genome.fa.s17.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  132  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41968793--41969279	266	1.8	268	93	1	845	36	8	6	48	1.59
41969207--41969356	30	4.8	30	72	14	99	44	13	5	37	1.66
41970039--41970192	43	3.6	43	83	0	191	25	16	29	27	1.97
41972047--41972131	43	2.0	42	81	6	100	27	24	18	29	1.98
41976283--41976315	16	2.1	16	94	0	57	36	9	33	21	1.85
41976543--41976577	18	2.0	17	88	5	52	54	0	0	45	0.99
41976523--41977136	120	5.1	120	94	0	967	50	5	1	42	1.35
41976717--41976763	24	2.0	24	84	15	64	51	2	4	42	1.33
41976781--41976817	16	2.2	17	86	13	51	54	0	2	43	1.14
41976873--41976913	13	3.2	12	80	12	55	58	0	0	41	0.98
41976529--41977135	242	2.5	240	91	0	962	50	4	1	42	1.35
41978858--41978887	13	2.3	13	94	0	51	30	13	6	50	1.67
41979038--41979076	19	2.1	19	95	0	69	41	15	17	25	1.89
41980107--41980143	19	1.9	19	94	0	65	37	21	29	10	1.88
41980169--41980193	5	5.0	5	100	0	50	80	0	20	0	0.72
41984035--41984072	15	2.6	15	83	4	51	47	31	0	21	1.51
41984028--41984077	21	2.3	21	80	10	57	48	28	0	24	1.52
41984412--41984892	40	12.1	40	76	7	462	28	22	20	29	1.98
41984412--41984748	120	2.8	120	90	0	521	28	22	20	28	1.98
41984801--41984892	41	2.3	40	86	1	130	22	20	25	31	1.98
41989935--41990024	20	4.4	20	77	14	96	43	0	4	52	1.21
41995803--41995827	13	1.9	13	100	0	50	40	20	8	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41998157--41998210	6	9.0	6	97	0	99	48	0	35	16	1.47
42007110--42007144	15	2.4	15	90	4	54	48	0	8	42	1.33
42027309--42027367	22	2.7	21	74	10	55	62	3	0	33	1.12
42029781--42029840	30	2.0	31	96	3	113	26	18	6	48	1.72
42031171--42031235	30	2.2	30	97	0	121	32	0	30	36	1.58
42044824--42044880	15	3.5	15	69	17	51	45	0	3	50	1.18
42044914--42044952	13	2.9	14	92	7	64	46	0	0	53	1.00
42057525--42057702	27	6.6	27	84	3	205	29	28	15	26	1.96
42057546--42057701	82	1.9	81	88	3	233	29	28	15	26	1.96
42059911--42059946	13	2.6	14	86	13	56	27	27	0	44	1.55
42060441--42060536	20	4.8	21	82	8	87	41	21	28	8	1.82
42060463--42060536	20	3.7	20	88	0	103	41	22	27	8	1.82
42065835--42065881	19	2.5	19	100	0	94	31	21	0	46	1.51
42069089--42069215	29	4.4	29	78	4	121	24	16	22	36	1.94
42069400--42069467	16	4.2	16	96	0	118	27	0	36	35	1.58
42069448--42069542	45	2.1	44	88	1	136	34	5	27	32	1.79
42069704--42069738	18	2.0	17	88	5	52	54	0	0	45	0.99
42069662--42069734	27	2.7	27	76	8	76	52	2	0	45	1.15
42069851--42069885	18	2.0	17	88	5	52	54	0	0	45	0.99
42069623--42069897	147	1.9	149	96	1	509	46	3	2	47	1.33
42069961--42069992	16	1.9	17	93	6	57	46	0	0	53	1.00
42070022--42070229	91	2.3	91	85	4	258	46	3	4	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42070743--42070772	12	2.5	12	94	0	51	43	20	23	13	1.86
42071032--42071062	14	2.2	14	100	0	62	45	29	6	19	1.75
42075279--42075323	19	2.6	17	86	10	56	62	0	0	37	0.96
42075290--42075333	19	2.2	20	92	4	72	65	4	0	29	1.12
42076278--42076312	18	1.9	18	94	0	61	68	0	0	31	0.90
42080308--42080337	9	3.3	9	90	0	51	23	13	23	40	1.90
42080391--42080427	9	4.1	9	92	0	65	45	13	10	29	1.77
42080641--42080700	30	2.0	31	86	3	86	20	40	0	40	1.52
42082483--42082554	29	2.5	29	76	10	67	36	6	8	48	1.60
42083108--42083166	30	1.9	30	86	3	82	35	15	8	40	1.77
42087912--42087936	13	1.9	13	100	0	50	32	16	16	36	1.90
42099788--42099869	40	2.0	40	97	0	155	35	20	18	25	1.95
42106456--42106525	35	2.0	35	88	2	104	41	17	20	21	1.90
42109078--42109137	23	2.6	22	82	7	66	41	8	8	41	1.65
42111022--42111064	21	2.1	20	82	4	50	30	0	13	55	1.39
42123025--42123150	20	6.3	20	71	3	110	36	19	30	14	1.91
