genome.fa.s17.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  155  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49257672--49257763	46	2.0	44	87	4	130	28	4	29	38	1.76
49257675--49257767	44	2.1	46	89	4	145	29	4	29	37	1.76
49257675--49257779	39	2.5	43	81	10	119	29	3	30	36	1.75
49257938--49258069	18	7.8	18	72	13	84	56	3	0	40	1.20
49257972--49258182	63	3.4	61	71	20	161	51	3	1	43	1.28
49258056--49258271	101	2.1	101	92	0	351	50	3	1	44	1.28
49270015--49270072	27	2.1	30	81	18	72	20	5	5	68	1.28
49270092--49270125	16	2.2	16	89	5	52	20	0	5	73	1.04
49270188--49270218	15	2.1	15	93	0	53	19	9	6	64	1.45
49270273--49270806	107	5.0	107	88	2	734	30	14	17	37	1.90
49272909--49272939	15	2.1	15	93	0	53	22	0	0	77	0.77
49273120--49273157	13	2.9	14	88	7	53	5	13	5	76	1.13
49274074--49274145	36	2.0	36	84	10	94	38	12	2	45	1.56
49274327--49274386	3	19.7	3	93	3	102	31	1	1	65	1.13
49276179--49276253	19	3.8	19	87	6	114	34	10	18	36	1.86
49286482--49286641	42	3.8	42	80	14	154	31	24	15	29	1.95
49286482--49286641	84	1.9	83	81	12	193	31	24	15	29	1.95
49288865--49288898	16	2.1	17	94	5	61	73	8	5	11	1.24
49290836--49290868	17	1.9	17	93	0	57	21	0	36	42	1.53
49291801--49291838	13	2.7	14	84	8	51	15	7	13	63	1.51
49292150--49292773	312	2.0	312	99	0	1230	30	14	19	36	1.91
49296403--49296445	22	2.0	22	86	4	61	34	0	11	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49301211--49301283	27	2.8	25	74	17	67	39	0	4	56	1.19
49303727--49303754	3	9.3	3	100	0	56	67	0	0	32	0.91
49313653--49313722	31	2.3	31	85	11	92	52	12	1	32	1.48
49313653--49313722	29	2.3	31	85	7	90	52	12	1	32	1.48
49313965--49314018	19	2.8	20	78	10	60	57	1	5	35	1.33
49314635--49314664	12	2.5	12	94	0	51	73	0	0	26	0.84
49316990--49317028	20	2.0	20	84	0	51	25	2	2	69	1.14
49318219--49318243	10	2.5	10	100	0	50	48	8	24	20	1.76
49329075--49329102	3	9.3	3	100	0	56	64	0	35	0	0.94
49329519--49329556	17	2.2	17	90	0	58	34	10	18	36	1.85
49338272--49338355	41	2.0	41	100	0	168	33	16	16	33	1.92
49344928--49344965	16	2.3	17	86	4	51	39	0	0	60	0.97
49345319--49345354	6	6.0	6	100	0	72	33	66	0	0	0.92
49365932--49365956	8	3.1	8	100	0	50	52	0	0	48	1.00
49367175--49367235	24	2.5	24	84	12	72	13	8	6	72	1.28
49368537--49368591	28	1.9	28	85	3	74	47	9	9	34	1.67
49368548--49368617	28	2.4	28	83	7	86	42	7	11	38	1.68
49385077--49385124	25	2.0	25	84	11	66	33	2	0	64	1.05
49404157--49404190	16	2.1	16	88	0	50	29	5	0	64	1.17
49409253--49409313	6	9.5	6	80	15	52	78	13	0	8	0.95
49409255--49409302	21	2.2	22	88	3	71	81	12	0	6	0.87
49409253--49409313	13	4.6	13	82	9	52	78	13	0	8	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49409279--49409332	6	8.7	6	87	6	63	68	11	5	14	1.37
49409317--49409368	27	1.9	27	84	0	68	73	0	23	3	1.00
49410957--49411201	87	2.8	87	90	0	400	28	21	24	26	1.99
49411448--49411606	44	3.6	45	76	3	135	30	20	22	25	1.98
49414894--49414942	17	2.9	17	90	0	71	22	28	38	10	1.87
49420671--49420725	25	2.3	24	82	14	69	21	18	9	50	1.74
49420673--49420738	24	2.7	23	79	11	62	25	18	7	48	1.74
49424492--49424561	19	3.7	19	77	7	79	64	2	1	31	1.17
49424493--49424572	38	2.1	37	88	2	115	63	2	1	32	1.15
49424477--49424572	9	10.4	9	70	12	70	63	3	2	31	1.21
49427622--49427882	46	5.7	46	93	1	429	33	15	22	28	1.94
49435612--49435806	49	4.0	49	93	0	300	32	29	13	24	1.94
49437059--49437260	46	4.5	46	94	1	347	26	23	15	34	1.95
49449541--49449620	31	2.6	31	91	0	133	42	7	15	35	1.75
49452791--49453155	200	1.8	200	96	1	678	25	18	27	28	1.98
49455437--49455469	16	2.1	16	94	0	57	60	0	33	6	1.21
