genome.fa.s17.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  17  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5518649--5518858	40	5.3	39	87	5	233	24	21	28	25	1.99
5518596--5518858	120	2.2	120	81	4	300	25	21	27	25	1.99
5518649--5518893	80	3.1	80	81	3	228	25	21	28	24	1.99
5526600--5526969	40	9.3	39	92	3	517	24	20	28	26	1.99
5526547--5526969	80	5.3	80	88	3	543	24	20	28	26	1.99
5526600--5526969	120	3.1	120	92	1	573	24	20	28	26	1.99
5535006--5535118	43	2.6	43	77	5	122	28	13	23	35	1.92
5542683--5542864	79	2.3	81	83	9	223	25	27	21	25	2.00
5542683--5542864	40	4.6	40	82	9	205	25	27	21	25	2.00
5550619--5550880	39	6.7	40	88	7	337	24	27	22	25	2.00
5558467--5558520	27	2.0	27	100	0	108	33	37	3	25	1.74
5565076--5565133	28	2.1	28	100	0	116	25	34	13	25	1.93
5565350--5565384	16	2.2	16	89	0	52	11	17	25	45	1.81
5577707--5577927	40	5.6	40	83	2	250	25	23	26	24	2.00
5580829--5581060	47	4.9	47	91	0	365	33	8	29	28	1.87
5582279--5582359	41	2.0	41	97	0	153	30	2	20	45	1.64
5582475--5583460	40	24.6	40	97	0	1830	20	22	31	25	1.98
5586958--5587057	50	2.0	50	92	0	164	29	19	21	31	1.97
5588986--5589123	70	2.0	70	92	0	231	33	23	10	32	1.88
5601627--5601663	20	1.9	20	88	5	58	40	8	2	48	1.47
5609609--5609784	46	3.7	45	76	11	174	22	19	28	29	1.98
5609599--5609777	97	1.8	97	90	2	288	23	19	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5616157--5616263	27	4.0	27	88	0	151	35	18	18	27	1.95
5616249--5616670	27	15.7	27	79	5	295	40	19	8	31	1.81
5617385--5617432	22	2.2	22	92	0	78	10	18	25	45	1.81
5618523--5618775	27	9.4	27	86	0	299	35	18	20	24	1.95
5618523--5618775	81	3.1	80	89	2	380	35	18	20	24	1.95
5618916--5619036	54	2.3	52	81	2	125	20	20	20	38	1.94
5618916--5619011	27	3.6	27	82	0	111	20	21	20	36	1.95
5618999--5619046	25	1.9	25	91	0	78	18	16	22	41	1.90
5621527--5621627	50	2.0	50	98	0	193	11	27	16	43	1.83
5622810--5622875	34	2.0	34	81	3	80	22	24	24	28	1.99
5628554--5628623	6	11.5	6	90	3	95	77	1	4	17	1.01
5629548--5629577	14	2.1	15	93	6	53	63	13	10	13	1.52
5634400--5634523	59	2.1	60	81	4	144	25	15	8	50	1.72
5635175--5635242	35	1.9	35	96	0	127	42	8	16	32	1.79
5635182--5635237	17	3.2	17	69	14	51	44	7	14	33	1.72
5637453--5637486	17	2.0	17	88	0	50	47	5	2	44	1.42
5639435--5640190	376	2.0	376	99	0	1503	31	18	13	37	1.89
5643078--5643103	6	4.3	6	100	0	52	50	0	0	50	1.00
5643184--5643232	19	2.5	20	80	12	57	63	0	0	36	0.95
5645797--5645836	21	2.0	21	85	5	55	32	2	5	60	1.32
5646057--5646094	14	2.8	13	82	17	51	78	0	10	10	0.95
5650422--5650473	16	3.2	16	91	0	77	28	0	34	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5650454--5650548	45	2.1	44	86	1	127	34	5	26	33	1.79
5650710--5650744	18	2.0	17	88	5	52	54	0	0	45	0.99
5650668--5650740	27	2.7	27	76	8	76	52	2	0	45	1.15
5650629--5650900	144	1.9	147	94	3	487	46	3	2	47	1.34
5650854--5650888	18	2.0	17	88	5	52	54	0	0	45	0.99
5650869--5651056	61	3.1	61	68	19	185	49	5	2	42	1.41
5650663--5650946	144	1.9	143	82	4	352	47	4	3	44	1.40
5650832--5651129	120	2.5	120	92	3	492	50	4	3	42	1.37
5650953--5650998	15	3.0	16	78	9	60	58	0	0	41	0.98
5650947--5651140	54	3.4	54	68	22	144	53	3	3	40	1.32
5652965--5653012	24	2.0	24	84	8	62	62	10	6	20	1.49
5665260--5665446	103	1.8	104	89	1	295	30	16	16	36	1.91
5681641--5681691	17	3.0	17	88	5	77	33	41	7	17	1.79
5682549--5682723	21	8.4	21	66	3	93	45	17	21	16	1.86
5682505--5682678	42	4.1	42	83	1	197	44	18	21	14	1.86
