922148	41	1.9	41	86	0	111	21	20	16	41	1.91
49922022--49922180	83	1.9	83	83	2	203	20	23	15	39	1.91
49922048--49922211	42	4.0	41	76	4	134	17	25	17	39	1.91
49922022--49922198	83	2.1	84	81	3	196	19	23	16	40	1.91
49926465--49926511	18	2.6	19	83	12	55	61	2	0	36	1.08
49926619--49926688	34	2.1	34	89	5	106	52	22	0	24	1.47
49932528--49932579	19	2.7	20	79	11	63	59	0	3	36	1.16
49932533--49932609	10	8.1	10	71	8	54	62	0	3	33	1.14
49932529--49932608	20	4.2	19	78	10	74	62	0	3	33	1.13
49932541--49932615	18	4.1	17	75	11	51	61	1	4	33	1.23
49932541--49932609	19	3.7	18	75	11	59	63	0	4	31	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49932782--49932822	21	2.0	20	85	4	55	43	0	0	56	0.99
49933891--49933923	16	1.9	18	88	11	52	18	18	9	54	1.69
49936509--49936573	27	2.4	27	89	0	103	23	15	21	40	1.91
49943582--49943616	13	2.6	13	90	4	52	88	2	8	0	0.61
49944926--49945160	88	2.7	88	89	0	344	28	22	25	22	1.99
49944949--49945086	44	3.1	44	65	19	115	27	26	23	22	2.00
49945347--49945566	44	5.0	43	68	12	133	31	17	23	27	1.97
49945143--49945632	264	1.9	264	87	4	729	29	18	23	28	1.98
49945143--49945632	132	3.7	131	85	5	657	29	18	23	28	1.98
49948016--49948074	31	1.9	31	92	0	100	38	11	11	37	1.79
49949748--49949808	29	2.1	29	81	9	70	47	8	4	39	1.55
49952494--49952567	26	2.6	28	83	10	80	2	20	6	70	1.23
49952529--49952562	16	2.1	16	88	5	50	2	17	0	79	0.86
49952571--49952642	5	14.4	5	75	20	62	55	4	1	38	1.28
49952572--49952614	19	2.3	19	92	8	70	55	0	2	41	1.12
49952578--49952643	24	2.7	24	81	9	71	57	4	1	36	1.28
49959064--49959099	13	2.8	13	95	0	63	30	0	8	61	1.26
49959180--49959224	24	1.9	24	86	4	65	37	4	2	55	1.32
49960125--49960177	28	1.9	27	88	3	79	32	15	20	32	1.93
49960225--49960284	7	8.7	7	74	3	50	18	3	35	43	1.67
49960213--49960278	21	3.2	20	80	6	78	19	4	31	43	1.71
49960241--49960292	27	1.9	27	84	0	68	19	7	32	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49963415--49963495	41	2.0	41	90	0	126	48	22	4	24	1.70
49973939--49973981	21	2.2	19	83	8	50	46	9	6	37	1.63
50004149--50004191	19	2.3	19	81	14	54	58	4	6	30	1.45
50004523--50004560	4	9.5	4	88	0	58	23	2	26	47	1.65
50004622--50004764	10	14.9	9	66	22	60	34	2	2	60	1.23
50004687--50004735	19	2.6	19	87	6	64	28	2	4	65	1.22
50004724--50004792	30	2.3	29	90	5	102	44	0	0	55	0.99
50004724--50004791	29	2.3	31	87	7	104	45	0	0	54	0.99
50006908--50006944	18	2.1	18	94	0	65	24	0	59	16	1.37
50007521--50007653	66	2.0	66	100	0	266	39	9	28	22	1.84
50008738--50008818	37	2.2	38	80	8	87	34	28	7	29	1.84
50014676--50014730	26	2.1	26	100	0	110	36	18	10	34	1.86
50020557--50020609	21	2.5	23	76	17	60	33	0	15	50	1.44
50021046--50021108	25	2.5	25	79	5	65	23	26	20	28	1.99
50028104--50028193	45	2.0	45	97	0	171	21	17	16	44	1.87
50028594--50028628	18	2.0	18	88	5	54	31	25	11	31	1.91
50029914--50029963	23	2.2	23	89	3	75	36	6	10	48	1.61
50030484--50030543	28	2.2	28	82	8	70	48	3	0	48	1.18
50030484--50030566	28	2.9	27	77	12	69	50	6	0	43	1.26
50030656--50030693	19	2.0	20	85	15	53	57	2	2	36	1.26
50040347--50040389	18	2.4	18	88	0	59	41	44	2	11	1.53
50040497--50040572	27	2.8	27	91	0	116	25	6	22	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50040497--50040572	9	8.4	9	85	0	98	25	6	22	46	1.76