49457627--49457733	20	5.3	20	61	8	56	21	29	17	30	1.96
49457609--49457896	40	7.2	40	83	0	306	23	29	17	30	1.97
49457609--49457889	120	2.3	120	86	2	368	23	29	17	30	1.97
49461507--49461536	11	2.6	11	94	5	51	60	0	3	36	1.14
49461480--49461553	37	2.0	37	89	7	114	64	0	1	33	1.02
49466852--49466895	18	2.5	17	82	17	54	36	2	4	56	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49470784--49470826	22	2.0	22	85	0	59	69	2	9	18	1.26
49471211--49471256	17	2.7	17	82	0	56	41	0	2	56	1.11
49471243--49471318	11	7.3	11	73	16	63	39	1	0	59	1.06
49471280--49471329	10	5.1	10	81	13	68	46	0	0	54	1.00
49471271--49471329	18	3.1	19	81	13	77	42	0	0	57	0.98
49485450--49485485	18	2.1	16	90	10	54	69	5	11	13	1.34
49497986--49498017	5	6.4	5	92	0	55	18	3	0	78	0.89
49501309--49501373	33	2.0	32	93	0	103	41	12	21	23	1.86
49510388--49510711	44	7.5	43	73	8	196	30	21	20	27	1.98
49510388--49510809	218	2.0	214	81	6	485	31	21	21	25	1.98
49512587--49512622	3	12.0	3	93	0	63	33	2	0	63	1.08
49519830--49519855	12	2.2	12	100	0	52	0	23	34	42	1.54
49521890--49521922	4	8.0	4	96	3	57	27	48	0	24	1.51
49527433--49527475	12	3.5	12	81	15	52	76	2	20	0	0.89
49528387--49528480	40	2.4	40	80	5	113	31	19	21	27	1.97
49532250--49532308	18	3.1	20	78	11	79	52	0	1	45	1.10
49532470--49532518	24	2.0	24	88	7	73	18	40	4	36	1.70
49539367--49539497	45	2.9	45	77	6	106	45	13	18	22	1.84
49546442--49546554	42	2.7	42	80	5	138	47	17	19	15	1.82
49546423--49546550	21	6.2	20	68	5	69	46	18	19	15	1.85
49549112--49549172	26	2.3	26	94	0	104	44	13	6	36	1.69
49555205--49555229	7	3.6	7	100	0	50	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49557700--49557742	20	2.2	19	84	12	52	41	9	9	39	1.69
49557689--49557855	80	2.1	80	81	6	187	40	8	10	40	1.70
49557947--49557989	21	2.2	19	87	8	59	53	2	11	32	1.50
49557999--49558348	40	8.8	40	76	6	271	36	6	16	41	1.73
49557709--49558348	20	31.6	20	68	12	182	38	6	15	39	1.74
49558421--49558495	20	3.8	20	78	3	80	37	4	18	40	1.70
49558383--49558495	60	1.9	60	81	7	140	40	4	18	36	1.71
49558260--49558623	147	2.5	146	80	7	389	39	4	17	39	1.71
49558531--49558585	20	2.8	19	75	8	56	43	7	10	38	1.68
49558571--49558662	40	2.3	40	79	7	107	40	6	17	35	1.75
49558589--49558664	20	3.8	20	80	3	100	36	7	17	38	1.79
49558571--49558664	39	2.4	40	82	5	111	39	7	17	36	1.77
49558758--49558839	40	2.0	40	81	4	94	43	2	14	39	1.59
49559129--49559181	20	2.7	20	81	0	70	47	3	9	39	1.54
49559552--49559591	15	2.7	15	96	0	71	12	40	5	42	1.64
49560914--49561085	46	3.7	46	80	1	157	32	18	20	27	1.96
49562759--49562801	20	2.1	21	86	4	61	37	0	4	58	1.19
49563056--49563110	19	2.7	20	80	13	67	41	3	1	52	1.29
49571401--49571462	31	2.0	31	84	3	81	35	4	8	51	1.53
49573003--49573514	251	2.0	251	95	1	920	42	22	6	28	1.78
49574586--49574646	21	2.9	21	92	0	104	34	18	31	16	1.93
49576867--49576895	5	5.8	5	100	0	58	82	0	17	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49584856--49585017	46	3.6	45	93	2	263	31	16	24	27	1.96
49586550--49586888	169	2.0	169	95	0	615	30	26	13	30	1.94
49590067--49590184	40	2.9	41	80	12	136	22	18	23	35	1.96
49590067--49590153	41	2.1	41	89	6	133	22	17	24	35	1.95
49596505--49596529	9	2.8	9	100	0	50	24	12	20	44	1.85
49600184--49600243	30	2.0	30	93	6	104	33	33	18	15	1.92
49613721--49613800	40	2.0	41	87	7	119	55	6	0	38	1.25
49615687--49615862	88	2.0	88	98	0	343	21	21	15	41	1.90
49616888--49616985	49	2.0	49	97	0	187	48	9	15	26	1.74
49622170--49622219	20	2.5	20	90	0	73	50	20	22	8	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203