5683636--5683661	2	13.0	2	100	0	52	50	0	0	50	1.00
5689895--5689927	3	11.3	3	93	6	59	69	30	0	0	0.88
5701302--5701379	39	2.0	38	90	2	120	23	19	20	35	1.94
5702889--5702941	27	2.0	27	92	0	88	28	28	24	18	1.98
5702856--5703119	102	2.6	104	89	3	399	29	29	20	20	1.98
5703447--5703511	30	2.2	29	81	8	76	30	27	6	35	1.81
5703454--5703511	30	1.9	30	85	0	80	31	24	6	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5716786--5716829	17	2.6	18	78	10	56	47	0	9	43	1.35
5720611--5720636	2	13.0	2	100	0	52	50	0	0	50	1.00
5721367--5721475	57	1.9	57	88	7	168	30	19	27	22	1.98
5721606--5721733	67	1.9	67	93	0	220	23	17	30	28	1.97
5727735--5727820	21	4.1	21	69	8	59	43	18	20	17	1.89
5727706--5727809	42	2.5	42	87	0	136	39	19	23	18	1.92
5740510--5740539	7	4.3	7	100	0	60	33	13	13	40	1.83
5740669--5740696	13	2.2	13	100	0	56	17	0	0	82	0.68
5740689--5740741	11	4.6	11	74	6	52	35	1	0	62	1.06
5743380--5743426	14	3.3	14	85	11	60	70	0	2	27	0.99
5743862--5743893	13	2.5	13	94	0	55	40	3	0	56	1.15
5744411--5744501	25	3.6	25	88	2	130	20	21	18	38	1.93
5745360--5745412	23	2.3	22	78	9	61	50	3	1	43	1.30
5745621--5745734	56	2.0	56	81	6	133	42	10	14	32	1.80
5747152--5747882	85	8.6	85	100	0	1462	51	8	7	33	1.59
5748965--5749012	9	5.2	9	82	5	51	68	0	4	27	1.07
5748965--5749012	18	2.6	18	83	3	60	68	0	4	27	1.07
5751335--5751471	58	2.4	58	92	0	220	41	14	16	27	1.87
5751808--5751863	18	2.9	19	75	14	53	58	3	28	8	1.45
5769994--5770027	17	2.0	17	100	0	68	41	5	17	35	1.74
5774491--5774539	18	2.6	19	83	6	73	34	2	0	63	1.06
5779538--5779631	49	1.9	48	91	0	143	36	25	9	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5788544--5788599	25	2.2	26	80	6	69	39	10	5	44	1.62
5788645--5788683	19	2.2	17	86	13	53	10	12	0	76	1.01
5794079--5794113	17	2.0	18	94	5	63	31	0	0	68	0.90
5794082--5794142	19	3.3	19	73	15	56	29	1	0	68	0.99
5794086--5794146	30	2.1	30	84	9	81	34	1	0	63	1.04
5794080--5794122	18	2.4	17	88	7	59	32	0	0	67	0.91
5794104--5794136	12	2.8	12	86	4	50	33	3	0	63	1.10
5794780--5794817	18	2.1	18	85	9	51	2	21	0	76	0.91
5795683--5795742	30	1.9	32	86	6	88	41	0	38	20	1.52
5796026--5796056	9	3.4	9	90	0	53	38	22	12	25	1.90
5797371--5797486	42	2.8	42	81	0	115	30	25	15	28	1.96
5797866--5797899	13	2.4	14	90	9	52	29	8	0	61	1.26
5798008--5798082	31	2.4	29	70	14	69	38	4	6	50	1.47
5802403--5802447	23	2.0	23	81	0	54	13	22	20	44	1.85
5803431--5803669	90	2.8	85	78	11	258	41	18	7	31	1.79
5807286--5807346	32	1.9	32	96	0	113	50	18	3	27	1.62
5807286--5807359	32	2.5	30	87	10	100	51	18	2	27	1.60
5811790--5812326	109	5.0	109	96	0	927	32	16	18	32	1.93
5814199--5814320	43	2.9	42	82	2	136	31	27	18	22	1.97
5814199--5814320	42	2.9	42	81	7	156	31	27	18	22	1.97
5818254--5818308	27	2.0	27	100	0	110	18	14	21	45	1.85
5818597--5818659	9	7.2	9	89	7	94	36	30	11	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5818597--5818659	17	3.6	18	85	6	94	36	30	11	22	1.89
5818597--5818659	26	2.4	26	84	7	92	36	30	11	22	1.89
5835363--5835529	45	3.8	44	76	4	129	41	15	20	22	1.89
5840354--5840383	13	2.3	13	94	0	51	50	20	0	30	1.49
5841668--5841710	19	2.3	19	84	8	52	2	30	0	67	1.03
5841670--5841716	12	3.8	12	86	11	60	2	29	0	68	1.02
5848979--5849041	26	2.4	26	86	5	92	34	19	7	38	1.81
5849461--5849501	10	4.0	10	87	3	55	34	0	19	46	1.50
5854721--5854757	19	1.9	19	100	0	74	21	10	18	48	1.78
5854979--5855073	48	2.0	48	95	0	172	17	15	23	43	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203