genome.fa.s17.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  121  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38366496--38366534	19	2.0	19	85	5	51	12	35	12	38	1.82
38366538--38366577	20	2.0	20	90	9	64	25	30	15	30	1.95
38371053--38371257	31	6.7	31	69	12	118	32	7	16	44	1.75
38371031--38371257	92	2.5	92	86	3	305	33	7	15	44	1.74
38372542--38372686	50	2.9	49	80	4	157	26	15	22	34	1.95
38394273--38394354	29	2.8	29	80	5	94	23	28	12	36	1.90
38396115--38396159	22	2.0	23	83	12	58	44	11	0	44	1.39
38397516--38397588	37	1.9	38	88	2	112	31	24	2	41	1.69
38397793--38397983	51	3.8	51	76	8	210	31	28	15	24	1.96
38401722--38401890	44	3.8	44	87	4	243	28	24	18	27	1.98
38401722--38401926	88	2.3	89	81	8	215	27	25	20	26	1.99
38401850--38402340	264	1.9	265	94	0	876	28	23	18	29	1.98
38401833--38402346	132	3.9	132	89	1	780	28	22	19	29	1.98
38402408--38402551	44	3.3	44	68	7	121	18	23	31	25	1.97
38402337--38402563	88	2.6	88	92	1	364	18	23	27	30	1.98
38402393--38402533	43	3.2	43	67	11	106	17	27	28	26	1.98
38403780--38403844	18	3.6	17	85	8	58	4	15	0	80	0.88
38403780--38403826	6	8.2	6	90	9	80	0	17	0	82	0.66
38408834--38409148	20	13.8	20	70	20	108	53	2	11	33	1.51
38408827--38409121	24	12.7	23	68	16	155	52	3	10	33	1.51
38408832--38409148	93	3.4	93	100	0	634	52	2	11	33	1.51
38412213--38412238	11	2.4	11	100	0	52	7	0	15	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38412190--38412261	34	2.1	34	82	10	85	5	2	25	66	1.27
38412445--38412487	20	2.2	19	87	4	59	13	4	6	74	1.19
38414940--38415067	39	3.3	40	77	3	127	28	5	21	45	1.74
38414948--38415094	78	1.9	78	80	2	170	31	5	19	43	1.74
38419527--38419623	48	2.0	48	95	0	176	34	6	30	28	1.82
38427279--38427316	19	2.0	19	100	0	76	21	5	10	63	1.46
38427891--38428037	73	2.0	73	93	1	251	35	14	12	38	1.83
38435187--38435255	36	1.9	36	85	11	97	39	4	4	52	1.41
38436468--38436557	32	2.8	32	94	0	162	53	14	4	27	1.60
38436532--38436584	27	2.0	27	85	7	72	52	16	3	26	1.61
38438857--38438976	3	40.0	3	100	0	240	33	0	0	66	0.92
38439091--38439132	20	2.1	20	86	8	59	47	11	2	38	1.53
38443065--38443356	145	2.0	145	91	0	476	33	14	14	37	1.87
38445072--38445120	21	2.3	21	89	0	80	26	18	20	34	1.95
38446097--38446145	24	2.0	24	96	0	89	28	14	4	53	1.59
38446278--38446318	17	2.3	18	80	16	50	43	21	4	29	1.73
38446289--38446330	17	2.5	17	96	0	75	33	23	0	42	1.55
38455041--38455070	15	1.9	16	93	6	53	70	0	3	26	1.03
38463966--38464009	20	2.2	20	100	0	88	34	13	9	43	1.76
38469987--38470208	110	2.0	110	97	1	419	41	10	22	25	1.85
38470172--38470291	46	2.7	46	92	2	199	33	15	22	29	1.94
38471055--38471152	49	2.0	50	82	6	119	46	7	16	29	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38475626--38475657	13	2.5	13	94	0	55	37	12	0	50	1.41
38476597--38476622	12	2.2	12	100	0	52	30	30	0	38	1.58
38476609--38476695	40	2.2	40	97	0	165	32	26	0	41	1.56
38477821--38477845	7	3.6	7	100	0	50	28	0	12	60	1.32
38479044--38479096	23	2.7	18	75	25	61	50	20	0	28	1.48
38479051--38479098	23	2.1	23	100	0	96	45	25	0	29	1.53
38479066--38479122	29	2.0	29	96	0	105	43	28	0	28	1.55
38481394--38481742	124	2.8	124	92	0	601	33	21	15	29	1.94
38481769--38481825	23	2.5	23	97	0	105	47	31	7	14	1.70
38483198--38483229	2	16.0	2	100	0	64	50	0	50	0	1.00
38483589--38483616	6	4.7	6	100	0	56	0	14	0	85	0.59
38483665--38483704	6	6.7	6	100	0	80	15	0	17	67	1.23
38486985--38487033	24	2.0	26	88	8	75	28	0	10	61	1.29
38493397--38493433	17	2.3	17	86	9	51	56	8	0	35	1.29
38493411--38493840	101	4.2	100	81	6	515	57	14	1	27	1.45
