genome.fa.s17.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  107  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33926408--33926448	21	2.0	21	85	9	57	80	0	19	0	0.71
33928898--33928945	16	3.2	15	85	5	53	56	2	4	37	1.30
33930434--33930949	87	5.9	87	90	0	818	23	23	23	29	1.99
33932625--33932689	18	3.4	19	81	14	80	7	7	7	76	1.15
33932636--33932708	12	6.0	12	79	6	67	9	4	9	76	1.13
33932614--33932706	24	3.8	24	74	16	75	9	6	9	74	1.23
33937477--33937522	3	15.3	3	82	8	58	60	0	2	36	1.09
33938804--33939140	45	7.5	45	84	2	399	29	16	25	28	1.97
33940172--33940563	108	3.6	109	90	1	621	30	17	18	33	1.94
33940172--33940563	217	1.8	215	90	2	633	30	17	18	33	1.94
33942154--33942186	15	2.1	16	94	5	59	45	0	12	42	1.41
33942224--33942267	18	2.6	17	82	10	54	52	0	4	43	1.22
33942337--33942389	6	9.2	6	76	15	58	39	0	13	47	1.43
33942316--33942372	24	2.3	24	84	6	69	42	0	17	40	1.49
33942305--33942372	26	2.8	24	76	8	73	41	0	17	41	1.50
33942519--33942583	3	21.7	3	78	12	71	63	3	1	32	1.19
33944980--33945049	36	1.9	37	94	2	124	45	1	2	50	1.25
33952013--33952052	21	1.9	21	89	0	62	52	5	20	22	1.65
33953905--33953958	21	2.6	21	90	0	90	25	7	37	29	1.83
33958231--33958272	20	2.1	20	82	8	50	66	2	7	23	1.28
33958337--33958369	16	2.0	17	88	5	50	45	6	6	42	1.53
33959603--33959645	20	2.1	21	83	12	54	4	18	51	25	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33960259--33961141	89	9.9	89	93	1	1459	27	24	17	30	1.97
33971933--33971974	20	2.1	20	82	8	50	66	2	7	23	1.28
33972039--33972071	16	2.0	17	88	5	50	45	6	6	42	1.53
33972819--33972847	6	4.8	6	100	0	58	86	0	0	13	0.58
33973306--33973348	20	2.1	21	83	12	54	4	18	51	25	1.66
33974211--33974256	23	2.0	23	83	4	58	32	0	4	63	1.14
33975936--33975977	12	3.5	12	75	12	50	23	9	2	64	1.35
33975932--33975983	24	2.2	24	100	0	104	25	7	5	61	1.45
33978703--33979089	194	2.0	193	98	0	747	31	17	24	26	1.97
33980887--33980921	17	2.1	17	100	0	70	17	34	17	31	1.93
33987267--33987294	6	4.7	6	100	0	56	17	0	0	82	0.68
33991859--33991899	19	2.2	19	86	0	55	73	4	2	19	1.13
33996651--33996737	45	1.9	45	92	0	147	45	18	13	21	1.84
34003226--34003292	18	3.6	18	70	16	55	10	23	1	64	1.34
34004400--34004433	9	3.7	9	96	4	59	17	0	8	73	1.08
34004399--34004434	10	3.7	10	92	7	65	16	0	8	75	1.04
34006585--34006631	20	2.3	21	89	7	71	68	0	2	29	1.02
34006928--34007042	28	3.9	29	78	12	92	34	3	0	60	1.19
34007222--34007395	89	1.9	90	83	5	228	36	8	15	39	1.77
34009656--34009701	19	2.3	21	88	7	69	80	6	4	8	1.01
34020858--34020928	23	3.3	20	79	14	72	47	1	0	50	1.09
34020907--34020957	18	2.7	19	81	6	59	52	0	1	45	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34021312--34021399	19	4.7	18	72	13	61	36	1	1	61	1.11
34021388--34021413	8	3.2	8	100	0	52	23	0	0	76	0.78
34021594--34021623	16	1.9	15	93	6	51	0	13	0	86	0.57
34022450--34022503	11	4.8	12	80	15	62	24	31	1	42	1.65
34022463--34022562	51	2.0	51	88	4	148	25	26	2	47	1.63
34023042--34023098	25	2.3	25	84	0	69	40	12	5	42	1.65
34023147--34023196	20	2.5	19	80	6	55	36	22	6	36	1.79
34023327--34023381	26	2.2	26	83	6	69	21	23	23	30	1.99
34023345--34023436	23	3.9	24	80	9	100	32	20	22	23	1.98
34034353--34034601	55	4.5	55	83	5	238	34	15	15	34	1.89
34034353--34034601	110	2.3	110	82	5	308	34	15	15	34	1.89
34045216--34045252	17	2.1	18	95	5	67	29	0	0	70	0.88
34049096--34049149	27	2.0	27	100	0	108	33	29	14	22	1.94
34051758--34051797	21	1.9	21	94	0	71	17	27	15	40	1.89
34053458--34053519	31	2.0	31	100	0	124	41	16	9	32	1.80
34059057--34059104	21	2.2	22	82	10	55	0	8	25	66	1.19
