genome.fa.s17.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  147  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46708642--46708685	22	2.0	21	86	4	61	77	2	4	15	1.04
46711786--46711914	43	3.0	43	82	10	172	22	17	27	31	1.97
46714643--46714685	9	4.8	9	82	0	50	44	2	32	20	1.65
46714652--46714708	18	3.2	18	78	9	62	38	1	36	22	1.65
46715005--46715050	22	2.0	23	84	12	60	67	2	6	23	1.25
46723550--46723629	26	3.1	26	80	8	85	22	20	23	33	1.97
46723764--46723829	32	2.0	34	85	5	91	25	18	24	31	1.97
46726215--46726281	20	3.4	19	73	8	53	11	26	20	40	1.88
46733146--46733312	91	1.8	90	89	3	264	43	20	7	28	1.79
46734572--46734662	44	2.0	45	89	8	139	48	10	14	26	1.77
46736696--46736737	18	2.3	19	79	4	50	38	19	4	38	1.73
46745947--46746849	69	13.1	68	74	6	453	30	24	16	28	1.97
46746027--46746849	138	6.0	139	75	5	517	29	24	17	28	1.97
46746819--46747018	105	1.9	105	86	4	287	32	19	16	32	1.94
46756392--46756479	42	2.1	43	89	6	135	46	2	23	27	1.64
46757664--46757696	15	2.2	15	94	0	57	27	9	9	54	1.62
46770639--46770765	37	3.5	37	83	3	141	42	30	7	19	1.78
46771852--46772027	57	3.1	56	91	3	271	46	6	19	26	1.75
46775464--46775495	14	2.3	14	100	0	64	9	0	37	53	1.34
46776197--46776252	29	1.9	29	96	0	103	26	10	28	33	1.90
46777164--46777213	25	2.0	25	92	0	82	20	8	28	44	1.79
46780841--46780925	33	2.6	33	83	1	100	20	18	42	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46783002--46783177	27	6.5	27	82	3	176	44	21	15	18	1.87
46783002--46783177	54	3.2	54	79	4	210	44	21	15	18	1.87
46783560--46783617	29	1.9	31	89	6	93	29	15	15	39	1.88
46783564--46783625	29	2.3	27	74	17	65	30	16	14	38	1.88
46783637--46783703	34	2.0	35	82	5	84	23	20	20	34	1.97
46789752--46789790	17	2.4	16	84	12	53	69	2	12	15	1.30
46794656--46794691	18	2.1	17	90	10	56	77	0	8	13	0.98
46807141--46807174	16	2.1	16	100	0	68	38	14	11	35	1.83
46809822--46809861	21	1.9	21	89	0	62	60	2	5	32	1.32
46811076--46811120	6	7.3	6	97	2	81	31	0	20	48	1.49
46811900--46811931	7	4.6	7	92	0	55	9	0	28	62	1.26
46814214--46814251	19	1.9	19	89	5	58	81	5	0	13	0.85
46823945--46823987	21	2.2	19	83	8	50	44	11	0	44	1.40
46825013--46825143	69	1.9	69	87	3	192	30	17	35	16	1.93
46826949--46827065	58	2.0	58	94	0	207	35	11	15	37	1.83
46838810--46838968	45	3.5	44	83	5	176	29	17	12	40	1.87
46852306--46852386	40	2.0	40	97	0	153	25	28	22	23	1.99
46855979--46856044	24	2.8	22	84	11	78	57	6	3	33	1.38
46865141--46865445	70	4.3	70	72	4	211	33	19	20	26	1.96
46865149--46865445	140	2.1	141	80	7	327	32	19	21	26	1.97
46865320--46865538	121	1.8	121	83	0	294	33	20	20	25	1.97
46865441--46865905	70	6.7	70	77	8	414	30	21	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46865466--46865735	133	2.0	134	86	2	373	30	21	22	25	1.99
46868749--46869329	301	1.9	300	82	2	718	29	24	24	21	1.99
46869481--46869530	20	2.5	20	86	0	64	38	10	26	26	1.87
46871483--46871519	14	2.7	14	95	4	67	18	0	18	62	1.34
46873094--46873281	21	9.0	21	70	4	128	43	15	22	18	1.88
46873096--46873292	84	2.3	84	89	0	295	44	15	22	17	1.87
46873110--46873292	42	4.4	42	83	0	231	44	15	22	17	1.87
46876470--46876503	3	11.3	3	100	0	68	32	0	0	67	0.91
46876738--46876812	31	2.4	32	77	6	91	25	22	20	32	1.98
46876631--46876809	90	2.0	90	83	2	225	25	19	18	36	1.94
46878223--46878291	25	2.8	24	72	12	68	33	18	15	31	1.93
46878198--46878446	76	3.3	76	82	1	284	31	23	15	29	1.95
46878397--46878445	25	2.0	25	84	8	64	32	30	14	22	1.93
46880949--46880992	22	2.0	23	83	12	58	34	13	18	34	1.90
46882821--46882866	24	1.9	24	95	0	83	41	15	10	32	1.82
46891572--46891749	27	6.6	27	84	3	205	29	28	15	26	1.96