50042455--50042519	32	2.0	32	100	0	130	18	12	6	63	1.49
50043132--50043316	40	4.6	40	81	2	219	21	24	18	36	1.95
50043132--50043316	80	2.3	80	87	1	264	21	24	18	36	1.95
50044017--50044140	54	2.3	54	81	2	151	26	26	29	17	1.98
50046997--50047035	12	3.4	11	86	10	51	46	0	0	53	1.00
50046997--50047035	11	3.4	11	86	10	51	46	0	0	53	1.00
50054134--50054185	28	1.9	26	88	7	77	23	9	9	57	1.60
50054618--50054680	30	2.1	30	93	0	108	57	14	3	25	1.52
50054710--50054752	22	2.0	22	86	9	61	60	11	11	16	1.59
50054717--50054757	11	3.7	11	80	0	55	58	9	14	17	1.62
50054718--50054765	22	2.1	22	84	3	60	60	6	18	14	1.55
50058202--50058227	5	5.2	5	100	0	52	80	0	0	19	0.71
50059505--50059564	3	20.0	3	96	0	111	33	1	0	65	1.03
50061233--50061267	15	2.3	15	86	13	54	28	2	0	68	1.04
50063853--50063885	17	1.9	18	88	11	52	42	12	0	45	1.41
50068885--50068947	33	1.9	33	84	12	85	53	11	1	33	1.46
50069628--50069673	17	2.8	17	83	9	60	21	2	4	71	1.14
50069628--50069673	16	2.8	17	87	6	60	21	2	4	71	1.14
50086623--50086717	49	2.0	47	89	8	147	28	5	11	54	1.58
50099230--50099265	15	2.5	14	86	8	54	44	8	0	47	1.33
50115906--50115964	29	2.0	29	96	0	109	32	8	13	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50123722--50123863	33	4.2	33	68	26	109	33	30	21	14	1.92
50123740--50123793	27	2.0	28	89	10	85	29	33	24	12	1.92
50126562--50127133	114	5.1	113	77	10	376	32	20	20	26	1.97
50126821--50127007	105	1.8	100	85	5	257	35	17	18	28	1.94
50126697--50127121	215	2.0	216	84	4	561	32	19	20	27	1.97
50126922--50127241	114	2.8	112	82	7	342	29	20	21	28	1.98
50127377--50127462	39	2.2	39	89	4	129	25	2	23	48	1.62
50127453--50127502	22	2.3	22	82	6	66	24	0	38	38	1.56
50127476--50127512	14	2.6	14	86	0	56	24	0	37	37	1.56
50127415--50127665	121	2.0	124	81	7	289	23	1	33	41	1.66
50127656--50127693	14	2.7	14	87	0	58	23	0	44	31	1.54
50130884--50131021	66	2.1	66	95	0	249	42	18	23	15	1.89
50131011--50131060	21	2.4	21	89	0	82	36	18	44	2	1.61
50131384--50131721	43	7.8	43	78	7	290	28	19	25	26	1.99
50131371--50131721	85	4.0	85	78	9	352	29	19	25	26	1.98
50143619--50143648	11	2.7	11	89	0	51	76	0	0	23	0.78
50147150--50147218	29	2.3	29	82	2	84	49	10	11	28	1.72
50162626--50162650	13	1.9	13	100	0	50	56	8	16	20	1.65
50162669--50162731	20	3.1	20	64	28	51	39	11	4	44	1.61
50166703--50166727	13	1.9	13	100	0	50	56	8	16	20	1.65
50166746--50166808	20	3.1	20	64	28	51	39	11	4	44	1.61
50170066--50170274	92	2.3	91	86	5	278	45	3	3	46	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50170202--50170249	26	1.9	25	84	16	64	45	0	2	52	1.12
50170328--50170541	66	3.4	62	68	20	176	41	3	6	49	1.44
50170290--50170583	120	2.4	120	94	2	502	42	2	4	50	1.37
50170415--50170466	15	3.6	15	80	12	56	44	0	1	53	1.11
50170545--50170586	15	2.7	16	82	14	52	45	0	2	52	1.13
50170536--50170577	15	2.9	15	82	10	52	47	0	0	52	1.00
50170519--50170836	157	2.0	158	96	0	593	47	5	3	44	1.40
50170689--50170723	18	2.0	17	88	5	52	45	0	0	54	0.99
50170920--50170971	16	3.2	16	91	0	77	34	34	0	30	1.58
50172512--50172564	28	1.9	27	85	11	72	66	5	9	18	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203