42123045--42123150	40	2.7	39	89	0	158	37	18	29	14	1.90
42123020--42123134	60	1.9	60	83	0	149	37	17	31	13	1.89
42129465--42129558	46	2.0	46	93	0	161	31	27	3	37	1.73
42131426--42131519	46	2.0	46	93	0	161	31	27	3	37	1.73
42132545--42132582	19	2.1	18	85	14	51	52	10	0	36	1.36
42134673--42134721	24	2.0	24	88	0	71	22	22	8	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42142915--42142958	20	2.2	20	87	0	61	52	18	18	11	1.74
42142935--42143038	40	2.6	40	83	3	129	38	14	27	19	1.90
42145281--42145326	21	2.2	21	92	0	74	21	17	39	21	1.93
42147129--42147189	30	2.0	30	96	0	113	45	16	14	22	1.84
42156776--42156831	19	2.9	19	91	0	85	42	16	7	33	1.75
42158382--42158413	16	2.0	16	93	0	55	25	15	0	59	1.36
42160456--42160537	42	2.0	42	83	9	105	30	23	14	31	1.94
42163329--42163360	16	2.0	16	93	0	55	25	15	0	59	1.36
42163588--42163778	51	3.8	51	73	9	185	30	26	17	25	1.97
42163586--42163770	101	1.8	102	87	5	277	30	25	18	24	1.98
42168056--42168114	22	2.7	21	75	10	55	44	15	5	35	1.68
42168841--42168958	44	2.7	44	85	5	141	27	24	18	28	1.98
42168924--42169100	34	4.9	34	83	15	230	27	26	21	24	1.99
42168880--42169181	78	3.9	78	80	15	333	28	27	18	25	1.98
42168958--42169229	44	6.6	44	82	13	327	28	27	19	25	1.98
42168924--42169149	112	2.0	112	93	1	391	27	26	19	25	1.99
42170501--42170529	6	4.8	6	100	0	58	0	13	0	86	0.58
42171348--42171413	25	2.6	25	83	9	71	56	6	18	19	1.62
42175416--42175458	23	1.9	22	90	4	68	55	2	6	34	1.39
42175547--42175622	36	2.1	36	80	11	84	51	1	9	38	1.42
42176115--42176181	22	3.0	22	82	6	73	38	16	7	37	1.77
42176128--42176188	22	2.7	22	89	2	86	34	18	9	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42191356--42191421	20	3.3	20	89	0	105	9	28	19	42	1.82
42191360--42191550	40	4.8	40	86	1	249	17	25	18	37	1.93
42192573--42192618	19	2.4	19	89	7	67	23	17	2	56	1.52
42198927--42199043	40	2.9	40	79	0	126	19	25	17	36	1.94
42215602--42215786	79	2.3	82	84	7	238	25	27	22	24	2.00
42215583--42215786	40	5.1	40	82	8	238	25	27	22	25	2.00
42225569--42225604	12	3.0	12	83	0	54	16	16	0	66	1.25
42234536--42234579	16	2.6	16	82	7	52	2	15	0	81	0.78
42237479--42237508	15	1.9	16	93	6	53	56	0	0	43	0.99
42240069--42240109	20	2.0	20	90	0	64	9	24	19	46	1.80
42240798--42240844	21	2.3	21	92	3	78	10	14	23	51	1.74
42243206--42243284	41	1.9	42	86	2	115	16	37	25	20	1.93
42243323--42243445	42	2.9	42	75	0	129	21	30	22	26	1.99
42243471--42243551	42	1.9	42	89	0	126	14	37	28	19	1.92
42251117--42251480	49	7.6	49	93	1	546	35	7	28	28	1.84
42267734--42268065	171	2.0	169	94	1	583	38	8	35	17	1.80
42269161--42269225	27	2.4	27	87	2	87	33	12	10	43	1.77
42272845--42272876	6	5.7	6	85	14	50	15	0	0	84	0.63
42272846--42272876	11	2.8	11	100	0	62	16	0	0	83	0.64
42274017--42274068	3	17.7	3	80	4	61	30	0	3	65	1.10
42280433--42280533	51	2.0	51	88	0	148	30	14	24	29	1.95
42280515--42280554	21	1.9	21	85	10	55	40	5	32	22	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42280545--42280683	51	2.7	50	81	4	161	31	21	21	25	1.98
42280430--42280865	123	3.4	123	75	10	415	31	16	24	27	1.97
42280685--42280798	51	2.2	51	85	0	147	35	14	20	30	1.92
42280872--42281481	89	6.8	88	80	5	361	32	18	20	29	1.96
42280873--42281348	44	10.6	44	75	4	349	31	17	21	28	1.96
42280918--42281158	133	1.8	132	80	2	295	32	18	19	28	1.96
42281237--42281396	51	3.3	51	76	10	206	33	17	20	28	1.95
42281098--42281441	96	3.7	96	85	4	406	33	18	20	28	1.96
42282993--42283044	3	17.7	3	80	4	61	30	0	3	65	1.10
42285282--42285318	9	4.1	9	92	0	65	45	13	10	29	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203