34059053--34059125	33	2.3	32	83	6	94	0	10	19	69	1.17
34059640--34059701	31	2.0	31	100	0	124	41	16	9	32	1.80
34062843--34063061	109	2.0	110	87	5	314	42	8	11	36	1.73
34067116--34067153	17	2.2	17	100	0	76	42	5	13	39	1.66
34069641--34069694	25	2.2	25	83	3	65	33	25	20	20	1.97
34069655--34069706	25	2.1	25	85	7	70	34	23	21	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34078252--34078577	132	2.5	133	85	5	430	31	20	22	24	1.98
34078590--34078685	44	2.2	44	86	0	129	27	19	26	27	1.99
34078987--34079017	6	5.0	6	96	4	53	80	0	0	19	0.71
34080515--34080544	11	2.7	11	100	0	60	33	0	0	66	0.92
34091464--34091680	108	2.0	108	93	1	373	17	15	29	37	1.91
34096738--34096765	14	2.0	14	100	0	56	35	14	7	42	1.73
34097379--34097418	20	2.0	20	85	9	55	25	30	0	45	1.54
34098819--34098860	8	5.1	8	88	2	57	61	0	30	7	1.22
34098819--34098860	16	2.6	16	96	3	75	61	0	30	7	1.22
34103142--34103168	7	3.9	7	100	0	54	59	0	0	40	0.98
34107736--34107792	25	2.3	24	73	8	60	36	1	8	52	1.43
34110971--34111013	17	2.7	15	75	25	52	2	30	37	30	1.70
34111099--34111125	6	4.5	6	100	0	54	51	0	0	48	1.00
34117239--34117281	13	3.1	14	84	12	54	60	0	0	39	0.97
34130519--34131153	318	2.0	318	99	0	1261	29	23	10	36	1.89
34131256--34131299	17	2.6	17	88	0	61	47	2	4	45	1.35
34132348--34132388	18	2.3	18	100	0	82	26	0	12	60	1.31
34136387--34136428	19	2.2	19	86	4	57	76	0	14	9	1.02
34138122--34138606	127	3.9	125	83	1	580	40	15	16	28	1.88
34146472--34146600	59	2.2	59	83	5	161	52	6	5	34	1.51
34148087--34148150	30	2.1	31	82	8	78	64	3	3	29	1.24
34161959--34162149	43	4.4	43	78	2	195	28	18	21	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34166349--34166383	5	6.8	5	96	3	61	17	2	0	80	0.84
34166329--34166377	15	3.0	16	88	8	64	18	0	4	77	0.92
34167368--34167392	10	2.5	10	100	0	50	52	0	8	40	1.31
34182536--34182583	21	2.3	21	88	0	69	20	20	35	22	1.96
34185021--34185058	2	19.0	2	100	0	76	0	50	0	50	1.00
34187616--34187649	17	2.0	17	88	0	50	70	0	0	29	0.87
34193486--34193546	30	2.0	30	93	0	104	26	3	14	55	1.55
34193668--34193701	12	2.8	12	90	0	50	67	0	0	32	0.91
34208540--34208704	47	3.5	46	83	4	179	41	15	13	29	1.85
34208585--34208702	22	5.1	22	74	18	96	44	15	12	27	1.82
34208560--34208691	25	5.6	24	72	17	107	43	15	14	26	1.86
34208631--34208743	22	5.2	22	68	23	96	45	13	10	30	1.77
34208675--34208752	39	2.0	39	100	0	156	46	12	7	33	1.71
34209551--34209647	28	3.5	27	76	9	97	29	28	9	31	1.88
34210644--34210708	32	2.0	32	96	0	121	38	20	3	38	1.68
34216523--34216581	18	3.3	18	66	17	50	13	10	28	47	1.75
34216464--34216579	36	3.2	35	80	8	144	18	12	25	44	1.83
34220835--34220930	48	2.0	48	89	4	149	36	22	11	29	1.89
34220942--34221011	26	2.7	26	93	0	122	27	21	28	22	1.99
34222484--34222513	15	2.0	15	93	0	51	23	16	20	40	1.91
34222800--34222825	13	2.0	13	100	0	52	46	0	30	23	1.53
34225334--34225383	20	2.5	20	76	0	64	52	2	2	44	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34225494--34225531	14	2.7	15	92	8	62	42	15	2	39	1.61
34229996--34230050	27	2.0	27	89	3	83	38	23	21	16	1.93
34239217--34239246	12	2.6	12	94	5	53	70	0	6	23	1.11
34241171--34241218	24	2.0	24	91	0	78	58	12	2	27	1.46
34242024--34242048	5	5.0	5	100	0	50	40	20	20	20	1.92
34242219--34242256	19	2.0	20	84	5	51	36	21	5	36	1.76
34250074--34250117	18	2.4	18	76	3	52	45	2	15	36	1.59
34267526--34267569	21	2.1	21	82	0	52	22	20	40	15	1.90
34269301--34269361	25	2.5	25	76	12	72	27	3	1	67	1.16
34269280--34269352	32	2.3	32	83	4	85	30	6	1	61	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203