genome.fa.s17.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  175  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55643335--55643374	21	1.9	21	85	10	55	2	47	17	32	1.61
55648835--55648995	9	18.3	9	70	11	93	33	0	19	46	1.55
55648859--55648942	36	2.4	34	88	4	123	33	1	19	46	1.57
55648885--55649015	43	3.0	43	93	2	208	33	0	17	48	1.47
55652474--55652649	46	3.8	46	79	12	216	20	21	29	28	1.98
55652471--55652642	93	1.8	93	96	0	317	20	21	29	27	1.98
55662624--55662735	21	5.0	21	68	27	63	23	0	30	46	1.53
55662637--55662799	68	2.5	63	81	13	163	23	1	30	45	1.61
55663878--55663937	28	2.2	28	88	5	88	38	25	23	13	1.91
55666614--55666845	113	2.1	113	84	3	297	25	21	21	31	1.98
55666663--55666910	113	2.2	113	79	5	243	26	19	22	32	1.97
55670002--55670201	81	2.5	80	85	4	267	29	23	8	39	1.83
55670002--55670195	27	7.2	27	85	1	201	29	23	7	39	1.83
55670231--55670301	27	2.6	28	82	6	92	43	25	4	26	1.73
55670405--55670478	27	2.7	27	76	12	71	37	20	20	21	1.94
55670418--55670482	27	2.4	27	82	5	78	35	18	24	21	1.96
55671294--55671375	25	3.3	25	83	5	87	26	21	24	26	2.00
55671318--55671389	25	2.9	24	85	8	83	26	19	25	29	1.99
55671510--55671601	42	2.2	42	96	3	168	32	15	20	31	1.94
55671625--55671739	31	3.7	31	90	1	178	30	16	24	28	1.96
55680450--55680666	47	4.6	47	91	1	328	34	10	28	27	1.89
55680522--55680644	22	5.3	22	64	27	67	34	12	28	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55680899--55681007	37	2.9	37	94	0	191	22	19	31	26	1.98
55682077--55682294	40	5.5	40	82	7	248	27	26	21	24	1.99
55688504--55688731	40	5.7	40	95	0	402	21	27	21	30	1.98
55693523--55693749	47	4.7	47	91	5	357	33	7	29	29	1.86
55701616--55701719	42	2.5	42	85	0	127	20	22	33	24	1.97
55705013--55705186	56	3.1	56	99	0	339	45	9	22	22	1.80
55706612--55706796	40	4.6	39	84	4	212	24	22	27	25	2.00
55706612--55706796	79	2.3	82	84	7	229	24	22	27	25	2.00
55706612--55706829	79	2.7	79	81	7	203	26	21	26	25	1.99
55711328--55711641	48	6.5	48	87	2	389	26	17	28	27	1.98
55711328--55711597	144	1.9	144	91	0	441	27	17	28	26	1.98
55711328--55711641	144	2.2	144	87	1	432	26	17	28	27	1.98
55713479--55713514	16	2.2	16	90	0	54	58	16	19	5	1.58
55715941--55716165	49	4.5	49	85	2	288	24	18	28	28	1.98
55715941--55716165	99	2.3	101	84	2	285	24	18	28	28	1.98
55720190--55720287	27	3.7	27	75	14	107	34	23	22	19	1.96
55729870--55730014	40	3.6	40	85	4	184	25	24	26	24	2.00
55732149--55732195	3	16.0	3	91	4	78	63	0	2	34	1.06
55732152--55732195	23	1.9	23	95	0	79	63	0	2	34	1.07
55733554--55733632	37	2.1	37	90	0	122	25	31	18	24	1.98
55733766--55734526	51	15.3	51	90	6	1111	31	27	8	33	1.86
55733766--55734526	98	7.7	100	91	4	1113	31	27	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55734202--55734318	47	2.6	40	86	11	99	27	29	11	31	1.92
55738644--55738825	51	3.7	50	74	12	162	28	22	18	30	1.97
55738589--55738880	97	3.0	96	79	4	318	27	22	17	32	1.96
55738606--55739036	44	9.3	45	69	12	194	28	24	16	30	1.97
55738787--55739038	133	1.9	133	82	3	319	30	25	15	28	1.96
55739156--55739382	111	2.0	111	98	0	436	28	14	16	40	1.88
55750126--55750167	19	2.2	19	100	0	84	33	28	19	19	1.96
55750746--55750786	3	14.0	3	87	5	57	63	4	0	31	1.15
55752062--55752093	14	2.4	13	94	5	55	84	0	9	6	0.78
55764562--55764667	53	2.0	53	98	0	203	28	23	7	40	1.82
55766956--55767012	30	1.9	29	89	10	89	43	5	22	28	1.75
55772459--55772488	16	1.9	15	93	6	51	33	23	0	43	1.54
55772700--55772980	50	5.6	50	81	2	276	31	27	16	24	1.97
55777406--55778485	47	22.9	47	97	0	1953	35	10	26	28	1.89
55778700--55778849	47	3.2	47	86	0	192	32	10	31	26	1.89
55778393--55779007	308	2.0	308	98	0	1185	28	16	27	27	1.97