38493407--38493840	205	2.1	203	84	4	570	57	14	1	27	1.45
38493815--38493854	18	2.3	18	86	4	55	67	10	0	22	1.20
38494408--38494438	9	3.4	9	95	0	53	48	12	9	29	1.73
38494444--38494502	29	2.0	29	93	0	100	38	11	0	49	1.40
38497509--38497552	19	2.3	19	92	0	70	13	0	29	56	1.38
38497699--38497751	5	10.4	5	82	11	63	20	22	15	41	1.89
38498102--38498143	17	2.5	17	84	3	59	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38511271--38511404	58	2.3	60	82	7	150	27	17	14	40	1.89
38512507--38512539	6	5.7	6	96	3	59	87	0	0	12	0.53
38513286--38513321	17	2.1	17	89	0	54	38	2	22	36	1.69
38515984--38516008	4	6.2	4	100	0	50	52	24	0	24	1.48
38526419--38526464	24	1.9	24	82	8	58	50	2	4	43	1.34
38534831--38534869	18	2.2	18	90	9	62	35	0	2	61	1.10
38534927--38534968	20	2.1	21	86	8	61	59	4	0	35	1.19
38541411--38541456	24	1.9	24	82	8	58	34	2	2	60	1.21
38543637--38543757	43	2.8	43	75	17	117	23	17	26	33	1.96
38549613--38549799	50	3.8	50	79	2	180	28	21	27	21	1.99
38550009--38550054	20	2.3	20	88	7	67	56	4	23	15	1.57
38565477--38565738	39	6.7	40	88	7	337	24	27	22	25	2.00
38571299--38571336	20	1.9	20	89	10	60	34	0	5	60	1.19
38582329--38582477	42	3.5	43	79	6	133	24	17	25	32	1.97
38582327--38582484	43	3.7	42	80	4	174	24	17	26	31	1.97
38599002--38599716	2	357.5	2	100	0	1430	0	49	0	50	1.00
38599802--38599939	73	1.9	73	92	0	231	25	20	15	39	1.91
38603978--38604040	31	2.0	31	90	0	99	49	7	4	38	1.53
38605011--38605086	40	1.9	40	100	0	152	32	9	11	46	1.72
38610153--38610496	123	2.8	123	94	1	602	30	18	20	30	1.96
38611736--38611769	6	5.7	6	89	0	50	14	0	47	38	1.45
38611760--38612142	18	22.8	18	64	22	174	27	0	24	47	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38611749--38612117	47	8.1	47	70	21	270	27	0	25	46	1.57
38611866--38612052	29	6.7	29	76	15	178	27	0	27	44	1.54
38611866--38612099	52	4.4	56	77	20	241	27	0	26	45	1.57
38611876--38612117	47	4.7	52	86	10	290	28	0	25	45	1.57
38611937--38612005	35	2.0	34	86	8	95	28	0	27	43	1.55
38612138--38612201	25	2.5	26	84	2	94	39	10	1	48	1.48
38612302--38612351	21	2.4	21	79	0	55	8	24	28	40	1.83
38614469--38614552	29	3.1	29	62	22	74	41	0	28	29	1.56
38614446--38614560	51	2.3	51	95	0	203	42	0	29	27	1.56
38615742--38615831	9	9.6	9	74	9	72	42	25	7	24	1.81
38615764--38615815	20	2.6	20	90	0	77	42	26	7	23	1.81
38615838--38615935	17	5.4	17	66	13	52	50	14	3	32	1.58
38615829--38615881	20	2.8	19	75	8	56	50	15	1	32	1.54
38615832--38615944	37	3.1	36	87	6	156	47	15	4	32	1.65
38623039--38623122	42	2.0	42	86	9	118	27	15	19	38	1.91
38629560--38629619	31	1.9	31	83	6	77	38	1	11	48	1.50
38629585--38629645	27	2.2	27	82	11	70	42	0	6	50	1.28
38629865--38629904	21	2.0	21	90	5	64	15	5	22	57	1.57
38643365--38643469	52	2.0	52	92	0	174	31	40	6	21	1.79
38644496--38644699	30	7.2	30	76	13	191	56	11	4	27	1.53
38644496--38644718	55	4.0	56	80	11	239	56	11	4	27	1.53
38644534--38644718	25	6.9	25	72	17	140	56	11	4	27	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38644496--38644699	85	2.4	84	82	6	227	56	11	4	27	1.53
38644634--38644735	53	1.9	53	82	4	125	60	10	3	24	1.46
38645432--38645500	33	2.1	33	91	0	111	36	23	13	27	1.92
38650496--38650632	68	2.0	68	98	0	265	19	18	21	40	1.91
38650673--38650722	20	2.5	19	81	9	64	24	0	2	74	0.93
38662954--38663023	26	2.7	26	80	8	72	47	1	2	48	1.25
38664470--38664499	13	2.3	13	94	0	51	30	6	3	60	1.39
38666551--38666841	43	6.8	43	87	1	390	27	24	18	30	1.98
38666541--38666858	85	3.7	86	86	4	419	29	23	17	29	1.97
38666541--38666858	171	1.9	171	84	2	433	29	23	17	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203