46891593--46891748	82	1.9	81	88	3	233	29	28	15	26	1.96
46907709--46907754	9	5.1	9	89	0	74	45	10	10	32	1.74
46909492--46909643	80	1.9	80	87	2	225	45	4	34	15	1.66
46912784--46913133	126	2.8	124	86	5	474	29	16	22	31	1.96
46916162--46916379	116	1.9	116	97	0	409	42	9	9	38	1.70
46916381--46916426	22	2.2	20	88	11	67	26	0	28	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46916405--46917123	29	26.2	29	78	16	647	27	0	26	44	1.58
46916376--46916558	51	3.6	50	83	7	251	27	1	25	44	1.63
46916508--46917123	58	11.1	58	85	9	787	27	0	27	44	1.57
46916570--46916616	23	2.3	19	82	17	51	27	0	25	46	1.53
46917123--46917260	25	5.7	25	75	11	144	42	13	0	44	1.48
46917133--46917313	45	4.0	45	73	11	152	45	12	0	41	1.46
46917735--46917769	18	1.9	18	94	0	61	34	8	31	25	1.86
46918418--46918442	7	3.6	7	100	0	50	60	12	0	28	1.32
46919524--46919579	22	2.5	22	97	2	103	39	0	32	28	1.57
46919540--46919596	10	5.2	11	74	21	57	43	0	35	21	1.52
46923561--46923619	22	2.7	22	91	0	91	18	27	18	35	1.94
46939709--46939743	17	2.1	17	89	5	54	57	5	2	34	1.37
46957569--46957838	39	6.9	39	77	1	245	32	17	31	18	1.94
46957567--46957841	78	3.5	77	81	3	273	32	17	32	17	1.94
46957570--46957840	117	2.3	117	79	6	291	32	17	31	18	1.94
46963547--46963759	67	3.1	67	66	12	162	46	5	5	43	1.49
46963379--46963801	138	3.1	138	90	2	643	45	4	7	42	1.51
46976143--46976190	21	2.3	20	80	13	53	29	20	2	47	1.61
46978043--46978122	34	2.3	34	80	6	90	27	20	22	30	1.98
46978562--46978655	27	3.5	26	73	8	73	19	18	21	41	1.90
46980650--46980791	49	2.9	49	82	2	169	25	15	23	35	1.94
46996545--46996579	16	2.2	16	84	0	52	14	17	5	62	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46996845--46997112	50	5.3	50	83	7	254	23	27	21	27	1.99
47003266--47003388	38	3.2	37	83	2	138	33	29	17	19	1.95
47003356--47003398	22	2.0	22	90	0	68	37	32	13	16	1.88
47003358--47003406	22	2.2	22	85	0	62	40	28	14	16	1.87
47007796--47007952	29	5.4	29	75	11	119	36	22	13	28	1.92
47007820--47007971	58	2.6	58	87	0	205	38	24	13	24	1.91
47007820--47007971	29	5.2	29	80	0	178	38	24	13	24	1.91
47008022--47008144	29	4.3	29	73	3	81	38	22	15	23	1.92
47012351--47012405	28	2.0	27	82	10	67	36	0	25	38	1.56
47037689--47037730	20	2.2	20	87	12	61	54	4	21	19	1.62
47041831--47042053	79	2.8	78	83	7	272	24	27	22	25	2.00
47041831--47042053	39	5.7	40	87	6	280	24	27	22	25	2.00
47048979--47049010	16	1.9	17	93	6	57	46	6	0	46	1.27
47049561--47049630	27	2.5	28	95	2	124	30	28	14	27	1.95
47054215--47054278	18	3.6	18	76	16	60	31	15	29	23	1.95
47054384--47054435	27	1.9	27	96	0	95	17	28	15	38	1.90
47065238--47065324	20	4.3	20	85	5	131	13	24	22	39	1.91
47065250--47065362	40	2.8	40	87	1	156	13	25	21	39	1.89
47072168--47072203	17	2.1	17	90	10	56	16	0	44	38	1.48
47082326--47082379	8	6.6	8	80	4	54	27	1	0	70	0.98
47083662--47083744	37	2.3	37	97	2	159	28	14	18	38	1.90
47085411--47085470	31	1.9	32	83	16	81	51	11	10	26	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47093805--47094047	50	4.7	50	86	3	279	25	20	30	23	1.99
47094296--47094346	12	4.2	12	78	7	59	52	5	23	17	1.66
47094306--47094344	20	2.0	20	89	0	60	51	5	25	17	1.66
47096136--47096345	40	5.3	39	89	4	242	25	21	27	25	1.99
47096083--47096345	120	2.2	120	82	4	309	25	21	27	25	1.99
47096084--47096380	80	3.7	80	81	6	230	26	21	27	24	1.99
47100137--47100729	199	3.0	199	94	1	1008	37	19	13	28	1.90
47104197--47104590	200	2.0	200	90	1	628	38	19	12	29	1.89
47105485--47105877	200	2.0	200	93	1	680	35	19	14	30	1.92
47106773--47107167	200	2.0	201	92	0	666	37	19	13	30	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203