55778968--55779046	37	2.1	37	90	0	122	24	18	31	25	1.98
55784842--55784939	50	2.0	50	95	0	178	34	13	8	43	1.73
55787214--55787252	21	1.9	20	94	5	69	33	10	25	30	1.89
55789914--55789942	14	2.1	14	100	0	58	34	13	6	44	1.71
55790020--55790058	21	1.9	20	89	5	60	35	10	23	30	1.88
55790049--55790195	73	2.0	73	97	0	276	27	21	5	46	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55790245--55790283	20	2.0	20	94	0	69	23	0	7	69	1.14
55790295--55790361	16	4.6	15	71	22	54	55	0	0	44	0.99
55790322--55790365	11	4.2	11	80	11	56	59	0	0	40	0.98
55790322--55790365	20	2.3	19	85	14	63	59	0	0	40	0.98
55796395--55796438	22	2.0	22	95	0	79	54	4	20	20	1.62
55798663--55798706	21	2.1	21	83	8	54	63	2	9	25	1.35
55800795--55800838	22	2.0	22	100	0	88	54	4	22	18	1.61
55802617--55802654	20	1.9	20	100	0	76	65	10	7	15	1.45
55803070--55803113	21	2.1	21	83	8	54	63	2	9	25	1.35
55812604--55812655	22	2.4	22	83	6	61	25	23	25	26	2.00
55813451--55813607	73	2.2	71	80	8	183	34	4	11	49	1.59
55813868--55813976	54	2.0	54	96	3	202	27	25	13	33	1.94
55813922--55813996	30	2.5	30	75	0	78	29	26	14	29	1.95
55814480--55814504	13	1.9	13	100	0	50	16	32	16	36	1.90
55823024--55823088	30	2.2	30	94	0	112	24	27	29	18	1.98
55824696--55824888	105	1.8	105	80	4	228	25	23	21	29	1.99
55825609--55825718	39	2.8	40	91	5	172	32	12	24	30	1.92
55831511--55831684	91	1.9	91	85	2	242	23	17	18	40	1.91
55833287--55833312	12	2.2	12	100	0	52	50	7	0	42	1.31
55833797--55833974	27	6.6	27	83	3	196	26	14	28	30	1.95
55833798--55833953	82	1.9	81	88	3	233	26	15	28	29	1.96
55836745--55836769	12	2.1	12	100	0	50	32	20	24	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55841630--55841779	34	4.4	34	91	3	239	18	16	36	29	1.92
55843107--55843422	49	6.6	45	70	15	165	28	19	27	23	1.99
55843107--55843422	94	3.3	93	79	6	276	28	19	27	23	1.99
55846266--55846400	41	3.2	42	67	11	114	25	25	17	31	1.97
55846264--55846441	84	2.1	83	85	5	243	28	26	17	27	1.98
55848287--55848316	15	2.1	15	93	6	53	36	26	6	30	1.82
55851428--55851517	41	2.2	41	79	0	108	22	15	37	24	1.93
55852522--55852570	24	2.0	24	96	0	89	12	26	30	30	1.92
55856454--55856629	46	3.8	46	74	12	180	21	21	28	28	1.98
55856451--55856622	93	1.8	93	92	0	290	22	21	28	27	1.99
55859553--55859632	15	5.4	15	77	7	83	10	18	13	57	1.64
55859544--55859631	30	3.0	30	80	11	92	10	18	15	55	1.68
55861822--55861909	27	3.3	26	89	7	131	38	23	23	13	1.91
55862010--55862085	26	2.8	27	88	4	100	31	13	21	34	1.91
55863528--55863611	26	3.2	26	96	0	150	36	25	4	33	1.77
55864077--55864233	68	2.3	68	82	5	185	25	14	18	42	1.88
55870761--55870930	84	2.0	84	95	0	304	41	15	25	17	1.89
55871092--55871170	39	2.0	39	97	0	149	34	6	25	34	1.81
55871211--55871422	40	5.3	40	88	3	259	24	20	26	28	1.99
55875302--55875421	60	2.0	60	95	0	213	30	15	23	30	1.95
55879479--55879697	40	5.5	40	85	4	291	23	21	28	26	1.99
55889206--55889264	17	3.6	17	73	13	70	13	35	40	10	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55889204--55889265	31	2.0	31	93	0	106	14	33	40	11	1.82
55896301--55896562	39	6.7	40	87	7	328	25	22	27	24	2.00
55896356--55896587	78	2.9	79	87	5	276	26	21	26	25	1.99
55900745--55900894	78	1.9	78	95	0	273	27	19	10	43	1.82
55901335--55901519	40	4.7	40	79	6	198	25	26	23	24	2.00
55901335--55901519	79	2.3	80	78	8	198	25	26	23	24	2.00
55919687--55919721	17	2.1	17	89	5	54	5	14	0	80	0.89
55919686--55919740	30	1.9	27	85	10	74	9	12	1	76	1.10
55930110--55930149	21	1.9	21	100	0	80	47	7	25	20	1.75
55933081--55933123	20	2.2	20	100	0	86	25	32	0	41	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203